Cow genome map
| Conread name: | Ss1.1-rmed25c_n3.5 |
| Conread position: | 5-496 |
| Cow position: | chr25:34714012-34714504 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 5-522 |
| Cow position: | chr25:23420362-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 85 |
| Conread position: | 6-567 |
| Cow position: | chr25:34762811-34763367 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 216, 14 |
| Conread position: | 8-585 |
| Cow position: | chr25:34770058-34769481 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-532 |
| Cow position: | chr25:33127705-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 24-430 |
| Cow position: | chr25:34714116-34714522 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 38-342 |
| Cow position: | chr25:34769524-34769220 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-569 |
| Cow position: | chr25:34447034-34447565 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 136, 124 |
| Conread position: | 39-483 |
| Cow position: | chr25:33299416-33299856 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 41-572 |
| Cow position: | chr25:34713965-34714495 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 320 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 53-438 |
| Cow position: | chr25:346476-346860 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 53-557 |
| Cow position: | chr25:33305936-33305438 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 103, 6 |
| Conread position: | 53-561 |
| Cow position: | chr25:33298926-33299434 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 289, 281 |
| Conread position: | 53-561 |
| Cow position: | chr25:36800658-36801166 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 180, 196 |
| Conread position: | 53-567 |
| Cow position: | chr25:33299179-33299692 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 53-584 |
| Cow position: | chr25:34447217-34447746 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 522, 483 |
| Conread position: | 53-586 |
| Cow position: | chr25:34447301-34447826 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 336 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 98, 107 |
| Conread position: | 61-447 |
| Cow position: | chr25:33145049-33145435 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 90, 104 |
| Conread position: | 61-566 |
| Cow position: | chr25:36800582-36801087 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 61-585 |
| Cow position: | chr25:33157354-33156830 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 413 |
| Conread position: | 61-586 |
| Cow position: | chr25:23420334-23420859 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 62-586 |
| Cow position: | chr25:34446974-34447497 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 322 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 512, 501 |
| Conread position: | 71-567 |
| Cow position: | chr25:33306336-33305843 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 247, 49 |
| Conread position: | 73-415 |
| Cow position: | chr25:18642208-18641863 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 73-450 |
| Cow position: | chr25:34769573-34769196 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 100, 94 |
| Conread position: | 73-569 |
| Cow position: | chr25:34770161-34769665 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 87 |
| Conread position: | 75-561 |
| Cow position: | chr25:33298613-33299098 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 302 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 164, 9 |
| Conread position: | 76-522 |
| Cow position: | chr25:346412-346860 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 80-487 |
| Cow position: | chr25:34769649-34769243 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 83-585 |
| Cow position: | chr25:34769902-34769397 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 84-580 |
| Cow position: | chr25:34769730-34769234 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 252 |
| Conread position: | 89-438 |
| Cow position: | chr25:36801606-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-465 |
| Cow position: | chr25:33157158-33156783 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 219, 235 |
| Conread position: | 89-561 |
| Cow position: | chr25:33299298-33299770 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-586 |
| Cow position: | chr25:34769809-34769312 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-396 |
| Cow position: | chr25:33305737-33305431 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 143, 11 |
| Conread position: | 91-567 |
| Cow position: | chr25:33298879-33299356 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 306 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 12, 153 |
| Conread position: | 98-567 |
| Cow position: | chr25:33144920-33145387 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 5, 111 |
| Conread position: | 98-567 |
| Cow position: | chr25:33298467-33298936 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 99, 92 |
| Conread position: | 98-567 |
| Cow position: | chr25:33298718-33299188 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 73 |
| Conread position: | 102-561 |
| Cow position: | chr25:33157229-33156770 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 457, 435 |
| Conread position: | 102-586 |
| Cow position: | chr25:34447182-34447666 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-586 |
| Cow position: | chr25:34770048-34769564 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-561 |
| Cow position: | chr25:36801452-36801910 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 105-439 |
| Cow position: | chr25:366720-367054 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 105-459 |
| Cow position: | chr25:22235823-22236178 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 127 |
| Conread position: | 105-561 |
| Cow position: | chr25:33299146-33299602 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-561 |
| Cow position: | chr25:36800878-36801334 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 213, 226 |
| Conread position: | 109-522 |
| Cow position: | chr25:36801542-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-570 |
| Cow position: | chr25:33144848-33145306 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 112-314 |
| Cow position: | chr25:34433022-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 112-549 |
| Cow position: | chr25:33305400-33304967 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 355, 82 |
| Conread position: | 112-570 |
| Cow position: | chr25:36800801-36801259 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 293 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 38, 70 |
| Conread position: | 119-571 |
| Cow position: | chr25:34732095-34731645 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 125-573 |
| Cow position: | chr25:34446953-34447400 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 219 |
| Conread position: | 134-450 |
| Cow position: | chr25:326947-327263 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 134-600 |
| Cow position: | chr25:33127742-33128208 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 331 |
| Conread position: | 139-567 |
| Cow position: | chr25:23420328-23420756 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-600 |
| Cow position: | chr25:36800582-36801037 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 154-569 |
| Cow position: | chr25:23420190-23420590 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 106, 89 |
| Conread position: | 164-398 |
| Cow position: | chr25:34432990-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 169-580 |
| Cow position: | chr25:34433499-34433906 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 311, 106 |
| Conread position: | 173-487 |
| Cow position: | chr25:366704-367018 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 187-567 |
| Cow position: | chr25:34446931-34447311 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 191-558 |
| Cow position: | chr25:34732611-34732244 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 40 |
| Conread position: | 205-567 |
| Cow position: | chr25:33157462-33157100 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 208-586 |
| Cow position: | chr25:33127732-33128110 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-558 |
| Cow position: | chr25:18642213-18641888 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 129, 232 |
| Conread position: | 237-570 |
| Cow position: | chr25:34770165-34769832 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 242-567 |
| Cow position: | chr25:34446902-34447227 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 247-456 |
| Cow position: | chr25:22235882-22236091 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 79 |
| Conread position: | 248-461 |
| Cow position: | chr25:34432990-34433203 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 248-567 |
| Cow position: | chr25:33157503-33157184 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-568 |
| Cow position: | chr25:33305425-33305114 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 279, 21 |
| Conread position: | 277-561 |
| Cow position: | chr25:366724-367008 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 342-586 |
| Cow position: | chr25:34770146-34769900 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 223 |
Show alignments to all cow chromosomes.