Cow genome map


           Conread name:
           Ss1.1-rmed25c_n3.5
        

               Conread position:
               6-367
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               14, 226
               

               Conread position:
               8-567
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               340
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               19, 34
               

               Conread position:
               15-320
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               64, 75
               

               Conread position:
               16-567
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               38-447
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               65, 54
               

               Conread position:
               38-450
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               263
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               113, 118
               

               Conread position:
               38-567
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               360, 372
               

               Conread position:
               53-316
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               97, 107
               

               Conread position:
               53-369
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               98, 6
               

               Conread position:
               53-418
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               98, 6
               

               Conread position:
               53-445
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               297, 6
               

               Conread position:
               53-465
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 6
               

               Conread position:
               53-476
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               267
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               76, 82
               

               Conread position:
               53-573
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               332
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               76, 6
               

               Conread position:
               53-586
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               333
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               28, 37
               

               Conread position:
               53-586
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               318
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               279, 18
               

               Conread position:
               61-438
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               242
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               90, 95
               

               Conread position:
               61-569
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               315
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               60, 52
               

               Conread position:
               62-450
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               62-522
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               75-587
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 85
               

               Conread position:
               76-569
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               309
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               19, 416
               

               Conread position:
               80-482
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               84-522
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               86-450
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               238
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               86-567
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               305
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               49, 44
               

               Conread position:
               89-547
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               279
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               133, 142
               

               Conread position:
               89-568
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 76
               

               Conread position:
               89-586
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 65
               

               Conread position:
               89-586
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 247
               

               Conread position:
               91-522
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               277
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               93-561
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               309, 318
               

               Conread position:
               98-567
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               411, 404
               

               Conread position:
               100-463
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               242
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               100-586
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               102-443
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               102-559
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               103-558
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               270
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               245, 215
               

               Conread position:
               103-569
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 225
               

               Conread position:
               104-455
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               231
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               214, 220
               

               Conread position:
               104-487
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               249
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               244, 5
               

               Conread position:
               105-567
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               109-586
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 161
               

               Conread position:
               113-402
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               113-568
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 47
               

               Conread position:
               120-553
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               360, 343
               

               Conread position:
               163-586
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               325, 354
               

               Conread position:
               176-568
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               62, 29
               

               Conread position:
               190-600
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               264
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               385, 370
               

               Conread position:
               195-561
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               247
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               5, 148
               

               Conread position:
               205-586
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               371, 362
               

               Conread position:
               207-438
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               112, 121
               

               Conread position:
               215-587
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               236-587
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               118, 101
               

               Conread position:
               244-569
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               79, 84
               

               Conread position:
               277-569
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               278-586
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               244, 24
               

               Conread position:
               286-586
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               290, 274
               

               Conread position:
               377-569
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.