Cow genome map
| Conread name: | Ss1.1-rmed25c_n3.5 |
| Conread position: | 1-567 |
| Cow position: | chr8:46816104-46816670 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-569 |
| Cow position: | chr8:45200996-45201561 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 8-569 |
| Cow position: | chr8:48406892-48406331 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 330 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 67, 51 |
| Conread position: | 14-569 |
| Cow position: | chr8:55581062-55581617 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 15-570 |
| Cow position: | chr8:46816790-46817345 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 145 |
| Conread position: | 16-573 |
| Cow position: | chr8:45201344-45201900 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 318 |
| Conread position: | 20-561 |
| Cow position: | chr8:46815957-46816496 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 27-465 |
| Cow position: | chr8:45201607-45202038 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 54, 63 |
| Conread position: | 38-451 |
| Cow position: | chr8:48406694-48406279 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 185, 193 |
| Conread position: | 38-586 |
| Cow position: | chr8:48407618-48407070 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-465 |
| Cow position: | chr8:48407189-48406771 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 277, 10 |
| Conread position: | 53-568 |
| Cow position: | chr8:45200961-45201476 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 190 |
| Conread position: | 53-569 |
| Cow position: | chr8:48406930-48406415 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 53-571 |
| Cow position: | chr8:45201297-45201814 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 510, 0 |
| Conread position: | 53-578 |
| Cow position: | chr8:48407015-48406491 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 329 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 98, 112 |
| Conread position: | 53-579 |
| Cow position: | chr8:55581185-55581711 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-585 |
| Cow position: | chr8:46816324-46816856 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-586 |
| Cow position: | chr8:48407518-48406986 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 6 |
| Conread position: | 53-600 |
| Cow position: | chr8:48407435-48406888 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 487, 471 |
| Conread position: | 59-586 |
| Cow position: | chr8:48407345-48406818 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 172 |
| Conread position: | 61-569 |
| Cow position: | chr8:46816668-46817176 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 290 |
| Conread position: | 62-315 |
| Cow position: | chr8:6958044-6957791 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 62-567 |
| Cow position: | chr8:46816753-46817258 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-569 |
| Cow position: | chr8:46816081-46816588 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 341 |
| Conread position: | 68-465 |
| Cow position: | chr8:45201564-45201961 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 68-561 |
| Cow position: | chr8:46816591-46817084 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 162 |
| Conread position: | 71-448 |
| Cow position: | chr8:46817014-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-567 |
| Cow position: | chr8:46816429-46816922 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 256 |
| Conread position: | 81-464 |
| Cow position: | chr8:55581381-55581765 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 88, 81 |
| Conread position: | 84-585 |
| Cow position: | chr8:55581048-55581549 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 342 |
| Conread position: | 89-564 |
| Cow position: | chr8:45201501-45201976 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-568 |
| Cow position: | chr8:46816528-46817007 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 302 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 319, 314 |
| Conread position: | 89-586 |
| Cow position: | chr8:45201165-45201662 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 78 |
| Conread position: | 102-567 |
| Cow position: | chr8:55580982-55581447 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-569 |
| Cow position: | chr8:55580898-55581365 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-570 |
| Cow position: | chr8:45200936-45201394 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 290 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 84, 78 |
| Conread position: | 120-569 |
| Cow position: | chr8:46815974-46816420 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 9 |
| Conread position: | 121-567 |
| Cow position: | chr8:55580833-55581279 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-556 |
| Cow position: | chr8:6958056-6957635 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 169-586 |
| Cow position: | chr8:55580797-55581214 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 406, 391 |
| Conread position: | 170-569 |
| Cow position: | chr8:46815847-46816252 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 193-572 |
| Cow position: | chr8:48407631-48407253 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 370, 0 |
| Conread position: | 193-586 |
| Cow position: | chr8:55580736-55581130 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 214-465 |
| Cow position: | chr8:6958060-6957809 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 242-585 |
| Cow position: | chr8:45200898-45201241 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 106, 101 |
| Conread position: | 261-556 |
| Cow position: | chr8:48407647-48407352 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 298-572 |
| Cow position: | chr8:6958060-6957786 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.