Cow genome map

Conread name: Ss1.1-rmed25c_n3.5

Conread position: 6-367
Cow position: chr23:25660383-25660745 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 227
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 14, 226

Conread position: 8-567
Cow position: chr23:25626265-25626821 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 340
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 34

Conread position: 15-320
Cow position: chr23:24522494-24522189 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 190
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 64, 75

Conread position: 16-567
Cow position: chr23:24560899-24560348 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 38-447
Cow position: chr23:24654046-24654455 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 263
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 65, 54

Conread position: 38-450
Cow position: chr23:25626628-25627040 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 263
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 113, 118

Conread position: 38-567
Cow position: chr23:24639229-24639758 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 372

Conread position: 53-316
Cow position: chr23:24546966-24546703 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 97, 107

Conread position: 53-369
Cow position: chr23:24560441-24560126 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 208
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 98, 6

Conread position: 53-418
Cow position: chr23:24522539-24522175 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 237
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 98, 6

Conread position: 53-445
Cow position: chr23:24639749-24640139 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 237
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 297, 6

Conread position: 53-465
Cow position: chr23:24626336-24626746 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 6

Conread position: 53-476
Cow position: chr23:25724099-25723676 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 267
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 76, 82

Conread position: 53-573
Cow position: chr23:25660180-25660698 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 332
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 76, 6

Conread position: 53-586
Cow position: chr23:24639328-24639861 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 333
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 28, 37

Conread position: 53-586
Cow position: chr23:25698627-25698095 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 318
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 279, 18

Conread position: 61-438
Cow position: chr23:24535841-24535464 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 242
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 90, 95

Conread position: 61-569
Cow position: chr23:24522781-24522276 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 315
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 60, 52

Conread position: 62-450
Cow position: chr23:24560517-24560129 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 62-522
Cow position: chr23:24560601-24560141 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 75-587
Cow position: chr23:24639434-24639946 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 85

Conread position: 76-569
Cow position: chr23:25626162-25626655 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 309
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 19, 416

Conread position: 80-482
Cow position: chr23:25626587-25626988 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 260
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 0

Conread position: 84-522
Cow position: chr23:24547103-24546665 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 86-450
Cow position: chr23:24547017-24546653 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 238
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 86-567
Cow position: chr23:24522672-24522194 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 305
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 49, 44

Conread position: 89-547
Cow position: chr23:24639616-24640074 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 279
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 133, 142

Conread position: 89-568
Cow position: chr23:24639532-24640010 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 76

Conread position: 89-586
Cow position: chr23:24547266-24546769 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 65

Conread position: 89-586
Cow position: chr23:24560658-24560161 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 247

Conread position: 91-522
Cow position: chr23:25724151-25723714 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 277
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 21, 0

Conread position: 93-561
Cow position: chr23:24547178-24546710 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 318

Conread position: 98-567
Cow position: chr23:24536056-24535587 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 404

Conread position: 100-463
Cow position: chr23:24654022-24654387 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 242
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 13, 0

Conread position: 100-586
Cow position: chr23:25626526-25627008 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 102-443
Cow position: chr23:25660396-25660737 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 205
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 102-559
Cow position: chr23:24535968-24535511 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 103-558
Cow position: chr23:24522823-24522371 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 270
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 245, 215

Conread position: 103-569
Cow position: chr23:25660145-25660611 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 225

Conread position: 104-455
Cow position: chr23:24639715-24640066 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 231
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 214, 220

Conread position: 104-487
Cow position: chr23:24522572-24522190 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 249
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 244, 5

Conread position: 105-567
Cow position: chr23:24547334-24546872 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 55

Conread position: 109-586
Cow position: chr23:24560890-24560413 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 161

Conread position: 113-402
Cow position: chr23:25698653-25698363 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 185
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 113-568
Cow position: chr23:24560718-24560264 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 47

Conread position: 120-553
Cow position: chr23:24626319-24626750 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 343

Conread position: 163-586
Cow position: chr23:25626000-25626423 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 265
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 325, 354

Conread position: 176-568
Cow position: chr23:24639201-24639590 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 244
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 62, 29

Conread position: 190-600
Cow position: chr23:24626305-24626715 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 264
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 385, 370

Conread position: 195-561
Cow position: chr23:24654034-24654401 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 247
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 5, 148

Conread position: 205-586
Cow position: chr23:24547318-24546937 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 371, 362

Conread position: 207-438
Cow position: chr23:24521964-24521732 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 112, 121

Conread position: 215-587
Cow position: chr23:25724105-25723733 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 229
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 236-587
Cow position: chr23:25698697-25698347 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 229
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 118, 101

Conread position: 244-569
Cow position: chr23:25625997-25626322 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 210
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 79, 84

Conread position: 277-569
Cow position: chr23:24547330-24547038 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 278-586
Cow position: chr23:24522814-24522511 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 195
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 244, 24

Conread position: 286-586
Cow position: chr23:24654042-24654342 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 199
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 290, 274

Conread position: 377-569
Cow position: chr23:24536029-24535837 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 129
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.