Cow genome map


           Conread name:
           Ss1.1-rmed25c_n3.5
        

               Conread position:
               5-496
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               296
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               5-522
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 85
               

               Conread position:
               6-567
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               327
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               216, 14
               

               Conread position:
               8-585
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-532
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 29
               

               Conread position:
               24-430
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               246
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               31, 11
               

               Conread position:
               38-342
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               38-569
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               324
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               136, 124
               

               Conread position:
               39-483
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               270
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               51, 44
               

               Conread position:
               41-572
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               320
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               56, 42
               

               Conread position:
               53-438
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               53-557
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               319
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               103, 6
               

               Conread position:
               53-561
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               305
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               289, 281
               

               Conread position:
               53-561
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               308
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               180, 196
               

               Conread position:
               53-567
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               305
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               53-584
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               318
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               522, 483
               

               Conread position:
               53-586
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               336
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               98, 107
               

               Conread position:
               61-447
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               90, 104
               

               Conread position:
               61-566
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               306
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               42, 27
               

               Conread position:
               61-585
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               422, 413
               

               Conread position:
               61-586
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 32
               

               Conread position:
               62-586
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               322
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               512, 501
               

               Conread position:
               71-567
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               309
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               247, 49
               

               Conread position:
               73-415
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               8, 17
               

               Conread position:
               73-450
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               100, 94
               

               Conread position:
               73-569
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 87
               

               Conread position:
               75-561
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               302
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               164, 9
               

               Conread position:
               76-522
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               273
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               22, 8
               

               Conread position:
               80-487
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               83-585
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               84-580
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               258, 252
               

               Conread position:
               89-438
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               89-465
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               219, 235
               

               Conread position:
               89-561
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               89-586
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               90-396
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               143, 11
               

               Conread position:
               91-567
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               306
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               12, 153
               

               Conread position:
               98-567
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               290
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               5, 111
               

               Conread position:
               98-567
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               287
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               99, 92
               

               Conread position:
               98-567
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 73
               

               Conread position:
               102-561
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               457, 435
               

               Conread position:
               102-586
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               300
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               102-586
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               103-561
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               274
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               56, 47
               

               Conread position:
               105-439
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               24, 30
               

               Conread position:
               105-459
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               17, 127
               

               Conread position:
               105-561
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               285
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               105-561
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               281
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               213, 226
               

               Conread position:
               109-522
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               109-570
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               288
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               48, 56
               

               Conread position:
               112-314
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               37, 42
               

               Conread position:
               112-549
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               268
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               355, 82
               

               Conread position:
               112-570
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               293
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               38, 70
               

               Conread position:
               119-571
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               273
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               30, 36
               

               Conread position:
               125-573
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 219
               

               Conread position:
               134-450
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               208
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               18, 59
               

               Conread position:
               134-600
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               343, 331
               

               Conread position:
               139-567
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-600
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               280
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               52, 45
               

               Conread position:
               154-569
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               106, 89
               

               Conread position:
               164-398
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               169-580
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               311, 106
               

               Conread position:
               173-487
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               49, 58
               

               Conread position:
               187-567
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               191-558
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               36, 40
               

               Conread position:
               205-567
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 26
               

               Conread position:
               208-586
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               245
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               236-558
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               129, 232
               

               Conread position:
               237-570
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               217
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               106, 83
               

               Conread position:
               242-567
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               18, 27
               

               Conread position:
               247-456
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               62, 79
               

               Conread position:
               248-461
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               248-567
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               253-568
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               279, 21
               

               Conread position:
               277-561
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-586
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               21, 223
               
Show alignments to all cow chromosomes.