Cow genome map


           Conread name:
           Ss1.1-rmed25c_n3.5
        

               Conread position:
               7-600
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               486, 0
               

               Conread position:
               8-568
               

               Cow position:
               
               

               Alignm length:
               564
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 241
               

               Conread position:
               8-569
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               350
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               80, 51
               

               Conread position:
               8-586
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               19-443
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               262
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               84, 21
               

               Conread position:
               25-586
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               550, 12
               

               Conread position:
               27-528
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               314
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               49, 33
               

               Conread position:
               31-460
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               38-463
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               278
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               27, 7
               

               Conread position:
               38-561
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               508, 498
               

               Conread position:
               38-572
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               522, 0
               

               Conread position:
               39-315
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               14, 21
               

               Conread position:
               40-567
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               328
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               63, 33
               

               Conread position:
               41-557
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 135
               

               Conread position:
               50-567
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 59
               

               Conread position:
               51-580
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               53-567
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 289
               

               Conread position:
               53-587
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 176
               

               Conread position:
               61-464
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               262
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               21, 29
               

               Conread position:
               61-516
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               20, 29
               

               Conread position:
               61-568
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               264, 281
               

               Conread position:
               61-585
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 98
               

               Conread position:
               61-586
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 29
               

               Conread position:
               68-421
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               223
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               13, 22
               

               Conread position:
               69-568
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               309
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               257, 273
               

               Conread position:
               75-488
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               264
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               75, 8
               

               Conread position:
               79-567
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               298
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               157, 178
               

               Conread position:
               81-584
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               319
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               22, 159
               

               Conread position:
               84-502
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               84-600
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 244
               

               Conread position:
               85-452
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 284
               

               Conread position:
               86-495
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               173, 154
               

               Conread position:
               86-567
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               306
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               235, 239
               

               Conread position:
               86-567
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               301
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               71, 80
               

               Conread position:
               89-567
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               303
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               232, 237
               

               Conread position:
               89-567
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               89-568
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               248, 75
               

               Conread position:
               89-568
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 232
               

               Conread position:
               89-586
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 74
               

               Conread position:
               89-586
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               305
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               40, 46
               

               Conread position:
               89-586
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 71
               

               Conread position:
               89-586
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               480, 441
               

               Conread position:
               89-586
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 46
               

               Conread position:
               91-568
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               297
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               12, 150
               

               Conread position:
               93-357
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               58, 67
               

               Conread position:
               93-465
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               235
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               219, 233
               

               Conread position:
               93-565
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               300
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               66, 46
               

               Conread position:
               93-569
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               295
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               140, 95
               

               Conread position:
               94-342
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               9, 147
               

               Conread position:
               94-567
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               280
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               9, 71
               

               Conread position:
               94-570
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               300
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               9, 164
               

               Conread position:
               95-567
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               286
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               34, 40
               

               Conread position:
               102-402
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               161, 138
               

               Conread position:
               102-567
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               277
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               157, 145
               

               Conread position:
               102-584
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               306
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               57, 47
               

               Conread position:
               102-586
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               73, 59
               

               Conread position:
               102-604
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               317
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               212, 223
               

               Conread position:
               104-356
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               104-439
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               217, 224
               

               Conread position:
               104-561
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 230
               

               Conread position:
               104-586
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               109-549
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               42, 52
               

               Conread position:
               109-584
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               293
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               66, 47
               

               Conread position:
               109-585
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               111-574
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 45
               

               Conread position:
               112-570
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               283
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               118-586
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               298
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               52, 31
               

               Conread position:
               119-561
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               291
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               119-568
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               280
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               300, 237
               

               Conread position:
               119-568
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               277
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               444, 0
               

               Conread position:
               120-528
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               251
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               126-567
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               271
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               22, 13
               

               Conread position:
               133-586
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               134-567
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               268
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               25, 36
               

               Conread position:
               134-568
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               429, 0
               

               Conread position:
               134-570
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               265
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               29, 22
               

               Conread position:
               140-402
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               202, 189
               

               Conread position:
               148-586
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 9
               

               Conread position:
               164-585
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               264
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               172-567
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               53, 48
               

               Conread position:
               172-585
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               267
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               331, 340
               

               Conread position:
               179-586
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               243
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               190-588
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               68, 51
               

               Conread position:
               192-556
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               62, 45
               

               Conread position:
               207-600
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               35, 41
               

               Conread position:
               347-604
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               16, 10
               
Show alignments to all cow chromosomes.