Cow genome map
| Conread name: | Ss1.1-rmed25c_n3.5 |
| Conread position: | 8-600 |
| Cow position: | chr28:7757902-7758478 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 336 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 71, 79 |
| Conread position: | 27-417 |
| Cow position: | chr28:33210229-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 333, 0 |
| Conread position: | 33-556 |
| Cow position: | chr28:7758331-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 123, 106 |
| Conread position: | 40-439 |
| Cow position: | chr28:34679462-34679071 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 53-561 |
| Cow position: | chr28:7810376-7810874 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 76, 6 |
| Conread position: | 53-567 |
| Cow position: | chr28:7757696-7758209 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 6 |
| Conread position: | 53-567 |
| Cow position: | chr28:9252962-9253476 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 53-568 |
| Cow position: | chr28:7757527-7758042 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 121 |
| Conread position: | 62-600 |
| Cow position: | chr28:7758124-7758646 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 533, 209 |
| Conread position: | 68-477 |
| Cow position: | chr28:7757878-7758287 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 68-522 |
| Cow position: | chr28:9253145-9253599 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 69-569 |
| Cow position: | chr28:9253062-9253562 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 180 |
| Conread position: | 70-273 |
| Cow position: | chr28:9253399-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-568 |
| Cow position: | chr28:9299027-9299511 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 336, 158 |
| Conread position: | 71-382 |
| Cow position: | chr28:7810636-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 80-465 |
| Cow position: | chr28:7810562-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 242, 9 |
| Conread position: | 89-523 |
| Cow position: | chr28:34679497-34679071 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 279 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 126, 117 |
| Conread position: | 89-561 |
| Cow position: | chr28:9298713-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 91-585 |
| Cow position: | chr28:7757648-7758143 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 94-561 |
| Cow position: | chr28:7757401-7757867 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 12 |
| Conread position: | 96-404 |
| Cow position: | chr28:9290406-9290712 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 97-557 |
| Cow position: | chr28:11334150-11333690 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 130, 148 |
| Conread position: | 98-357 |
| Cow position: | chr28:9253342-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 99-568 |
| Cow position: | chr28:7810251-7810712 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 302 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 284 |
| Conread position: | 102-567 |
| Cow position: | chr28:7757492-7757957 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 363 |
| Conread position: | 102-586 |
| Cow position: | chr28:9289993-9290474 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 105-554 |
| Cow position: | chr28:7758319-7758768 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-561 |
| Cow position: | chr28:34679559-34679117 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 130-586 |
| Cow position: | chr28:9298589-9299039 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 134-549 |
| Cow position: | chr28:7810531-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 158-533 |
| Cow position: | chr28:9299188-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 173-578 |
| Cow position: | chr28:34679579-34679173 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 247, 30 |
| Conread position: | 177-600 |
| Cow position: | chr28:7757399-7757822 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 399, 386 |
| Conread position: | 190-561 |
| Cow position: | chr28:33210223-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 193-568 |
| Cow position: | chr28:7758323-7758698 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 238-568 |
| Cow position: | chr28:7757377-7757706 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 347-568 |
| Cow position: | chr28:11334152-11333931 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 150, 133 |
Show alignments to all cow chromosomes.