Cow genome map

Conread name: Ss1.1-rmed25c_n3.5

Conread position: 7-600
Cow position: chr7:1014170-1014757 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 486, 0

Conread position: 8-568
Cow position: chr7:42879042-42878483 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 241

Conread position: 8-569
Cow position: chr7:8277914-8278473 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 350
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 80, 51

Conread position: 8-586
Cow position: chr7:1014753-1015331 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-443
Cow position: chr7:18390409-18390831 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 262
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 84, 21

Conread position: 25-586
Cow position: chr7:1014274-1014827 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 550, 12

Conread position: 27-528
Cow position: chr7:42878769-42878270 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 314
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 33

Conread position: 31-460
Cow position: chr7:1015028-1015457 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 38-463
Cow position: chr7:3180549-3180966 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 278
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 27, 7

Conread position: 38-561
Cow position: chr7:3179709-3180232 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 508, 498

Conread position: 38-572
Cow position: chr7:3179961-3180494 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 522, 0

Conread position: 39-315
Cow position: chr7:1439987-1440263 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 179
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 21

Conread position: 40-567
Cow position: chr7:8242813-8243340 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 328
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 63, 33

Conread position: 41-557
Cow position: chr7:42879263-42878745 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 135

Conread position: 50-567
Cow position: chr7:42879336-42878819 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 59

Conread position: 51-580
Cow position: chr7:3179636-3180167 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 53-567
Cow position: chr7:42879081-42878567 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 289

Conread position: 53-587
Cow position: chr7:1014714-1015248 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 176

Conread position: 61-464
Cow position: chr7:1438284-1438687 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 262
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 21, 29

Conread position: 61-516
Cow position: chr7:18390365-18390820 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 282
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 20, 29

Conread position: 61-568
Cow position: chr7:42878905-42878398 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 281

Conread position: 61-585
Cow position: chr7:3180068-3180592 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 98

Conread position: 61-586
Cow position: chr7:11601152-11600627 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 29

Conread position: 68-421
Cow position: chr7:1439933-1440285 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 223
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 13, 22

Conread position: 69-568
Cow position: chr7:42878813-42878315 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 309
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 257, 273

Conread position: 75-488
Cow position: chr7:8243520-8243932 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 264
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 75, 8

Conread position: 79-567
Cow position: chr7:8277733-8278221 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 298
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 157, 178

Conread position: 81-584
Cow position: chr7:8325291-8325798 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 319
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 22, 159

Conread position: 84-502
Cow position: chr7:1014997-1015415 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 84-600
Cow position: chr7:3180259-3180775 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 244

Conread position: 85-452
Cow position: chr7:3180512-3180880 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 284

Conread position: 86-495
Cow position: chr7:8243698-8244104 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 257
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 173, 154

Conread position: 86-567
Cow position: chr7:8242943-8243423 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 306
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 235, 239

Conread position: 86-567
Cow position: chr7:8243446-8243927 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 301
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 71, 80

Conread position: 89-567
Cow position: chr7:8277659-8278137 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 303
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 232, 237

Conread position: 89-567
Cow position: chr7:18390141-18390619 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 89-568
Cow position: chr7:1439787-1440264 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 296
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 248, 75

Conread position: 89-568
Cow position: chr7:3179928-3180406 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 232

Conread position: 89-586
Cow position: chr7:1014918-1015415 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 74

Conread position: 89-586
Cow position: chr7:1439704-1440198 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 305
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 40, 46

Conread position: 89-586
Cow position: chr7:3180180-3180677 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 71

Conread position: 89-586
Cow position: chr7:3180348-3180844 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 480, 441

Conread position: 89-586
Cow position: chr7:18390225-18390722 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 46

Conread position: 91-568
Cow position: chr7:8325217-8325695 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 297
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 12, 150

Conread position: 93-357
Cow position: chr7:11434504-11434240 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 67

Conread position: 93-465
Cow position: chr7:8277411-8277783 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 235
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 219, 233

Conread position: 93-565
Cow position: chr7:8277579-8278051 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 300
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 66, 46

Conread position: 93-569
Cow position: chr7:8243286-8243761 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 295
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 140, 95

Conread position: 94-342
Cow position: chr7:8325892-8326141 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 163
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 147

Conread position: 94-567
Cow position: chr7:11434749-11434282 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 280
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 9, 71

Conread position: 94-570
Cow position: chr7:8325640-8326117 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 300
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 9, 164

Conread position: 95-567
Cow position: chr7:8277329-8277801 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 286
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 34, 40

Conread position: 102-402
Cow position: chr7:8243211-8243510 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 200
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 161, 138

Conread position: 102-567
Cow position: chr7:11434824-11434366 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 277
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 157, 145

Conread position: 102-584
Cow position: chr7:8324893-8325378 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 306
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 57, 47

Conread position: 102-586
Cow position: chr7:11600943-11600459 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 291
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 73, 59

Conread position: 102-604
Cow position: chr7:8325481-8325985 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 317
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 212, 223

Conread position: 104-356
Cow position: chr7:11600689-11600437 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 104-439
Cow position: chr7:11600773-11600438 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 217
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 217, 224

Conread position: 104-561
Cow position: chr7:8325063-8325520 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 230

Conread position: 104-586
Cow position: chr7:3179859-3180341 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 109-549
Cow position: chr7:11434971-11434545 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 276
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 52

Conread position: 109-584
Cow position: chr7:8277259-8277737 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 293
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 66, 47

Conread position: 109-585
Cow position: chr7:11601188-11600712 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 111-574
Cow position: chr7:8324734-8325197 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 45

Conread position: 112-570
Cow position: chr7:11601017-11600559 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 283
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 118-586
Cow position: chr7:11601262-11600795 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 298
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 31

Conread position: 119-561
Cow position: chr7:8277857-8278299 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 291
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 10, 16

Conread position: 119-568
Cow position: chr7:8243144-8243592 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 280
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 300, 237

Conread position: 119-568
Cow position: chr7:8277521-8277969 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 277
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 444, 0

Conread position: 120-528
Cow position: chr7:11600841-11600433 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 251
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 126-567
Cow position: chr7:18390010-18390451 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 271
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 22, 13

Conread position: 133-586
Cow position: chr7:1014710-1015163 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 134-567
Cow position: chr7:42879420-42878987 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 268
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 25, 36

Conread position: 134-568
Cow position: chr7:18390354-18390787 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 429, 0

Conread position: 134-570
Cow position: chr7:8242823-8243259 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 265
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 22

Conread position: 140-402
Cow position: chr7:11434541-11434279 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 173
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 202, 189

Conread position: 148-586
Cow position: chr7:3179652-3180089 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 9

Conread position: 164-585
Cow position: chr7:1014657-1015078 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 264
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 172-567
Cow position: chr7:1439448-1439845 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 254
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 53, 48

Conread position: 172-585
Cow position: chr7:18390140-18390553 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 267
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 331, 340

Conread position: 179-586
Cow position: chr7:1014090-1014497 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 243
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 190-588
Cow position: chr7:8324729-8325127 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 251
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 68, 51

Conread position: 192-556
Cow position: chr7:11601272-11600909 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 240
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 62, 45

Conread position: 207-600
Cow position: chr7:18390007-18390400 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 247
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 35, 41

Conread position: 347-604
Cow position: chr7:11601202-11600943 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 10

Show alignments to all cow chromosomes.