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Cow genome map

           
Conread name:
           
Ss1.1-rmgp001_g10.5
        

               
Conread position:
               
1-114
               

               
Cow position:
               
chr21:28919793-28919677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr21:34738430-34738547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
62, 55
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr21:18979014-18978887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 86
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr21:37845916-37845779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr21:20162367-20162503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr21:28029229-28029366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr21:1510905-1511036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr21:35897314-35897456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-149
               

               
Cow position:
               
chr21:38692021-38692166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr21:9998889-9998736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr21:28599603-28599759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr21:26241656-26241811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr21:31159088-31159246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr21:35897794-35897649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr21:36642739-36642890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
122, 91
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr21:36819381-36819230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr21:13395387-13395536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
124, 49
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr21:37208277-37208122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr21:42465661-42465817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 146
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr21:4268705-4268879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr21:23683382-23683560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 43
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr21:7716959-7716760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 179
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr21:34658866-34659061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
123, 90
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr21:15445247-15445045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr21:18494797-18494997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr21:45375447-45375651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
52, 125
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr21:12366219-12366413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr21:28512364-28512558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
134, 113
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr21:29979924-29979728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr21:11706920-11706713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
53, 157
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr21:24094912-24094717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
115, 47
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr21:48251198-48250994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 121
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr21:24887840-24888042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
53, 121
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr21:31253368-31253579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr21:5636889-5636682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 69
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr21:28993794-28993585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr21:33791536-33791329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
114, 57
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr21:42348846-42348638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 192
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr21:1464060-1464270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr21:20910259-20910057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
121, 51
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr21:40244266-40244482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr21:41957342-41957133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr21:2927375-2927155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr21:4276760-4276552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
54, 134
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr21:40058638-40058851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr21:393853-394064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
53, 134
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr21:42023956-42024167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr21:7132631-7132420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 106
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr21:12616971-12617192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
62, 54
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr21:9710872-9710646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr21:28443546-28443302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
57, 177
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr21:21480351-21480112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
53, 121
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr21:31676330-31676572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:30990437-30990204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:37282141-37282377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:39765681-39765920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
71, 58
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr21:5596978-5597229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 154
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr21:16612461-16612702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr21:29942839-29943081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr21:35569555-35569307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 138
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr21:3813651-3813405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr21:6102435-6102183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr21:8351472-8351233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr21:13898020-13898266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
114, 54
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr21:18850387-18850148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 55
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr21:26648174-26647930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr21:47802428-47802181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
71, 57
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr21:12961071-12960819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 180
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr21:20925675-20925425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr21:28881974-28882218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr21:28998074-28997818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 146
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr21:27743574-27743831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr21:42913914-42913649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr21:28211028-28211290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
52, 191
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr21:30150434-30150164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
117, 188
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr21:32535808-32536082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr21:23192686-23192400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:19937101-19936810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 97
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr21:13409991-13409716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
52, 121
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr21:24222706-24222422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr21:24607217-24607501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 159
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr21:23150188-23149902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 57
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr21:24130912-24131188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr21:36163131-36162838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr21:2367172-2367454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr21:18845183-18844890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr21:10727112-10727400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr21:25764466-25764762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
53, 179
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr21:45850879-45850581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
115, 149
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr21:3498330-3498621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr21:35997005-35997300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:4998655-4998365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
100, 199
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:10000912-10001205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 43
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:13035216-13034908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:23586708-23587012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:27124295-27123991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
52, 139
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:28429281-28429574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:30250377-30250074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 161
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:38120939-38121231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:40786502-40786807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 227
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:41597647-41597941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 198
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:42540388-42540092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr21:29002330-29002022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 226
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:395707-395999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:725060-724753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 272
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:5426775-5427072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
62, 55
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:8235713-8235430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
153, 91
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:18828478-18828170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
57, 131
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:23801290-23800996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
137, 53
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:27569329-27569041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:28190860-28191164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
55, 256
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:32339905-32339608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
125, 57
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:34159791-34160084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
71, 159
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:34391138-34390843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
135, 7
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:36795435-36795735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
153, 66
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:42414271-42413965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
51, 76
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:42841761-42841465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
63, 57
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:43357429-43357124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:45355668-45355965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
153, 179
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:45473925-45473626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
62, 54
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:46242408-46242108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 186
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:4905140-4904834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:5153449-5153754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:8618106-8618397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
113, 195
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:13048365-13048060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:13488351-13488660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:22194279-22193964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:28027635-28027929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:33729266-33729563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
115, 74
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:36297310-36297626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:45151791-45151496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
114, 193
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:49700204-49699907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
123, 181
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr21:22856046-22856352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 249
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr21:46143775-46144093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 93
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr21:47067057-47066767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr21:33997390-33997092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
62, 54
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr21:41878308-41878604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
62, 38
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr21:18941997-18941697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr21:10601537-10601238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
187, 59
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr21:1058908-1059214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 87
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr21:45330776-45330468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 211
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr21:4399631-4399946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr21:27146160-27145843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
53, 84
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr21:33562847-33563150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:13738400-13738712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr21:18842406-18842077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr21:19363632-19363293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 91
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr21:30607256-30606918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
116, 86
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr21:33263681-33264012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr21:44754945-44754612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 121
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr21:44671585-44671913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 139
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr21:44515106-44515435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr21:15911232-15911585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr21:23672575-23672932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:1591380-1591746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
54, 323
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:5392711-5392340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:23322252-23321885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
55, 209
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr21:33553-33917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
124, 91
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr21:33350574-33350933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 144
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr21:21169663-21169278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 59
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr21:41579581-41579971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr21:45330109-45329738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
115, 34
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr21:81902-82282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 205
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr21:13128262-13127878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr21:37479788-37480187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
53, 87
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr21:9416074-9416475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr21:10263872-10264260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
153, 55
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr21:19258658-19259041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
52, 76
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr21:24598493-24598871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr21:29214317-29213930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 57
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr21:802462-802094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 57
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr21:13089648-13089235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr21:31691310-31691705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 217
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr21:6833884-6834284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
119, 60
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr21:22860833-22861226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
142, 57
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr21:29069497-29069089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr21:37706575-37706178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
190, 57
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr21:41155693-41156105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr21:42135792-42135385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 213
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr21:643165-643558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr21:46849291-46848898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
115, 90
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr21:44251994-44251601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
204, 79
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:3585526-3585123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:7672964-7673354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
194, 53
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:18568818-18568396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:22718949-22718542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
48, 90
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:23535548-23535954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
113, 41
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:24858143-24858557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 223
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:27229963-27229562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:27863688-27863278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 139
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:30231870-30231455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
53, 186
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:30592472-30592073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 248
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:32559522-32559130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 55
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:37299299-37299701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
31, 59
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:38449620-38449211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:42500864-42501293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:47861026-47861422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
74, 192
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:3361183-3360776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
42, 101
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:5898566-5898140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:6051338-6051774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
55, 90
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:34010559-34010119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
152, 57
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr21:41620951-41621403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 213
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:38918046-38918479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
115, 137
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:40133987-40134424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
14, 197
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr21:30849107-30848673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
153, 28
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr21:20262502-20262058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 226
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr21:41974547-41974071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
52, 254
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chr21:34653914-34654364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr21:13365176-13365635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
153, 54
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr21:11740299-11739814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
53, 160
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr21:17183754-17184219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
2-200
               

               
Cow position:
               
chr21:18790723-18790523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 54
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr21:48108030-48107808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 56
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chr21:2679385-2679667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 175
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr21:15976474-15976761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
113, 42
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr21:2420337-2420629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 54
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr21:31662293-31662598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
52, 174
               

               
Conread position:
               
2-352
               

               
Cow position:
               
chr21:29484816-29485165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 56
               

               
Conread position:
               
2-395
               

               
Cow position:
               
chr21:11645136-11644731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 95
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr21:33982976-33982533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 120
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr21:42145751-42145941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr21:21216307-21216073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
151, 118
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr21:912133-911896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr21:23984450-23984206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 198
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr21:8985383-8985630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
122, 88
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chr21:21077164-21077405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
151, 38
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr21:21223123-21223383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
51, 155
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr21:8549511-8549811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr21:9028454-9028746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr21:17511610-17511908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 92
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr21:28734078-28733783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr21:28442578-28442864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr21:28626075-28626369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chr21:28477455-28477762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 102
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr21:42384339-42384647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
51, 206
               

               
Conread position:
               
3-323
               

               
Cow position:
               
chr21:33210032-33210348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
51, 194
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr21:3818050-3818377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
121, 51
               

               
Conread position:
               
3-356
               

               
Cow position:
               
chr21:7582076-7581708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
51, 204
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chr21:19766688-19767074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
114, 197
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr21:19615007-19615406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr21:3763904-3763510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 96
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr21:20160517-20160919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
69, 55
               

               
Conread position:
               
3-429
               

               
Cow position:
               
chr21:18289496-18289948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 76
               

               
Conread position:
               
3-436
               

               
Cow position:
               
chr21:19196333-19195885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
45, 182
               

               
Conread position:
               
3-442
               

               
Cow position:
               
chr21:28244310-28244752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
3-459
               

               
Cow position:
               
chr21:641418-641886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
4-261
               

               
Cow position:
               
chr21:5344490-5344761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
4-297
               

               
Cow position:
               
chr21:47215346-47215064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
48, 85
               

               
Conread position:
               
4-299
               

               
Cow position:
               
chr21:10007806-10007506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
49, 152
               

               
Conread position:
               
4-299
               

               
Cow position:
               
chr21:41198576-41198266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
4-351
               

               
Cow position:
               
chr21:12801912-12801555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 131
               

               
Conread position:
               
4-395
               

               
Cow position:
               
chr21:38900609-38900998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 180
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr21:23822003-23822393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
5-297
               

               
Cow position:
               
chr21:34739682-34739975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
61, 49
               

               
Conread position:
               
5-299
               

               
Cow position:
               
chr21:40899172-40899472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 139
               

               
Conread position:
               
5-335
               

               
Cow position:
               
chr21:40589647-40589313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 117
               

               
Conread position:
               
5-352
               

               
Cow position:
               
chr21:47764277-47763931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
149, 83
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr21:46264012-46264361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
5-376
               

               
Cow position:
               
chr21:9990350-9990727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
8-116
               

               
Cow position:
               
chr21:20549072-20548964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-244
               

               
Cow position:
               
chr21:3381243-3381000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
99, 77
               

               
Conread position:
               
8-244
               

               
Cow position:
               
chr21:17174983-17175225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
53, 179
               

               
Conread position:
               
8-274
               

               
Cow position:
               
chr21:4795064-4795334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
8-296
               

               
Cow position:
               
chr21:47760614-47760898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 114
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr21:15610990-15611272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 50
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr21:27624551-27624830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
147, 22
               

               
Conread position:
               
8-354
               

               
Cow position:
               
chr21:39401433-39401779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 50
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chr21:44826044-44825699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
10-149
               

               
Cow position:
               
chr21:43631362-43631219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
10-385
               

               
Cow position:
               
chr21:41590716-41590341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
11-301
               

               
Cow position:
               
chr21:45921217-45920923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
93, 198
               

               
Conread position:
               
12-151
               

               
Cow position:
               
chr21:14125888-14126030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
41, 80
               

               
Conread position:
               
13-244
               

               
Cow position:
               
chr21:28989456-28989688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
13-244
               

               
Cow position:
               
chr21:39450325-39450083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
13-356
               

               
Cow position:
               
chr21:18800685-18800343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
141, 157
               

               
Conread position:
               
13-389
               

               
Cow position:
               
chr21:32297667-32297279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 189
               

               
Conread position:
               
13-448
               

               
Cow position:
               
chr21:17643129-17642699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
14-248
               

               
Cow position:
               
chr21:2785935-2785694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 162
               

               
Conread position:
               
14-357
               

               
Cow position:
               
chr21:10633796-10633453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
15-297
               

               
Cow position:
               
chr21:26244777-26245045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
143, 43
               

               
Conread position:
               
15-350
               

               
Cow position:
               
chr21:24642364-24642705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
17-188
               

               
Cow position:
               
chr21:32237145-32237318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 41
               

               
Conread position:
               
21-298
               

               
Cow position:
               
chr21:16187955-16187675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
5, 71
               

               
Conread position:
               
22-299
               

               
Cow position:
               
chr21:44962647-44962930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
32, 120
               

               
Conread position:
               
25-263
               

               
Cow position:
               
chr21:18041987-18041750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
129, 29
               

               
Conread position:
               
25-296
               

               
Cow position:
               
chr21:10005030-10004756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 64
               

               
Conread position:
               
25-298
               

               
Cow position:
               
chr21:35354393-35354663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
28-429
               

               
Cow position:
               
chr21:29978903-29978496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 6
               

               
Conread position:
               
28-433
               

               
Cow position:
               
chr21:11027499-11027083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 168
               

               
Conread position:
               
28-435
               

               
Cow position:
               
chr21:957526-957944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
26, 235
               

               
Conread position:
               
29-433
               

               
Cow position:
               
chr21:48234299-48233901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
120, 77
               

               
Conread position:
               
30-390
               

               
Cow position:
               
chr21:14452098-14452467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
30-435
               

               
Cow position:
               
chr21:937899-938298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
270, 39
               

               
Conread position:
               
31-356
               

               
Cow position:
               
chr21:11359899-11360223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
31-399
               

               
Cow position:
               
chr21:12462109-12461728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
33, 27
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr21:44733299-44733062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
32-400
               

               
Cow position:
               
chr21:20152810-20153199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
33-339
               

               
Cow position:
               
chr21:12723020-12723324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
21, 148
               

               
Conread position:
               
34-298
               

               
Cow position:
               
chr21:20260456-20260187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chr21:34151451-34151804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 228
               

               
Conread position:
               
41-294
               

               
Cow position:
               
chr21:20192774-20193022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
45-292
               

               
Cow position:
               
chr21:17856422-17856670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
7, 74
               

               
Conread position:
               
51-296
               

               
Cow position:
               
chr21:17875310-17875063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 159
               

               
Conread position:
               
51-433
               

               
Cow position:
               
chr21:9477044-9477441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
66, 153
               

               
Conread position:
               
53-296
               

               
Cow position:
               
chr21:12916542-12916291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 160
               

               
Conread position:
               
54-295
               

               
Cow position:
               
chr21:36789682-36789924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
84, 64
               

               
Conread position:
               
54-297
               

               
Cow position:
               
chr21:20418800-20418551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
54-299
               

               
Cow position:
               
chr21:18155685-18155433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
54-439
               

               
Cow position:
               
chr21:30222230-30222623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
56-357
               

               
Cow position:
               
chr21:35437577-35437295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
6, 20
               

               
Conread position:
               
58-208
               

               
Cow position:
               
chr21:27810297-27810453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
59-267
               

               
Cow position:
               
chr21:9360335-9360536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
66-298
               

               
Cow position:
               
chr21:4280776-4280542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
12, 206
               

               
Conread position:
               
70-460
               

               
Cow position:
               
chr21:8206673-8207063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
71-305
               

               
Cow position:
               
chr21:45262910-45262671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
71-385
               

               
Cow position:
               
chr21:10561682-10561360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 139
               

               
Conread position:
               
72-299
               

               
Cow position:
               
chr21:17008884-17009114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 67
               

               
Conread position:
               
78-296
               

               
Cow position:
               
chr21:31090511-31090306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
85, 62
               

               
Conread position:
               
93-384
               

               
Cow position:
               
chr21:16569825-16570119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 127
               

               
Conread position:
               
93-436
               

               
Cow position:
               
chr21:44214048-44214387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 180
               

               
Conread position:
               
95-394
               

               
Cow position:
               
chr21:47719373-47719070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
96, 48
               

               
Conread position:
               
107-385
               

               
Cow position:
               
chr21:8426379-8426667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 121
               

               
Conread position:
               
115-440
               

               
Cow position:
               
chr21:22014133-22014472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 66
               

               
Conread position:
               
146-390
               

               
Cow position:
               
chr21:28030269-28030513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
192, 121
               

               
Conread position:
               
147-297
               

               
Cow position:
               
chr21:47160199-47160349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
165-305
               

               
Cow position:
               
chr21:20183071-20183210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
168-384
               

               
Cow position:
               
chr21:12104367-12104577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
97, 132
               
Show alignments to all cow chromosomes.