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Cow genome map

           
Conread name:
           
Ss1.1-rmgp001_g10.5
        

               
Conread position:
               
1-116
               

               
Cow position:
               
chr12:7108918-7109033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr12:14132014-14131895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr12:25529760-25529879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-130
               

               
Cow position:
               
chr12:29119629-29119756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr12:40307426-40307561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr12:23154737-23154581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr12:3510294-3510447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
54, 10
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr12:3880526-3880371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr12:5134869-5135026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr12:31925380-31925551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
115, 149
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr12:36954645-36954479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr12:4134394-4134586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 184
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr12:12017606-12017804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 78
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr12:10461736-10461929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
115, 21
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr12:30728509-30728306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 142
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr12:31841166-31841373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr12:12199176-12198971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 67
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr12:24755294-24755102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr12:19865973-19866177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
94, 7
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr12:19420202-19419999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr12:47928945-47929153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr12:18417294-18417513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 29
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr12:42167375-42167603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr12:46143551-46143791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
123, 193
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr12:17495462-17495237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr12:8869153-8868902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr12:28559025-28559271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 228
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr12:26782611-26782858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 142
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr12:941362-941615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr12:18937117-18937381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr12:19039882-19039635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
52, 207
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr12:28572432-28572662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 97
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr12:41214589-41214346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr12:48437174-48436936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 121
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr12:10028626-10028863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 143
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr12:16851279-16851030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr12:19715298-19715060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
146, 53
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr12:29448373-29448623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 152
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr12:29411759-29411511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
57, 100
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr12:22047199-22047449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
53, 201
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr12:28650684-28650937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr12:26317189-26317458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr12:27563107-27562834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr12:8710561-8710820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr12:44014110-44013841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 141
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr12:34429413-34429153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr12:3579009-3579291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 215
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr12:25312647-25312364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 186
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr12:39486159-39486441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 161
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr12:12178651-12178943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 90
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr12:24559083-24559378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr12:28011169-28010886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr12:47803884-47804180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr12:2812953-2813252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr12:15530793-15531083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
148, 63
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr12:18769344-18769044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr12:25320653-25320941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 90
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr12:41473825-41474115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr12:20326501-20326801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr12:3055867-3056160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
53, 121
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr12:5800765-5801068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
123, 57
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr12:6720050-6720356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr12:19502690-19502400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 143
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr12:45160782-45160491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr12:45814535-45814234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 198
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr12:12331771-12331481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
163, 55
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:5905787-5906086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 100
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:18020583-18020887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
53, 118
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:19691505-19691204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:25177864-25177568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
35, 202
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:29969305-29969609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
14, 136
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:29995732-29995434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
20, 89
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:30605426-30605136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
57, 137
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:33323769-33323466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:33457878-33458177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
134, 24
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:34673600-34673310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
133, 51
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:37993996-37993702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
48, 195
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr12:39465308-39465609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 146
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr12:3076893-3076596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 142
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr12:18040861-18040577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
119, 67
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr12:36118700-36118996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
52, 141
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr12:41091259-41091564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
54, 150
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr12:41216789-41217097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
44, 149
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr12:41580846-41581141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr12:17716813-17717097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr12:19508842-19508527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
53, 186
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr12:18388552-18388256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 169
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr12:34007029-34007336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 204
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr12:5714358-5714666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
153, 294
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr12:31228304-31228609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 203
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr12:30437980-30438282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr12:18577579-18577897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 90
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr12:17000988-17001316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
53, 219
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr12:31429831-31429504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
153, 53
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr12:37733047-37732713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
153, 39
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr12:34148621-34148289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr12:44518005-44517653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr12:3950621-3950253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
55, 351
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr12:6241039-6241406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr12:6410998-6410644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
152, 84
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr12:31959623-31959971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr12:45820627-45820272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 50
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr12:35368373-35368742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
136, 76
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr12:6489247-6488896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr12:30805588-30805962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
135, 57
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr12:18421197-18420808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 170
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr12:15089222-15089637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 316
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr12:30745443-30745837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 70
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr12:4008553-4008157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr12:9143123-9143510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 154
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr12:11056606-11056994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 145
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr12:17881602-17881978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr12:21393435-21393833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 71
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr12:22516007-22515615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr12:30662220-30661826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr12:17079988-17080393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
55, 170
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr12:35771302-35770892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 211
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr12:43942210-43942602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 54
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr12:9482569-9482170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
53, 115
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr12:18518401-18518804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 53
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr12:42181411-42180996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr12:37770605-37770999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr12:42966730-42967128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr12:17031351-17031747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 55
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr12:18123416-18123805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr12:20777201-20776790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr12:27563651-27563240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 51
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr12:42879436-42879838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
165, 57
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr12:11835972-11836368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
147, 53
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr12:5632144-5631730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
199, 74
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr12:15429870-15429422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr12:15938537-15938095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
115, 57
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr12:16605916-16605497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr12:30170397-30170824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 96
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr12:34466272-34465847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr12:27803320-27802883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
47, 143
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr12:25805381-25804961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr12:44622089-44622547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
153, 53
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chr12:22881781-22882247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 26
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr12:15358058-15358541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 214
               

               
Conread position:
               
2-129
               

               
Cow position:
               
chr12:27039036-27038907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 88
               

               
Conread position:
               
2-133
               

               
Cow position:
               
chr12:27055339-27055472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr12:12976455-12976296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr12:9229751-9229566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 56
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr12:24032737-24032971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
136, 85
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr12:4116235-4116464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
150, 40
               

               
Conread position:
               
2-292
               

               
Cow position:
               
chr12:7977778-7978061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
123, 61
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chr12:43476086-43476382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 140
               

               
Conread position:
               
2-352
               

               
Cow position:
               
chr12:32169267-32169625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 172
               

               
Conread position:
               
2-385
               

               
Cow position:
               
chr12:10895817-10895427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
65, 109
               

               
Conread position:
               
2-394
               

               
Cow position:
               
chr12:36501221-36500815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
52, 88
               

               
Conread position:
               
3-121
               

               
Cow position:
               
chr12:27808742-27808620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr12:32391577-32391820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 210
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr12:17702501-17702253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
51, 121
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr12:2286313-2286559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr12:40110121-40110358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
112, 55
               

               
Conread position:
               
3-247
               

               
Cow position:
               
chr12:3070842-3071088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr12:25455846-25456099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 182
               

               
Conread position:
               
3-297
               

               
Cow position:
               
chr12:2711224-2711527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
113, 212
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr12:6210425-6210128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
144, 206
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr12:8943488-8943194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr12:44596082-44595780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 119
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr12:18943912-18943613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-385
               

               
Cow position:
               
chr12:41083799-41084171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
3-427
               

               
Cow position:
               
chr12:7884923-7884512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
199, 24
               

               
Conread position:
               
3-433
               

               
Cow position:
               
chr12:25561102-25561538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
3-435
               

               
Cow position:
               
chr12:42602508-42602060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
47, 94
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr12:34385781-34385532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 76
               

               
Conread position:
               
4-384
               

               
Cow position:
               
chr12:30578726-30578334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
44, 211
               

               
Conread position:
               
4-394
               

               
Cow position:
               
chr12:15122069-15122457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
5-385
               

               
Cow position:
               
chr12:17270277-17270660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 114
               

               
Conread position:
               
5-433
               

               
Cow position:
               
chr12:40910557-40910109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
48, 87
               

               
Conread position:
               
6-357
               

               
Cow position:
               
chr12:32714777-32715134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 73
               

               
Conread position:
               
6-399
               

               
Cow position:
               
chr12:42283102-42282700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
54, 190
               

               
Conread position:
               
7-273
               

               
Cow position:
               
chr12:24107802-24107541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
147, 110
               

               
Conread position:
               
8-119
               

               
Cow position:
               
chr12:20283647-20283756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
55, 50
               

               
Conread position:
               
8-196
               

               
Cow position:
               
chr12:28804730-28804925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
8-226
               

               
Cow position:
               
chr12:3994686-3994916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
8-230
               

               
Cow position:
               
chr12:17007934-17008166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
41, 190
               

               
Conread position:
               
8-296
               

               
Cow position:
               
chr12:29484153-29483858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 81
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr12:4182957-4182711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
43, 215
               

               
Conread position:
               
13-192
               

               
Cow position:
               
chr12:26869057-26868869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
13-335
               

               
Cow position:
               
chr12:5940085-5940408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 145
               

               
Conread position:
               
14-205
               

               
Cow position:
               
chr12:15240981-15240785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
14-394
               

               
Cow position:
               
chr12:5635705-5635320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
15-299
               

               
Cow position:
               
chr12:45363101-45363392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
39, 137
               

               
Conread position:
               
15-342
               

               
Cow position:
               
chr12:6164285-6163952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 280
               

               
Conread position:
               
16-309
               

               
Cow position:
               
chr12:6275359-6275060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 196
               

               
Conread position:
               
18-296
               

               
Cow position:
               
chr12:23797850-23798127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 105
               

               
Conread position:
               
25-244
               

               
Cow position:
               
chr12:19372352-19372131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 123
               

               
Conread position:
               
25-303
               

               
Cow position:
               
chr12:24211170-24211442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
25-326
               

               
Cow position:
               
chr12:23574524-23574821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 31
               

               
Conread position:
               
27-264
               

               
Cow position:
               
chr12:29770817-29770576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
127, 162
               

               
Conread position:
               
28-335
               

               
Cow position:
               
chr12:18766224-18765906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
27, 68
               

               
Conread position:
               
28-456
               

               
Cow position:
               
chr12:34161174-34161605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
30-296
               

               
Cow position:
               
chr12:28471398-28471675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
114, 51
               

               
Conread position:
               
33-244
               

               
Cow position:
               
chr12:30476239-30476458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 182
               

               
Conread position:
               
33-294
               

               
Cow position:
               
chr12:35377961-35378227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 120
               

               
Conread position:
               
34-298
               

               
Cow position:
               
chr12:35669703-35669440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
34-299
               

               
Cow position:
               
chr12:24577491-24577221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 108
               

               
Conread position:
               
40-267
               

               
Cow position:
               
chr12:38454687-38454908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
53-298
               

               
Cow position:
               
chr12:25452662-25452417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 59
               

               
Conread position:
               
54-197
               

               
Cow position:
               
chr12:13156461-13156606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
54-364
               

               
Cow position:
               
chr12:27037662-27037353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
284, 89
               

               
Conread position:
               
54-394
               

               
Cow position:
               
chr12:33129051-33129386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
253, 89
               

               
Conread position:
               
54-399
               

               
Cow position:
               
chr12:30210265-30210609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
100, 128
               

               
Conread position:
               
54-399
               

               
Cow position:
               
chr12:33851142-33851495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
89, 195
               

               
Conread position:
               
56-297
               

               
Cow position:
               
chr12:3906257-3906502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
68, 154
               

               
Conread position:
               
56-422
               

               
Cow position:
               
chr12:25917478-25917113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
260, 95
               

               
Conread position:
               
62-430
               

               
Cow position:
               
chr12:36544858-36544476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 66
               

               
Conread position:
               
71-424
               

               
Cow position:
               
chr12:4768726-4769085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
81-448
               

               
Cow position:
               
chr12:42685138-42684749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 75
               

               
Conread position:
               
89-437
               

               
Cow position:
               
chr12:38774422-38774067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
141-385
               

               
Cow position:
               
chr12:17269674-17269924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
141-441
               

               
Cow position:
               
chr12:16670140-16670449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
146-437
               

               
Cow position:
               
chr12:19261077-19261373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
165-385
               

               
Cow position:
               
chr12:7902905-7902682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
174-399
               

               
Cow position:
               
chr12:33948808-33949039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               
Show alignments to all cow chromosomes.