Cow genome map
| Conread name: | Ss1.1-rmed25c_n3.5 |
| Conread position: | 15-586 |
| Cow position: | chr3:77351167-77350607 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 350 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 86, 69 |
| Conread position: | 15-589 |
| Cow position: | chr3:68027081-68027654 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 22-482 |
| Cow position: | chr3:68026920-68027380 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 24-447 |
| Cow position: | chr3:62721991-62721568 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 125, 115 |
| Conread position: | 38-585 |
| Cow position: | chr3:68045529-68046076 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 148 |
| Conread position: | 39-585 |
| Cow position: | chr3:68045782-68046328 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 127 |
| Conread position: | 45-586 |
| Cow position: | chr3:62722388-62721849 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 5 |
| Conread position: | 53-449 |
| Cow position: | chr3:68045965-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 28, 6 |
| Conread position: | 53-455 |
| Cow position: | chr3:62743119-62743520 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 107 |
| Conread position: | 53-586 |
| Cow position: | chr3:68027204-68027736 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 6 |
| Conread position: | 72-587 |
| Cow position: | chr3:62742240-62742753 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 314 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 13, 115 |
| Conread position: | 80-561 |
| Cow position: | chr3:62742917-62743375 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 445, 9 |
| Conread position: | 83-586 |
| Cow position: | chr3:62742500-62743002 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 81 |
| Conread position: | 84-453 |
| Cow position: | chr3:62742669-62743032 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 215, 77 |
| Conread position: | 84-464 |
| Cow position: | chr3:62743071-62743446 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 84-571 |
| Cow position: | chr3:77351182-77350704 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 71, 76 |
| Conread position: | 84-586 |
| Cow position: | chr3:62722183-62721681 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 491, 486 |
| Conread position: | 89-586 |
| Cow position: | chr3:62722094-62721597 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 457, 448 |
| Conread position: | 89-611 |
| Cow position: | chr3:68045748-68046269 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 161 |
| Conread position: | 104-449 |
| Cow position: | chr3:68027422-68027765 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 324, 0 |
| Conread position: | 109-531 |
| Cow position: | chr3:68045936-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 113-522 |
| Cow position: | chr3:62721986-62721577 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 261 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-593 |
| Cow position: | chr3:62743037-62743489 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 134-600 |
| Cow position: | chr3:62722217-62721751 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 426 |
| Conread position: | 163-314 |
| Cow position: | chr3:16020410-16020259 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 169-568 |
| Cow position: | chr3:68026983-68027382 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 78, 70 |
| Conread position: | 241-569 |
| Cow position: | chr3:68026971-68027299 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 300-600 |
| Cow position: | chr3:62722387-62722087 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 74, 49 |
Show alignments to all cow chromosomes.