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Cow genome map

           
Conread name:
           
Ss1.1-rmgp001_g10.5
        

               
Conread position:
               
1-114
               

               
Cow position:
               
chr6:37331774-37331882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr6:642769-642650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr6:2896559-2896676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr6:21311950-21311831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr6:26837581-26837459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr6:32024530-32024409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
54, 91
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr6:12116245-12116123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 7
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr6:11829974-11830108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr6:47150587-47150716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr6:60467833-60467960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr6:41824018-41823882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr6:29077537-29077670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr6:35769674-35769537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr6:1002426-1002287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 58
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr6:3719198-3719050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 143
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr6:20329829-20329982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr6:7694546-7694390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 40
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr6:15266459-15266310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 78
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr6:5673037-5673196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr6:20605741-20605895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 121
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr6:52025846-52025693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 134
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr6:54140621-54140769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
117, 54
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr6:59015753-59015599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
110, 94
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr6:59302017-59301861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr6:89100-88943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 146
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr6:30826228-30826060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr6:65862494-65862670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr6:51398609-51398790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr6:10605493-10605684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr6:24327327-24327143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
115, 12
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr6:39994653-39994462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr6:6098474-6098282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr6:12623279-12623465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr6:53139121-53138920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr6:54864859-54864668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr6:2012827-2013022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr6:32210819-32210625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
148, 57
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr6:61575412-61575612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr6:66087763-66087956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
115, 58
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr6:24902333-24902138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 78
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr6:2607421-2607622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr6:7103428-7103223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
54, 197
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr6:14201506-14201708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 141
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr6:19329949-19329748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 140
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr6:50445952-50445753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr6:69500138-69500332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr6:57680628-57680421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 142
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr6:40138897-40138708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr6:58439776-58439969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 89
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr6:10422982-10423179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr6:12500668-12500872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 172
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr6:53519815-53519609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
116, 97
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr6:55842353-55842143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 57
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr6:48187773-48187564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
115, 75
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr6:1907348-1907556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr6:59620477-59620685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr6:33276847-33277064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr6:5462241-5462040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
115, 55
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr6:10635984-10636195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 10
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr6:60931092-60930877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 99
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr6:54885105-54884867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr6:24515385-24515157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
42, 72
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr6:58732506-58732260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr6:8187711-8187471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 103
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr6:1889277-1889039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 141
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr6:607070-607313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 140
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr6:34075827-34076081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
117, 56
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr6:16737828-16738072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
113, 127
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr6:25773573-25773332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
115, 52
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr6:42961559-42961304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr6:47625154-47624908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr6:16411003-16411245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
62, 55
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr6:37199737-37199473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr6:47540334-47540585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 241
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr6:53731329-53731578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr6:62925185-62924944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
153, 87
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr6:49685393-49685640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr6:9322967-9323205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 130
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr6:34031476-34031717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
140, 57
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr6:13741504-13741759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
114, 14
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr6:67304609-67304863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 152
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr6:6460347-6460604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
53, 202
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr6:19427257-19427522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 231
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr6:68049243-68049507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr6:14850906-14850637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr6:21542128-21542400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr6:57405316-57405048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 17
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr6:60239584-60239314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr6:18961715-18961430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
55, 272
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr6:24961953-24962236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 139
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr6:31635879-31635593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr6:9375566-9375278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 153
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr6:54369092-54368801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 57
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr6:61515390-61515084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 75
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr6:20157132-20157438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 217
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:130357-130057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 254
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:22503115-22502805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
52, 218
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:35181445-35181151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:40032001-40032296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
51, 6
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:42565494-42565794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
55, 22
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:46865785-46865486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
121, 206
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:51893697-51893394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 203
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:53178445-53178735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 235
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:60442226-60442515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 97
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr6:9452965-9452663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr6:13040261-13040547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
53, 146
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr6:48573075-48572773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr6:60350491-60350185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr6:66874170-66874458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
153, 55
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:3929128-3929426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
154, 22
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:17997507-17997212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
124, 200
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:18049218-18048916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 57
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:19681716-19681417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:23248155-23247858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
53, 146
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:31525856-31526154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 113
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:36652227-36652530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:37149002-37149297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
62, 10
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:37634597-37634904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:38614632-38614920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
153, 73
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:445119-445432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
53, 289
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:1770387-1770089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:1886855-1886558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
115, 57
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:12092176-12091884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:16746148-16746452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
115, 227
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:18988024-18988317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:35471718-35471401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 297
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:37467731-37467431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
115, 131
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:50746789-50747106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
53, 34
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:53401177-53401465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
144, 53
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:54600174-54600457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
202, 59
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:60473943-60474239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 140
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:61113558-61113876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
52, 259
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:65676065-65676352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 88
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:65702593-65702304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 161
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:65711635-65711924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 88
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:66363436-66363126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
115, 102
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr6:49421969-49421679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr6:12551075-12551384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 43
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr6:57164238-57164544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr6:66131116-66131421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
114, 53
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr6:528470-528166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr6:20098156-20097840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr6:59069820-59069504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:63272806-63272487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 210
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr6:7131063-7130757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
195, 53
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr6:10695677-10695983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr6:4864732-4864412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr6:56842967-56843289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
76, 57
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr6:28318217-28318531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
135, 71
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr6:38218480-38218811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr6:38440990-38441317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
146, 108
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr6:8209781-8209460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr6:28977221-28976894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 75
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr6:58073853-58074193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
53, 174
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr6:67214549-67214895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 325
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr6:49002917-49002593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
123, 69
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr6:51463808-51463485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 138
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr6:60057849-60057497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr6:67950767-67951116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
135, 66
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr6:6343234-6343596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr6:14958541-14958177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
49, 339
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr6:5609632-5609281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr6:54430627-54431021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
53, 142
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr6:36470755-36470379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
115, 57
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr6:40713694-40713317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 88
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr6:2547049-2547454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr6:11192644-11192281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
153, 53
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr6:13688003-13687617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 55
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr6:26915138-26915527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 57
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr6:28482823-28483216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
53, 190
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr6:46860360-46859971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 154
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr6:54132626-54133010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 57
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:8562524-8562919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
49, 280
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:17414643-17414246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 383
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:23695805-23696200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
62, 55
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:26728719-26728340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 209
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:29210309-29210678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:29239752-29240133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:36202636-36203022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 57
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:44078329-44078716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:44194737-44194352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:45690786-45690414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
13, 155
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:67187499-67187882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr6:38771103-38771475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
135, 7
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr6:10400087-10399698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
131, 52
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr6:12337792-12338200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
123, 324
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr6:19401670-19402055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
113, 58
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr6:21231344-21231722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr6:39358533-39358133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 55
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr6:13367103-13367493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr6:35842465-35842871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
114, 53
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr6:38641306-38641705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr6:49398808-49398418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 210
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr6:63720007-63720403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
153, 67
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:51835208-51835614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
113, 80
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:66433756-66434170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:3952330-3952738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
153, 84
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:8965898-8966305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 7
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:10106188-10105766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 379
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:15242642-15243056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
54, 148
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:15305391-15305788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 10
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:17090403-17090798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 121
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:32867398-32867004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:38207688-38207269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 186
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:47305147-47305559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
62, 55
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:47519854-47520271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
53, 359
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:60144369-60143982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
74, 61
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr6:54365514-54365112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:7989605-7989200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr6:21737074-21736670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
153, 51
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr6:53460764-53460344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 404
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:46557864-46558297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
108, 67
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr6:64431747-64432179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
150, 139
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr6:15301009-15300590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
69, 56
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr6:55282482-55282042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
46, 104
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr6:9008803-9008367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
153, 202
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr6:21456882-21456423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr6:65870832-65871284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
53, 304
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr6:5095742-5095286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr6:56849826-56850274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
137, 53
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr6:7190311-7189863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
114, 102
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr6:35415714-35415261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr6:61269138-61269575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr6:31535763-31535308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 154
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chr6:14949673-14949216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
52, 83
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chr6:21534867-21535316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr6:16700067-16700534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
114, 204
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr6:18447701-18447237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr6:54807032-54807243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 188
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr6:22877347-22877116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
113, 11
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chr6:7539383-7539676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 101
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr6:68376493-68376216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
194, 65
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr6:9751231-9750949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 56
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr6:25407583-25407283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
120, 199
               

               
Conread position:
               
2-357
               

               
Cow position:
               
chr6:54867320-54867685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr6:51581449-51581059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 172
               

               
Conread position:
               
2-394
               

               
Cow position:
               
chr6:38853849-38853446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 196
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr6:23532472-23532863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
65, 100
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chr6:63252114-63251669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
120, 204
               

               
Conread position:
               
2-462
               

               
Cow position:
               
chr6:24031184-24031639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 164
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr6:10332286-10332083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 104
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr6:54647712-54647511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr6:44377075-44377285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr6:7824571-7824786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 140
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr6:48344138-48344381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr6:44098894-44099163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr6:16423509-16423803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 94
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr6:48281805-48282098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
60, 161
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr6:24781754-24781451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
51, 200
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chr6:60859496-60859192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 230
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr6:47339538-47339241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
184, 64
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr6:8788227-8787914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
51, 85
               

               
Conread position:
               
3-356
               

               
Cow position:
               
chr6:21869835-21869482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
153, 64
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr6:10176493-10176131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
3-385
               

               
Cow position:
               
chr6:61631809-61631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
26, 219
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr6:41733437-41733845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr6:611371-611760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr6:34196338-34195945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
149, 55
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr6:36196024-36196420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
3-432
               

               
Cow position:
               
chr6:323500-323052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
35, 190
               

               
Conread position:
               
3-433
               

               
Cow position:
               
chr6:32121721-32122147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr6:30315249-30315035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr6:8804717-8804475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
134, 54
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr6:5958210-5957970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
4-296
               

               
Cow position:
               
chr6:28414840-28414541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 265
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr6:35613603-35613309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
4-299
               

               
Cow position:
               
chr6:52412665-52412968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
56, 194
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr6:6400759-6401121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 102
               

               
Conread position:
               
4-395
               

               
Cow position:
               
chr6:54490929-54490535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
4-397
               

               
Cow position:
               
chr6:6067866-6067491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
111, 49
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr6:24468580-24468182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 43
               

               
Conread position:
               
4-433
               

               
Cow position:
               
chr6:50090452-50090896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 146
               

               
Conread position:
               
4-434
               

               
Cow position:
               
chr6:28084205-28083777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 125
               

               
Conread position:
               
5-133
               

               
Cow position:
               
chr6:22986179-22986049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 74
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr6:15923187-15922992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
5-295
               

               
Cow position:
               
chr6:52248323-52248025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
51, 205
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chr6:47799110-47799401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
120, 61
               

               
Conread position:
               
5-399
               

               
Cow position:
               
chr6:50577332-50577732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
7-299
               

               
Cow position:
               
chr6:37246616-37246333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
46, 154
               

               
Conread position:
               
8-114
               

               
Cow position:
               
chr6:20929892-20929782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
8-193
               

               
Cow position:
               
chr6:45160477-45160290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
128, 59
               

               
Conread position:
               
8-194
               

               
Cow position:
               
chr6:46570933-46571122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
133, 82
               

               
Conread position:
               
8-247
               

               
Cow position:
               
chr6:14696557-14696316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
8-261
               

               
Cow position:
               
chr6:49410874-49410626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
182, 50
               

               
Conread position:
               
8-297
               

               
Cow position:
               
chr6:24004363-24004643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
165, 22
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr6:53651855-53652148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
7, 74
               

               
Conread position:
               
8-383
               

               
Cow position:
               
chr6:52478612-52478212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
8-385
               

               
Cow position:
               
chr6:8637090-8637478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 50
               

               
Conread position:
               
9-298
               

               
Cow position:
               
chr6:25008530-25008827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
9-385
               

               
Cow position:
               
chr6:1703630-1703998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
45, 135
               

               
Conread position:
               
9-399
               

               
Cow position:
               
chr6:35990407-35990022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
9-447
               

               
Cow position:
               
chr6:4383308-4383732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr6:67968797-67968512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
13-229
               

               
Cow position:
               
chr6:3978847-3978623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
13-369
               

               
Cow position:
               
chr6:5114226-5113870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 6
               

               
Conread position:
               
13-437
               

               
Cow position:
               
chr6:44566232-44566681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 185
               

               
Conread position:
               
13-449
               

               
Cow position:
               
chr6:47574725-47575158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
126, 181
               

               
Conread position:
               
14-236
               

               
Cow position:
               
chr6:18968952-18968734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
15-345
               

               
Cow position:
               
chr6:1499460-1499795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 80
               

               
Conread position:
               
16-244
               

               
Cow position:
               
chr6:61137194-61137429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 106
               

               
Conread position:
               
18-298
               

               
Cow position:
               
chr6:30973866-30974150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 111
               

               
Conread position:
               
18-433
               

               
Cow position:
               
chr6:8125157-8125579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
98, 42
               

               
Conread position:
               
19-301
               

               
Cow position:
               
chr6:60819341-60819624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
97, 185
               

               
Conread position:
               
21-298
               

               
Cow position:
               
chr6:54991175-54990893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
5, 85
               

               
Conread position:
               
21-400
               

               
Cow position:
               
chr6:47355652-47356042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
163, 141
               

               
Conread position:
               
25-298
               

               
Cow position:
               
chr6:35993409-35993692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 181
               

               
Conread position:
               
25-449
               

               
Cow position:
               
chr6:11246596-11247039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
111, 33
               

               
Conread position:
               
26-298
               

               
Cow position:
               
chr6:15447375-15447090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
26-342
               

               
Cow position:
               
chr6:47640604-47640280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 114
               

               
Conread position:
               
28-296
               

               
Cow position:
               
chr6:60850555-60850274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
26, 196
               

               
Conread position:
               
29-244
               

               
Cow position:
               
chr6:44984162-44984384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
29-298
               

               
Cow position:
               
chr6:899454-899185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
125, 169
               

               
Conread position:
               
30-289
               

               
Cow position:
               
chr6:59108779-59109044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
30-436
               

               
Cow position:
               
chr6:15243088-15243516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 374
               

               
Conread position:
               
30-459
               

               
Cow position:
               
chr6:26450154-26450581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
31-294
               

               
Cow position:
               
chr6:12543095-12542827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
32, 27
               

               
Conread position:
               
32-244
               

               
Cow position:
               
chr6:5445462-5445677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
33-296
               

               
Cow position:
               
chr6:55763694-55763959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
33-382
               

               
Cow position:
               
chr6:6965543-6965196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
267, 11
               

               
Conread position:
               
33-385
               

               
Cow position:
               
chr6:120079-120441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
33-385
               

               
Cow position:
               
chr6:27888188-27888548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
34-367
               

               
Cow position:
               
chr6:48112045-48112379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
35-298
               

               
Cow position:
               
chr6:58590116-58590381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 110
               

               
Conread position:
               
35-385
               

               
Cow position:
               
chr6:19264658-19264297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
36-310
               

               
Cow position:
               
chr6:7128558-7128282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
6, 56
               

               
Conread position:
               
37-279
               

               
Cow position:
               
chr6:63011324-63011080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 149
               

               
Conread position:
               
37-462
               

               
Cow position:
               
chr6:60739859-60740294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 163
               

               
Conread position:
               
41-399
               

               
Cow position:
               
chr6:38609816-38610191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 159
               

               
Conread position:
               
44-395
               

               
Cow position:
               
chr6:9219124-9219474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
110, 149
               

               
Conread position:
               
45-298
               

               
Cow position:
               
chr6:46283146-46282896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
45-299
               

               
Cow position:
               
chr6:54036283-54036034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 90
               

               
Conread position:
               
54-296
               

               
Cow position:
               
chr6:4692119-4691869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 229
               

               
Conread position:
               
54-298
               

               
Cow position:
               
chr6:61608372-61608620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
54-300
               

               
Cow position:
               
chr6:21399892-21399646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 103
               

               
Conread position:
               
54-385
               

               
Cow position:
               
chr6:57571338-57571679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 269
               

               
Conread position:
               
54-395
               

               
Cow position:
               
chr6:60118011-60118353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
54-399
               

               
Cow position:
               
chr6:17313595-17313955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
101, 126
               

               
Conread position:
               
56-398
               

               
Cow position:
               
chr6:38640094-38640447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
85, 223
               

               
Conread position:
               
57-399
               

               
Cow position:
               
chr6:29000058-28999740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
210, 30
               

               
Conread position:
               
68-436
               

               
Cow position:
               
chr6:32287513-32287884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
86, 140
               

               
Conread position:
               
69-266
               

               
Cow position:
               
chr6:37376647-37376438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
71-305
               

               
Cow position:
               
chr6:45065136-45064902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
71-306
               

               
Cow position:
               
chr6:50975936-50976164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
71-435
               

               
Cow position:
               
chr6:35725973-35726342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 135
               

               
Conread position:
               
73-429
               

               
Cow position:
               
chr6:25615222-25614841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
77-298
               

               
Cow position:
               
chr6:58597620-58597398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 91
               

               
Conread position:
               
83-459
               

               
Cow position:
               
chr6:59603317-59602939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
89-399
               

               
Cow position:
               
chr6:7119714-7119413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
298, 46
               

               
Conread position:
               
90-394
               

               
Cow position:
               
chr6:60274109-60273800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
104-298
               

               
Cow position:
               
chr6:37332018-37332218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
124-399
               

               
Cow position:
               
chr6:694216-693928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
200, 95
               

               
Conread position:
               
136-385
               

               
Cow position:
               
chr6:17068703-17068451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
19, 179
               

               
Conread position:
               
141-385
               

               
Cow position:
               
chr6:60468190-60468437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
54, 8
               

               
Conread position:
               
146-433
               

               
Cow position:
               
chr6:2078863-2078566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 280
               
Show alignments to all cow chromosomes.