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Cow genome map

           
Conread name:
           
Ss1.1-rmgp012_h16.5
        

               
Conread position:
               
8-160
               

               
Cow position:
               
chr11:374907-375057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
17-361
               

               
Cow position:
               
chr11:30954750-30955096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
18-184
               

               
Cow position:
               
chr11:70709804-70709639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 35
               

               
Conread position:
               
24-316
               

               
Cow position:
               
chr11:79814960-79814665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
25-379
               

               
Cow position:
               
chr11:38638878-38639225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
26-336
               

               
Cow position:
               
chr11:28691997-28691685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
27-327
               

               
Cow position:
               
chr11:14308397-14308698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
59, 31
               

               
Conread position:
               
29-334
               

               
Cow position:
               
chr11:68912896-68913208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 83
               

               
Conread position:
               
30-308
               

               
Cow position:
               
chr11:42793213-42792932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
31-184
               

               
Cow position:
               
chr11:27722125-27722277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 17
               

               
Conread position:
               
33-349
               

               
Cow position:
               
chr11:11232686-11232372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 14
               

               
Conread position:
               
34-270
               

               
Cow position:
               
chr11:2514826-2514590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
34-356
               

               
Cow position:
               
chr11:30639182-30638859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
34-368
               

               
Cow position:
               
chr11:59702251-59702594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
35-171
               

               
Cow position:
               
chr11:26277323-26277190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr11:35238596-35238748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
35-228
               

               
Cow position:
               
chr11:63520540-63520736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-265
               

               
Cow position:
               
chr11:35668951-35668712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
35-265
               

               
Cow position:
               
chr11:62808881-62808653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
35-274
               

               
Cow position:
               
chr11:32609759-32610006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-275
               

               
Cow position:
               
chr11:53130579-53130822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
107, 18
               

               
Conread position:
               
35-299
               

               
Cow position:
               
chr11:6154179-6154440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-310
               

               
Cow position:
               
chr11:8827547-8827822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-316
               

               
Cow position:
               
chr11:15503868-15504161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
35-325
               

               
Cow position:
               
chr11:13190987-13191292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
35-327
               

               
Cow position:
               
chr11:63157145-63156858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
35-336
               

               
Cow position:
               
chr11:5032010-5031706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
35-336
               

               
Cow position:
               
chr11:36659045-36658753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 20
               

               
Conread position:
               
35-336
               

               
Cow position:
               
chr11:65762829-65762521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
35-337
               

               
Cow position:
               
chr11:35684730-35684430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-337
               

               
Cow position:
               
chr11:46746402-46746704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 20
               

               
Conread position:
               
35-354
               

               
Cow position:
               
chr11:69119067-69119382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
35-355
               

               
Cow position:
               
chr11:11125431-11125752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 10
               

               
Conread position:
               
35-363
               

               
Cow position:
               
chr11:67236175-67236497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
35-368
               

               
Cow position:
               
chr11:53778380-53778719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-370
               

               
Cow position:
               
chr11:64334625-64334940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
268, 23
               

               
Conread position:
               
35-370
               

               
Cow position:
               
chr11:83066263-83066594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 20
               

               
Conread position:
               
35-414
               

               
Cow position:
               
chr11:16342474-16342069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
36-316
               

               
Cow position:
               
chr11:21437396-21437674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
39-355
               

               
Cow position:
               
chr11:2907751-2907439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
45-271
               

               
Cow position:
               
chr11:85764728-85764940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
141, 40
               

               
Conread position:
               
45-310
               

               
Cow position:
               
chr11:44255796-44256065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
39, 163
               

               
Conread position:
               
45-310
               

               
Cow position:
               
chr11:72314322-72314587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 131
               

               
Conread position:
               
45-313
               

               
Cow position:
               
chr11:21856736-21857009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 246
               

               
Conread position:
               
45-316
               

               
Cow position:
               
chr11:39163053-39163328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
40, 163
               

               
Conread position:
               
45-324
               

               
Cow position:
               
chr11:6580591-6580889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
45-414
               

               
Cow position:
               
chr11:41271916-41272297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
47-276
               

               
Cow position:
               
chr11:49410557-49410332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 89
               

               
Conread position:
               
47-310
               

               
Cow position:
               
chr11:16910588-16910316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
39, 173
               

               
Conread position:
               
47-314
               

               
Cow position:
               
chr11:21549274-21549527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
47-325
               

               
Cow position:
               
chr11:33349922-33349643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
47-326
               

               
Cow position:
               
chr11:62880847-62880573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
47-337
               

               
Cow position:
               
chr11:58102995-58102691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
47-355
               

               
Cow position:
               
chr11:20238452-20238766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
47-366
               

               
Cow position:
               
chr11:77766823-77766498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
48-164
               

               
Cow position:
               
chr11:30466840-30466723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
48-172
               

               
Cow position:
               
chr11:10294375-10294493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
48-177
               

               
Cow position:
               
chr11:71705624-71705492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
48-182
               

               
Cow position:
               
chr11:37118264-37118401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
48-184
               

               
Cow position:
               
chr11:62376658-62376522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
48-258
               

               
Cow position:
               
chr11:12555641-12555412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
48-265
               

               
Cow position:
               
chr11:12528823-12528607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
48-272
               

               
Cow position:
               
chr11:17112847-17112624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
48-277
               

               
Cow position:
               
chr11:59673057-59672829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 138
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr11:60302178-60301944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
48-294
               

               
Cow position:
               
chr11:81174669-81174912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
48-316
               

               
Cow position:
               
chr11:35723756-35724017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
37, 107
               

               
Conread position:
               
48-327
               

               
Cow position:
               
chr11:20491351-20491627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 37
               

               
Conread position:
               
48-328
               

               
Cow position:
               
chr11:48544222-48544498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 36
               

               
Conread position:
               
48-329
               

               
Cow position:
               
chr11:35154048-35153762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 171
               

               
Conread position:
               
48-331
               

               
Cow position:
               
chr11:5226962-5226666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 178
               

               
Conread position:
               
48-331
               

               
Cow position:
               
chr11:76369742-76369458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
48-332
               

               
Cow position:
               
chr11:42003177-42002883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
88, 183
               

               
Conread position:
               
48-335
               

               
Cow position:
               
chr11:48697227-48697512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 34
               

               
Conread position:
               
48-336
               

               
Cow position:
               
chr11:51144497-51144783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
62, 37
               

               
Conread position:
               
48-336
               

               
Cow position:
               
chr11:58588124-58588414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 172
               

               
Conread position:
               
48-349
               

               
Cow position:
               
chr11:84385867-84385556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 184
               

               
Conread position:
               
48-351
               

               
Cow position:
               
chr11:8525334-8525029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 161
               

               
Conread position:
               
48-351
               

               
Cow position:
               
chr11:70484082-70483766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 200
               

               
Conread position:
               
48-351
               

               
Cow position:
               
chr11:81406378-81406081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
173, 37
               

               
Conread position:
               
48-356
               

               
Cow position:
               
chr11:3233860-3234166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 166
               

               
Conread position:
               
48-356
               

               
Cow position:
               
chr11:20761624-20761933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 42
               

               
Conread position:
               
48-356
               

               
Cow position:
               
chr11:30191949-30192269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 166
               

               
Conread position:
               
48-356
               

               
Cow position:
               
chr11:41986264-41985955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
48-356
               

               
Cow position:
               
chr11:44234134-44234446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
48-356
               

               
Cow position:
               
chr11:52381091-52380781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
48-359
               

               
Cow position:
               
chr11:64044018-64044327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 139
               

               
Conread position:
               
48-370
               

               
Cow position:
               
chr11:15632780-15632453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
37, 242
               

               
Conread position:
               
48-379
               

               
Cow position:
               
chr11:18244162-18243819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
37, 156
               

               
Conread position:
               
48-379
               

               
Cow position:
               
chr11:49934962-49934617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
48-419
               

               
Cow position:
               
chr11:42358904-42359277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr11:1599167-1599375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
49-271
               

               
Cow position:
               
chr11:5677502-5677728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
49-283
               

               
Cow position:
               
chr11:32431917-32432164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 178
               

               
Conread position:
               
49-327
               

               
Cow position:
               
chr11:10302407-10302143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 6
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr11:7415065-7414790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
36, 6
               

               
Conread position:
               
49-356
               

               
Cow position:
               
chr11:76114436-76114733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 36
               

               
Conread position:
               
49-366
               

               
Cow position:
               
chr11:1362699-1362365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
51-356
               

               
Cow position:
               
chr11:12111685-12111368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
52-172
               

               
Cow position:
               
chr11:15608510-15608389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
52-177
               

               
Cow position:
               
chr11:6620508-6620378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
52-182
               

               
Cow position:
               
chr11:22103538-22103668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
52-184
               

               
Cow position:
               
chr11:31885304-31885432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
52-200
               

               
Cow position:
               
chr11:10364413-10364259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
52-221
               

               
Cow position:
               
chr11:53719728-53719901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
52-229
               

               
Cow position:
               
chr11:84198889-84198703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
52-239
               

               
Cow position:
               
chr11:81066798-81066614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 44
               

               
Conread position:
               
52-248
               

               
Cow position:
               
chr11:5526791-5526589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
33, 174
               

               
Conread position:
               
52-262
               

               
Cow position:
               
chr11:71455571-71455788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
33, 161
               

               
Conread position:
               
52-265
               

               
Cow position:
               
chr11:62965770-62965549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
52-269
               

               
Cow position:
               
chr11:41239491-41239266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 158
               

               
Conread position:
               
52-270
               

               
Cow position:
               
chr11:2050363-2050583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
52-277
               

               
Cow position:
               
chr11:18620022-18619800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
107, 32
               

               
Conread position:
               
52-281
               

               
Cow position:
               
chr11:17968792-17968566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
222, 32
               

               
Conread position:
               
52-282
               

               
Cow position:
               
chr11:18389079-18388857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
52-289
               

               
Cow position:
               
chr11:83196282-83196521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
52-300
               

               
Cow position:
               
chr11:75355394-75355653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
52-303
               

               
Cow position:
               
chr11:65079733-65079989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 150
               

               
Conread position:
               
52-304
               

               
Cow position:
               
chr11:27386556-27386302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
52-304
               

               
Cow position:
               
chr11:65430845-65431091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr11:1849382-1849115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr11:31417219-31417477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr11:33294008-33293723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
32, 248
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr11:50236184-50235921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
52-327
               

               
Cow position:
               
chr11:77745467-77745192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
52-328
               

               
Cow position:
               
chr11:27746704-27746984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 164
               

               
Conread position:
               
52-335
               

               
Cow position:
               
chr11:17192498-17192212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
52-335
               

               
Cow position:
               
chr11:32198723-32199011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 50
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chr11:41549551-41549262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
133, 37
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chr11:50951334-50951625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 241
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chr11:60470396-60470128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
52-337
               

               
Cow position:
               
chr11:952052-952339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 235
               

               
Conread position:
               
52-351
               

               
Cow position:
               
chr11:50778154-50778453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 160
               

               
Conread position:
               
52-351
               

               
Cow position:
               
chr11:78381263-78380979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr11:15016829-15017146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr11:17036769-17036438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
33, 182
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr11:21844352-21844049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 207
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr11:27248275-27248580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 33
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr11:35580037-35580350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 241
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr11:44031783-44032101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 246
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr11:50153035-50152724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 239
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr11:52297440-52297131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 189
               

               
Conread position:
               
52-356
               

               
Cow position:
               
chr11:10992065-10992357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
52-356
               

               
Cow position:
               
chr11:43897921-43898229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 107
               

               
Conread position:
               
52-358
               

               
Cow position:
               
chr11:45646810-45646500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
52-361
               

               
Cow position:
               
chr11:47544911-47545226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 239
               

               
Conread position:
               
52-363
               

               
Cow position:
               
chr11:30879463-30879766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 164
               

               
Conread position:
               
52-368
               

               
Cow position:
               
chr11:18707030-18706722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
52-368
               

               
Cow position:
               
chr11:65157624-65157305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
52-373
               

               
Cow position:
               
chr11:83043577-83043255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
52-375
               

               
Cow position:
               
chr11:19500994-19500682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 27
               

               
Conread position:
               
52-377
               

               
Cow position:
               
chr11:17083514-17083199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 20
               

               
Conread position:
               
52-379
               

               
Cow position:
               
chr11:22978076-22977755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 33
               

               
Conread position:
               
52-379
               

               
Cow position:
               
chr11:62490217-62490550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
52-379
               

               
Cow position:
               
chr11:68910064-68909727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
52-380
               

               
Cow position:
               
chr11:27405285-27404944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 233
               

               
Conread position:
               
52-385
               

               
Cow position:
               
chr11:11557952-11558291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
52-420
               

               
Cow position:
               
chr11:82108104-82107735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
53-248
               

               
Cow position:
               
chr11:62749966-62749774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
32, 126
               

               
Conread position:
               
53-269
               

               
Cow position:
               
chr11:67951178-67950969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
32, 99
               

               
Conread position:
               
53-327
               

               
Cow position:
               
chr11:53313782-53313513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
53-370
               

               
Cow position:
               
chr11:6234094-6233773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
54-356
               

               
Cow position:
               
chr11:25386848-25387159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
54-358
               

               
Cow position:
               
chr11:64090301-64090005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 132
               

               
Conread position:
               
54-380
               

               
Cow position:
               
chr11:38071140-38071472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
55-307
               

               
Cow position:
               
chr11:2811937-2811690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 29
               

               
Conread position:
               
55-319
               

               
Cow position:
               
chr11:36113944-36114205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
55-325
               

               
Cow position:
               
chr11:15467256-15467516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
55-368
               

               
Cow position:
               
chr11:68905282-68904969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
127, 16
               

               
Conread position:
               
55-374
               

               
Cow position:
               
chr11:15373635-15373948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
55-377
               

               
Cow position:
               
chr11:43361010-43360671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 230
               

               
Conread position:
               
56-329
               

               
Cow position:
               
chr11:36286486-36286757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
56-416
               

               
Cow position:
               
chr11:76395568-76395923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
57-166
               

               
Cow position:
               
chr11:83033912-83033802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
57-328
               

               
Cow position:
               
chr11:3720040-3720314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 231
               

               
Conread position:
               
57-370
               

               
Cow position:
               
chr11:77750979-77750667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
58-156
               

               
Cow position:
               
chr11:75510444-75510345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-168
               

               
Cow position:
               
chr11:64405547-64405436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-170
               

               
Cow position:
               
chr11:16795363-16795252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 64
               

               
Conread position:
               
58-184
               

               
Cow position:
               
chr11:55348052-55348180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
58-184
               

               
Cow position:
               
chr11:58600650-58600778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
58-205
               

               
Cow position:
               
chr11:84890963-84890809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-214
               

               
Cow position:
               
chr11:2281500-2281344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
58-215
               

               
Cow position:
               
chr11:40860927-40860758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-225
               

               
Cow position:
               
chr11:41438435-41438258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
58-226
               

               
Cow position:
               
chr11:10877027-10877201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
102, 26
               

               
Conread position:
               
58-228
               

               
Cow position:
               
chr11:74929569-74929747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-230
               

               
Cow position:
               
chr11:35276090-35276267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
58-249
               

               
Cow position:
               
chr11:48901288-48901099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
58-249
               

               
Cow position:
               
chr11:75748224-75748417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
58-252
               

               
Cow position:
               
chr11:21819655-21819455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
58-252
               

               
Cow position:
               
chr11:25319840-25320042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
58-252
               

               
Cow position:
               
chr11:49105847-49106043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
58-256
               

               
Cow position:
               
chr11:17574531-17574343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
58-262
               

               
Cow position:
               
chr11:37100570-37100361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
58-262
               

               
Cow position:
               
chr11:77207838-77208038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr11:4389215-4389422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr11:8105572-8105784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr11:41577219-41577021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr11:41983657-41983458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr11:47165348-47165142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr11:63516613-63516826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr11:65857647-65857859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr11:77241163-77241369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
58-267
               

               
Cow position:
               
chr11:30110757-30110963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
58-270
               

               
Cow position:
               
chr11:17553557-17553343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 65
               

               
Conread position:
               
58-270
               

               
Cow position:
               
chr11:71846559-71846346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
27, 169
               

               
Conread position:
               
58-276
               

               
Cow position:
               
chr11:4412228-4412012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
24, 129
               

               
Conread position:
               
58-277
               

               
Cow position:
               
chr11:85189594-85189397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 106
               

               
Conread position:
               
58-278
               

               
Cow position:
               
chr11:73478410-73478620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
58-281
               

               
Cow position:
               
chr11:171907-171687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
58-281
               

               
Cow position:
               
chr11:7444829-7445062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
58-281
               

               
Cow position:
               
chr11:38829001-38829221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 147
               

               
Conread position:
               
58-282
               

               
Cow position:
               
chr11:16251459-16251228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
58-282
               

               
Cow position:
               
chr11:38193941-38194173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-282
               

               
Cow position:
               
chr11:48932794-48932571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
58-282
               

               
Cow position:
               
chr11:62979267-62979506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-283
               

               
Cow position:
               
chr11:18372867-18373092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
58-283
               

               
Cow position:
               
chr11:38810561-38810332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 164
               

               
Conread position:
               
58-291
               

               
Cow position:
               
chr11:2309663-2309897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
127, 26
               

               
Conread position:
               
58-293
               

               
Cow position:
               
chr11:50197655-50197406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 170
               

               
Conread position:
               
58-300
               

               
Cow position:
               
chr11:18210559-18210315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
27, 165
               

               
Conread position:
               
58-303
               

               
Cow position:
               
chr11:61246668-61246423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
58-304
               

               
Cow position:
               
chr11:46044475-46044728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
26, 149
               

               
Conread position:
               
58-306
               

               
Cow position:
               
chr11:14094635-14094381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 53
               

               
Conread position:
               
58-310
               

               
Cow position:
               
chr11:4489169-4488914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 184
               

               
Conread position:
               
58-315
               

               
Cow position:
               
chr11:30295067-30295328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 231
               

               
Conread position:
               
58-316
               

               
Cow position:
               
chr11:3726075-3726337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
58-316
               

               
Cow position:
               
chr11:4436122-4436368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
58-316
               

               
Cow position:
               
chr11:8563360-8563100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 184
               

               
Conread position:
               
58-316
               

               
Cow position:
               
chr11:17860364-17860107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
85, 23
               

               
Conread position:
               
58-316
               

               
Cow position:
               
chr11:36309620-36309364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
58-316
               

               
Cow position:
               
chr11:56728736-56728998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
58-316
               

               
Cow position:
               
chr11:81281734-81282006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
27, 242
               

               
Conread position:
               
58-317
               

               
Cow position:
               
chr11:19787935-19788172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
58-319
               

               
Cow position:
               
chr11:6400283-6400012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
58-320
               

               
Cow position:
               
chr11:67804538-67804802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 152
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr11:4674661-4674390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 162
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr11:36981357-36981619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr11:51687936-51687673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr11:51756105-51756355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 44
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr11:55744263-55744523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr11:61202952-61203221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
27, 156
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr11:66733625-66733885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr11:80788121-80787851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
58-324
               

               
Cow position:
               
chr11:4732128-4732399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
58-324
               

               
Cow position:
               
chr11:18341249-18340984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:3780635-3780360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 236
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:5416689-5416942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:18588791-18588528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:19755446-19755708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
27, 125
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:29916327-29916599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:30720887-30721156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:30764269-30764548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 185
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:31413240-31413516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:31525653-31525936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:40467334-40467066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 139
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:45872529-45872253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:48672491-48672770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:57725039-57724767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
27, 166
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:70382906-70382633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
27, 116
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:83357180-83357452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
27, 158
               

               
Conread position:
               
58-326
               

               
Cow position:
               
chr11:2788169-2788452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 26
               

               
Conread position:
               
58-326
               

               
Cow position:
               
chr11:85723491-85723756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
58-327
               

               
Cow position:
               
chr11:8495826-8496092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 132
               

               
Conread position:
               
58-327
               

               
Cow position:
               
chr11:10687098-10686827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 167
               

               
Conread position:
               
58-328
               

               
Cow position:
               
chr11:24937451-24937726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
58-329
               

               
Cow position:
               
chr11:23138272-23137993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 24
               

               
Conread position:
               
58-329
               

               
Cow position:
               
chr11:61859110-61858841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
58-329
               

               
Cow position:
               
chr11:63847639-63847908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
58-331
               

               
Cow position:
               
chr11:5485797-5486078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
28, 32
               

               
Conread position:
               
58-331
               

               
Cow position:
               
chr11:5961102-5961370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
58-331
               

               
Cow position:
               
chr11:35347968-35347688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
28, 169
               

               
Conread position:
               
58-331
               

               
Cow position:
               
chr11:42836171-42835886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
58-331
               

               
Cow position:
               
chr11:59902677-59902955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 169
               

               
Conread position:
               
58-332
               

               
Cow position:
               
chr11:18591644-18591368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
58-333
               

               
Cow position:
               
chr11:42016849-42016573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
27, 166
               

               
Conread position:
               
58-333
               

               
Cow position:
               
chr11:63065443-63065719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 156
               

               
Conread position:
               
58-333
               

               
Cow position:
               
chr11:75480237-75479957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
58-334
               

               
Cow position:
               
chr11:1486077-1485793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
58-334
               

               
Cow position:
               
chr11:25791902-25791627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
58-334
               

               
Cow position:
               
chr11:79728884-79728600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 156
               

               
Conread position:
               
58-335
               

               
Cow position:
               
chr11:70273090-70273375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr11:27939276-27939552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr11:36986751-36987019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr11:56821467-56821173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
28, 242
               

               
Conread position:
               
58-337
               

               
Cow position:
               
chr11:70619844-70620115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
58-344
               

               
Cow position:
               
chr11:30912203-30911926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
26, 150
               

               
Conread position:
               
58-344
               

               
Cow position:
               
chr11:62019809-62019513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
27, 246
               

               
Conread position:
               
58-347
               

               
Cow position:
               
chr11:30120872-30120580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
58-348
               

               
Cow position:
               
chr11:56518523-56518228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 213
               

               
Conread position:
               
58-350
               

               
Cow position:
               
chr11:10095134-10095427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 164
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr11:4207102-4207396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr11:8840951-8840658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr11:17321447-17321736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 158
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr11:19247405-19247114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr11:23128750-23128454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr11:38236033-38236337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr11:46748077-46747775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 235
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr11:62155416-62155724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr11:64029467-64029182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr11:87155304-87155605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
27, 156
               

               
Conread position:
               
58-353
               

               
Cow position:
               
chr11:17889937-17889641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
82, 28
               

               
Conread position:
               
58-353
               

               
Cow position:
               
chr11:58990300-58990580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
58-354
               

               
Cow position:
               
chr11:34829989-34829697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
58-355
               

               
Cow position:
               
chr11:10213776-10213479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
58-355
               

               
Cow position:
               
chr11:29960094-29960385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 51
               

               
Conread position:
               
58-355
               

               
Cow position:
               
chr11:33341357-33341055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
58-355
               

               
Cow position:
               
chr11:44036505-44036809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
58-355
               

               
Cow position:
               
chr11:55052665-55052961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 145
               

               
Conread position:
               
58-355
               

               
Cow position:
               
chr11:83230598-83230311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 49
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:40970-41270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:2925501-2925210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 118
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:3282841-3283114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:7924800-7924503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 129
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:15285828-15285524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 231
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:17278874-17278585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:18086548-18086257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:23232724-23232429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:26535564-26535877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:36112207-36112510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:36182478-36182785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:36238571-36238868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 19
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:36799509-36799217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 34
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:48271984-48272291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 235
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:48474497-48474794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:54334124-54334419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
88, 20
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:62151092-62150803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:62620174-62620467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 26
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr11:66041063-66041369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
58-358
               

               
Cow position:
               
chr11:1625425-1625132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
159, 26
               

               
Conread position:
               
58-358
               

               
Cow position:
               
chr11:15772933-15772623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 228
               

               
Conread position:
               
58-358
               

               
Cow position:
               
chr11:22499562-22499274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
58-362
               

               
Cow position:
               
chr11:39115283-39115590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
58-363
               

               
Cow position:
               
chr11:55333698-55334006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
58-364
               

               
Cow position:
               
chr11:50072739-50073036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
272, 31
               

               
Conread position:
               
58-364
               

               
Cow position:
               
chr11:70838513-70838179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
58-366
               

               
Cow position:
               
chr11:61454745-61454416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 231
               

               
Conread position:
               
58-367
               

               
Cow position:
               
chr11:2092130-2092439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 23
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr11:17831438-17831118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 178
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr11:44575947-44575640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr11:53147751-53147429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr11:59872715-59873032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr11:65607904-65607586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 166
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr11:68207048-68206737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 22
               

               
Conread position:
               
58-370
               

               
Cow position:
               
chr11:34467392-34467671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
271, 21
               

               
Conread position:
               
58-370
               

               
Cow position:
               
chr11:34962851-34963174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 22
               

               
Conread position:
               
58-370
               

               
Cow position:
               
chr11:42044201-42043892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 105
               

               
Conread position:
               
58-370
               

               
Cow position:
               
chr11:63482636-63482326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
58-377
               

               
Cow position:
               
chr11:13043352-13043032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
58-377
               

               
Cow position:
               
chr11:30354856-30355168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
58-377
               

               
Cow position:
               
chr11:34145127-34144813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr11:4663249-4662928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr11:11469844-11469527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr11:21728478-21728162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 24
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr11:30708292-30708631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr11:36647150-36647454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 155
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr11:38874613-38874290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr11:55761668-55761983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr11:77546208-77546526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr11:81162642-81162321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 55
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr11:86926130-86925837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
58-381
               

               
Cow position:
               
chr11:39462407-39462741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 133
               

               
Conread position:
               
58-387
               

               
Cow position:
               
chr11:33310761-33311099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
58-388
               

               
Cow position:
               
chr11:8339615-8339285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
58-395
               

               
Cow position:
               
chr11:66188531-66188187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
58-399
               

               
Cow position:
               
chr11:71168788-71168459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
58-412
               

               
Cow position:
               
chr11:69810693-69811054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
58-416
               

               
Cow position:
               
chr11:47899066-47899431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 129
               

               
Conread position:
               
58-419
               

               
Cow position:
               
chr11:40486145-40485794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
59-194
               

               
Cow position:
               
chr11:11534113-11533978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
59-252
               

               
Cow position:
               
chr11:3704110-3704290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
59-271
               

               
Cow position:
               
chr11:36301290-36301073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 172
               

               
Conread position:
               
59-280
               

               
Cow position:
               
chr11:37068513-37068303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
59-282
               

               
Cow position:
               
chr11:70459365-70459579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
59-287
               

               
Cow position:
               
chr11:3175169-3175409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
26, 156
               

               
Conread position:
               
59-325
               

               
Cow position:
               
chr11:67931705-67931435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
59-325
               

               
Cow position:
               
chr11:81300822-81300563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
26, 88
               

               
Conread position:
               
59-335
               

               
Cow position:
               
chr11:18572594-18572869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
59-336
               

               
Cow position:
               
chr11:30475789-30476068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
59-349
               

               
Cow position:
               
chr11:31352782-31352468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 248
               

               
Conread position:
               
59-351
               

               
Cow position:
               
chr11:23251813-23251508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
26, 162
               

               
Conread position:
               
59-352
               

               
Cow position:
               
chr11:36766452-36766732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
59-355
               

               
Cow position:
               
chr11:34120988-34121288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 228
               

               
Conread position:
               
59-356
               

               
Cow position:
               
chr11:377858-377551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 234
               

               
Conread position:
               
59-356
               

               
Cow position:
               
chr11:40458911-40459199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
59-356
               

               
Cow position:
               
chr11:80564095-80564383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
59-364
               

               
Cow position:
               
chr11:11752729-11752424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
59-367
               

               
Cow position:
               
chr11:33348394-33348086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
59-368
               

               
Cow position:
               
chr11:61958959-61958642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 162
               

               
Conread position:
               
59-379
               

               
Cow position:
               
chr11:18698665-18698996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 166
               

               
Conread position:
               
59-416
               

               
Cow position:
               
chr11:44636969-44636599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
59-418
               

               
Cow position:
               
chr11:56654337-56654712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
61-248
               

               
Cow position:
               
chr11:43914002-43914197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
61-334
               

               
Cow position:
               
chr11:49231666-49231941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 162
               

               
Conread position:
               
61-356
               

               
Cow position:
               
chr11:34113055-34113356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 79
               

               
Conread position:
               
61-377
               

               
Cow position:
               
chr11:70609580-70609910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
61-379
               

               
Cow position:
               
chr11:259388-259050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
24, 186
               

               
Conread position:
               
62-184
               

               
Cow position:
               
chr11:16843212-16843090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 86
               

               
Conread position:
               
62-224
               

               
Cow position:
               
chr11:25165237-25165400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
121, 17
               

               
Conread position:
               
62-248
               

               
Cow position:
               
chr11:59370808-59370996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
62-249
               

               
Cow position:
               
chr11:64932503-64932310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
122, 20
               

               
Conread position:
               
62-259
               

               
Cow position:
               
chr11:55117266-55117457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 124
               

               
Conread position:
               
62-262
               

               
Cow position:
               
chr11:21830559-21830352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
62-263
               

               
Cow position:
               
chr11:35543663-35543866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 166
               

               
Conread position:
               
62-265
               

               
Cow position:
               
chr11:31900841-31901045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
62-265
               

               
Cow position:
               
chr11:62045192-62045395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
62-274
               

               
Cow position:
               
chr11:36672257-36672036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
22, 171
               

               
Conread position:
               
62-277
               

               
Cow position:
               
chr11:71309735-71309518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
62-322
               

               
Cow position:
               
chr11:42292042-42291784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
62-323
               

               
Cow position:
               
chr11:9463622-9463891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
23, 162
               

               
Conread position:
               
62-325
               

               
Cow position:
               
chr11:44818890-44819151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 135
               

               
Conread position:
               
62-325
               

               
Cow position:
               
chr11:51293616-51293350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
62-328
               

               
Cow position:
               
chr11:83323367-83323624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 15
               

               
Conread position:
               
62-331
               

               
Cow position:
               
chr11:23385451-23385178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
62-334
               

               
Cow position:
               
chr11:30165300-30165577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 152
               

               
Conread position:
               
62-336
               

               
Cow position:
               
chr11:8988436-8988161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
62-336
               

               
Cow position:
               
chr11:9221932-9221662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
62-336
               

               
Cow position:
               
chr11:72375895-72375610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 241
               

               
Conread position:
               
62-349
               

               
Cow position:
               
chr11:21894360-21894079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
62-351
               

               
Cow position:
               
chr11:8428288-8428597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
62-351
               

               
Cow position:
               
chr11:77758967-77758675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
62-353
               

               
Cow position:
               
chr11:58400056-58400336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
113, 22
               

               
Conread position:
               
62-354
               

               
Cow position:
               
chr11:7589984-7590277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 162
               

               
Conread position:
               
62-355
               

               
Cow position:
               
chr11:17660888-17661173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
119, 16
               

               
Conread position:
               
62-355
               

               
Cow position:
               
chr11:62239542-62239834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
62-356
               

               
Cow position:
               
chr11:23586428-23586729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 228
               

               
Conread position:
               
62-356
               

               
Cow position:
               
chr11:29947133-29946823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
62-356
               

               
Cow position:
               
chr11:35213373-35213077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
62-356
               

               
Cow position:
               
chr11:71493067-71492771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 166
               

               
Conread position:
               
62-368
               

               
Cow position:
               
chr11:866093-866391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
23, 148
               

               
Conread position:
               
62-370
               

               
Cow position:
               
chr11:44642492-44642187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
62-377
               

               
Cow position:
               
chr11:80820205-80819896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
23, 52
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr11:24601764-24602086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 119
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr11:42083273-42083579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr11:45631971-45631654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 206
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr11:67345849-67345533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
62-382
               

               
Cow position:
               
chr11:40818845-40818509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
62-386
               

               
Cow position:
               
chr11:33414027-33414359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
62-416
               

               
Cow position:
               
chr11:30934218-30934573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
23, 43
               

               
Conread position:
               
63-282
               

               
Cow position:
               
chr11:37347268-37347494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 164
               

               
Conread position:
               
63-310
               

               
Cow position:
               
chr11:5088056-5087803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
6, 161
               

               
Conread position:
               
63-325
               

               
Cow position:
               
chr11:81913929-81913665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
63-350
               

               
Cow position:
               
chr11:19592203-19591911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
22, 164
               

               
Conread position:
               
63-355
               

               
Cow position:
               
chr11:67747076-67747369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 149
               

               
Conread position:
               
63-377
               

               
Cow position:
               
chr11:32436123-32436446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 231
               

               
Conread position:
               
64-258
               

               
Cow position:
               
chr11:33364137-33364334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 148
               

               
Conread position:
               
64-263
               

               
Cow position:
               
chr11:1485565-1485362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 150
               

               
Conread position:
               
64-334
               

               
Cow position:
               
chr11:27913070-27913352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
64-335
               

               
Cow position:
               
chr11:10620531-10620259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 66
               

               
Conread position:
               
64-351
               

               
Cow position:
               
chr11:38334310-38334609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
20, 155
               

               
Conread position:
               
64-358
               

               
Cow position:
               
chr11:41809682-41809400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 137
               

               
Conread position:
               
64-370
               

               
Cow position:
               
chr11:35363290-35363585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 152
               

               
Conread position:
               
64-377
               

               
Cow position:
               
chr11:3393416-3393098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 60
               

               
Conread position:
               
64-404
               

               
Cow position:
               
chr11:45277361-45277008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 155
               

               
Conread position:
               
65-280
               

               
Cow position:
               
chr11:38598978-38598758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
65-280
               

               
Cow position:
               
chr11:68631898-68631678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 157
               

               
Conread position:
               
65-287
               

               
Cow position:
               
chr11:68570876-68570647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
65-295
               

               
Cow position:
               
chr11:22342008-22341773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
22, 142
               

               
Conread position:
               
65-316
               

               
Cow position:
               
chr11:15500975-15500721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 143
               

               
Conread position:
               
65-316
               

               
Cow position:
               
chr11:21472530-21472279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
20, 134
               

               
Conread position:
               
65-316
               

               
Cow position:
               
chr11:26551211-26551464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
65-327
               

               
Cow position:
               
chr11:8828832-8828573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
65-327
               

               
Cow position:
               
chr11:42519538-42519793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
65-331
               

               
Cow position:
               
chr11:32749904-32750175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 151
               

               
Conread position:
               
65-339
               

               
Cow position:
               
chr11:27681294-27681570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
65-358
               

               
Cow position:
               
chr11:27932062-27932372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
65-367
               

               
Cow position:
               
chr11:27764949-27765250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 222
               

               
Conread position:
               
65-420
               

               
Cow position:
               
chr11:64904792-64905152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
66-226
               

               
Cow position:
               
chr11:30866936-30867103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
66-265
               

               
Cow position:
               
chr11:47586551-47586351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
66-284
               

               
Cow position:
               
chr11:16000723-16000947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
103, 18
               

               
Conread position:
               
66-331
               

               
Cow position:
               
chr11:53773470-53773746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
20, 230
               

               
Conread position:
               
66-336
               

               
Cow position:
               
chr11:43430652-43430387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
66-347
               

               
Cow position:
               
chr11:81337175-81336902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
66-356
               

               
Cow position:
               
chr11:28643876-28644178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
66-379
               

               
Cow position:
               
chr11:49152748-49153066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
66-379
               

               
Cow position:
               
chr11:65409360-65409045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 214
               

               
Conread position:
               
66-379
               

               
Cow position:
               
chr11:73354256-73353941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 19
               

               
Conread position:
               
67-265
               

               
Cow position:
               
chr11:79995023-79994822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 162
               

               
Conread position:
               
67-286
               

               
Cow position:
               
chr11:7538845-7538614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 142
               

               
Conread position:
               
67-310
               

               
Cow position:
               
chr11:32421688-32421448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
67-324
               

               
Cow position:
               
chr11:32377986-32378244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
67-325
               

               
Cow position:
               
chr11:17495948-17495684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
18, 225
               

               
Conread position:
               
67-325
               

               
Cow position:
               
chr11:19593617-19593875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 94
               

               
Conread position:
               
67-334
               

               
Cow position:
               
chr11:18526094-18525829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 118
               

               
Conread position:
               
67-348
               

               
Cow position:
               
chr11:70745740-70745451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 115
               

               
Conread position:
               
67-356
               

               
Cow position:
               
chr11:14470169-14470456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
67-420
               

               
Cow position:
               
chr11:31866411-31866764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
68-244
               

               
Cow position:
               
chr11:47850826-47851004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
68-313
               

               
Cow position:
               
chr11:79985913-79986161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
69-204
               

               
Cow position:
               
chr11:33001797-33001932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
17, 104
               

               
Conread position:
               
69-217
               

               
Cow position:
               
chr11:57111511-57111354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
69-249
               

               
Cow position:
               
chr11:61299181-61298997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
69-316
               

               
Cow position:
               
chr11:36203034-36203285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
69-316
               

               
Cow position:
               
chr11:67454687-67454938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 221
               

               
Conread position:
               
69-331
               

               
Cow position:
               
chr11:65058814-65058548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 168
               

               
Conread position:
               
69-336
               

               
Cow position:
               
chr11:12950149-12949879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
16, 219
               

               
Conread position:
               
69-341
               

               
Cow position:
               
chr11:17221650-17221392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
69-358
               

               
Cow position:
               
chr11:6245114-6245407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
15, 150
               

               
Conread position:
               
69-370
               

               
Cow position:
               
chr11:45898255-45897942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 152
               

               
Conread position:
               
70-277
               

               
Cow position:
               
chr11:43644301-43644089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
70-303
               

               
Cow position:
               
chr11:17508761-17508519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 203
               

               
Conread position:
               
70-310
               

               
Cow position:
               
chr11:12260384-12260630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 220
               

               
Conread position:
               
70-332
               

               
Cow position:
               
chr11:46329299-46329565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
70-349
               

               
Cow position:
               
chr11:66425086-66424796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
71-416
               

               
Cow position:
               
chr11:79960989-79960622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 223
               

               
Conread position:
               
72-272
               

               
Cow position:
               
chr11:55821906-55821698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 176
               

               
Conread position:
               
72-306
               

               
Cow position:
               
chr11:48042238-48041994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 156
               

               
Conread position:
               
72-307
               

               
Cow position:
               
chr11:14649513-14649274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
72-323
               

               
Cow position:
               
chr11:3702751-3703006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr11:7458486-7458225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
9, 223
               

               
Conread position:
               
73-185
               

               
Cow position:
               
chr11:79019721-79019608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
73-305
               

               
Cow position:
               
chr11:67207540-67207767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 151
               

               
Conread position:
               
74-336
               

               
Cow position:
               
chr11:56892623-56892886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
12, 211
               

               
Conread position:
               
74-370
               

               
Cow position:
               
chr11:70601018-70600722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 187
               

               
Conread position:
               
75-334
               

               
Cow position:
               
chr11:48383331-48383588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
76-336
               

               
Cow position:
               
chr11:35775143-35775407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 160
               

               
Conread position:
               
76-336
               

               
Cow position:
               
chr11:70836565-70836307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
76-362
               

               
Cow position:
               
chr11:74316518-74316805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
77-220
               

               
Cow position:
               
chr11:922120-922263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
8, 103
               

               
Conread position:
               
77-306
               

               
Cow position:
               
chr11:955171-955407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 214
               

               
Conread position:
               
77-313
               

               
Cow position:
               
chr11:2874194-2874443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 138
               

               
Conread position:
               
77-327
               

               
Cow position:
               
chr11:5075414-5075168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
77-327
               

               
Cow position:
               
chr11:80761575-80761318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
8, 217
               

               
Conread position:
               
77-329
               

               
Cow position:
               
chr11:63434250-63433996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 138
               

               
Conread position:
               
77-334
               

               
Cow position:
               
chr11:13592542-13592803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 136
               

               
Conread position:
               
77-334
               

               
Cow position:
               
chr11:41215552-41215800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
77-351
               

               
Cow position:
               
chr11:36194099-36194381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
7, 145
               

               
Conread position:
               
77-353
               

               
Cow position:
               
chr11:83397705-83397993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
8, 149
               

               
Conread position:
               
77-367
               

               
Cow position:
               
chr11:48649786-48650074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 131
               

               
Conread position:
               
78-325
               

               
Cow position:
               
chr11:20684770-20684514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 217
               

               
Conread position:
               
79-216
               

               
Cow position:
               
chr11:19508103-19508246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
5, 133
               

               
Conread position:
               
79-336
               

               
Cow position:
               
chr11:26256592-26256342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 113
               

               
Conread position:
               
79-368
               

               
Cow position:
               
chr11:13499820-13500119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 190
               

               
Conread position:
               
82-265
               

               
Cow position:
               
chr11:62016465-62016282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 113
               

               
Conread position:
               
82-336
               

               
Cow position:
               
chr11:77128474-77128730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
82-356
               

               
Cow position:
               
chr11:8148085-8147808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
83-211
               

               
Cow position:
               
chr11:84924282-84924148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
83-261
               

               
Cow position:
               
chr11:81614826-81614645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
64, 135
               

               
Conread position:
               
83-299
               

               
Cow position:
               
chr11:8936672-8936463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
136, 168
               

               
Conread position:
               
83-306
               

               
Cow position:
               
chr11:57171014-57170791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
83-323
               

               
Cow position:
               
chr11:3920493-3920249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 132
               

               
Conread position:
               
83-323
               

               
Cow position:
               
chr11:34616080-34616315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
83-334
               

               
Cow position:
               
chr11:25620584-25620323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
83-336
               

               
Cow position:
               
chr11:63202424-63202179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 40
               

               
Conread position:
               
83-351
               

               
Cow position:
               
chr11:3833541-3833278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr11:34646404-34646679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 81
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr11:73924747-73924472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
98, 74
               

               
Conread position:
               
83-356
               

               
Cow position:
               
chr11:17227833-17227554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 206
               

               
Conread position:
               
83-359
               

               
Cow position:
               
chr11:35874179-35873909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 102
               

               
Conread position:
               
83-368
               

               
Cow position:
               
chr11:66572688-66572396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
83-379
               

               
Cow position:
               
chr11:13061417-13061125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
246, 103
               

               
Conread position:
               
83-414
               

               
Cow position:
               
chr11:22932159-22931818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
84-327
               

               
Cow position:
               
chr11:7497831-7497587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
84-327
               

               
Cow position:
               
chr11:69402434-69402189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
101, 71
               

               
Conread position:
               
84-336
               

               
Cow position:
               
chr11:70278296-70278043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 162
               

               
Conread position:
               
84-356
               

               
Cow position:
               
chr11:77705573-77705841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
84-379
               

               
Cow position:
               
chr11:2917772-2917467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 135
               

               
Conread position:
               
85-277
               

               
Cow position:
               
chr11:19238342-19238145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
75, 125
               

               
Conread position:
               
85-334
               

               
Cow position:
               
chr11:1157459-1157711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
86-183
               

               
Cow position:
               
chr11:82232231-82232328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-259
               

               
Cow position:
               
chr11:35148977-35149155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
86-328
               

               
Cow position:
               
chr11:82796470-82796228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
98, 142
               

               
Conread position:
               
86-329
               

               
Cow position:
               
chr11:70086141-70086394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
86-360
               

               
Cow position:
               
chr11:80923508-80923229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 204
               

               
Conread position:
               
87-187
               

               
Cow position:
               
chr11:72292050-72292150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-327
               

               
Cow position:
               
chr11:33754088-33753849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 139
               

               
Conread position:
               
87-354
               

               
Cow position:
               
chr11:42296803-42296531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
87-360
               

               
Cow position:
               
chr11:23272185-23271909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 86
               

               
Conread position:
               
88-356
               

               
Cow position:
               
chr11:40573516-40573245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 138
               

               
Conread position:
               
89-305
               

               
Cow position:
               
chr11:67136621-67136393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
48, 80
               

               
Conread position:
               
89-319
               

               
Cow position:
               
chr11:32055366-32055131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 127
               

               
Conread position:
               
89-327
               

               
Cow position:
               
chr11:32439133-32438892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 51
               

               
Conread position:
               
89-331
               

               
Cow position:
               
chr11:7873966-7874203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
48, 69
               

               
Conread position:
               
89-336
               

               
Cow position:
               
chr11:31894094-31894341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
16, 202
               

               
Conread position:
               
89-337
               

               
Cow position:
               
chr11:26845762-26845523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
240, 23
               

               
Conread position:
               
89-351
               

               
Cow position:
               
chr11:29659386-29659645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
89-368
               

               
Cow position:
               
chr11:67600601-67600887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 201
               

               
Conread position:
               
89-420
               

               
Cow position:
               
chr11:81611588-81611933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
90-265
               

               
Cow position:
               
chr11:81605447-81605627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 136
               

               
Conread position:
               
90-323
               

               
Cow position:
               
chr11:3419252-3419028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
90-351
               

               
Cow position:
               
chr11:5286-5549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
91-317
               

               
Cow position:
               
chr11:30596806-30597043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
14, 205
               

               
Conread position:
               
91-335
               

               
Cow position:
               
chr11:51044110-51043866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
92, 200
               

               
Conread position:
               
92-283
               

               
Cow position:
               
chr11:33468534-33468727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
92-316
               

               
Cow position:
               
chr11:4323177-4323407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
50, 128
               

               
Conread position:
               
92-326
               

               
Cow position:
               
chr11:53511903-53512140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
44, 128
               

               
Conread position:
               
92-334
               

               
Cow position:
               
chr11:40258587-40258344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
92-336
               

               
Cow position:
               
chr11:33526886-33527122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
51, 89
               

               
Conread position:
               
92-341
               

               
Cow position:
               
chr11:64638713-64638451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 200
               

               
Conread position:
               
92-351
               

               
Cow position:
               
chr11:67550554-67550296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
16, 147
               

               
Conread position:
               
92-354
               

               
Cow position:
               
chr11:48496766-48496504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr11:2083958-2084234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 204
               

               
Conread position:
               
92-367
               

               
Cow position:
               
chr11:39118580-39118859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
92-370
               

               
Cow position:
               
chr11:76606505-76606775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
89, 47
               

               
Conread position:
               
93-271
               

               
Cow position:
               
chr11:15525776-15525972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
93-272
               

               
Cow position:
               
chr11:59156056-59155871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
92, 107
               

               
Conread position:
               
93-277
               

               
Cow position:
               
chr11:7333900-7333709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
71, 154
               

               
Conread position:
               
93-277
               

               
Cow position:
               
chr11:24967279-24967464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 62
               

               
Conread position:
               
93-284
               

               
Cow position:
               
chr11:36496669-36496862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
66, 139
               

               
Conread position:
               
93-302
               

               
Cow position:
               
chr11:10076590-10076803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
93-310
               

               
Cow position:
               
chr11:66896977-66896755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 121
               

               
Conread position:
               
93-316
               

               
Cow position:
               
chr11:26483536-26483760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
93-316
               

               
Cow position:
               
chr11:38670505-38670730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
49, 173
               

               
Conread position:
               
93-325
               

               
Cow position:
               
chr11:18371622-18371379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 211
               

               
Conread position:
               
93-325
               

               
Cow position:
               
chr11:26067360-26067125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
93-325
               

               
Cow position:
               
chr11:38845434-38845205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
93-329
               

               
Cow position:
               
chr11:71341629-71341403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
93-330
               

               
Cow position:
               
chr11:83687605-83687370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
93-331
               

               
Cow position:
               
chr11:36058627-36058861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 117
               

               
Conread position:
               
93-334
               

               
Cow position:
               
chr11:36848749-36848984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 120
               

               
Conread position:
               
93-335
               

               
Cow position:
               
chr11:71501312-71501063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
93-349
               

               
Cow position:
               
chr11:73512606-73512359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
93-353
               

               
Cow position:
               
chr11:62225810-62226074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
93-356
               

               
Cow position:
               
chr11:30924972-30925245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 202
               

               
Conread position:
               
93-357
               

               
Cow position:
               
chr11:60143476-60143210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
93-362
               

               
Cow position:
               
chr11:2344097-2344349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
93-364
               

               
Cow position:
               
chr11:47004173-47004456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
93-364
               

               
Cow position:
               
chr11:63469702-63469974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
91, 28
               

               
Conread position:
               
93-368
               

               
Cow position:
               
chr11:9270905-9270624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 144
               

               
Conread position:
               
93-368
               

               
Cow position:
               
chr11:80530188-80530461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
44, 133
               

               
Conread position:
               
93-379
               

               
Cow position:
               
chr11:47193345-47193620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
93-420
               

               
Cow position:
               
chr11:77682989-77683337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
59, 68
               

               
Conread position:
               
94-252
               

               
Cow position:
               
chr11:30753648-30753492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
94-314
               

               
Cow position:
               
chr11:24585003-24585223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
94-332
               

               
Cow position:
               
chr11:81143727-81143475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
45, 192
               

               
Conread position:
               
94-395
               

               
Cow position:
               
chr11:26144275-26143962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 144
               

               
Conread position:
               
95-214
               

               
Cow position:
               
chr11:68172933-68173052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
95-327
               

               
Cow position:
               
chr11:45282752-45282988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
95-336
               

               
Cow position:
               
chr11:65159625-65159383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
69, 92
               

               
Conread position:
               
95-336
               

               
Cow position:
               
chr11:65826914-65826681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 33
               

               
Conread position:
               
95-336
               

               
Cow position:
               
chr11:82940797-82940555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
95-346
               

               
Cow position:
               
chr11:16233111-16232858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 95
               

               
Conread position:
               
95-350
               

               
Cow position:
               
chr11:2509476-2509224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
200, 47
               

               
Conread position:
               
95-351
               

               
Cow position:
               
chr11:71868784-71868517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
48, 140
               

               
Conread position:
               
95-353
               

               
Cow position:
               
chr11:7394966-7395216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
44, 125
               

               
Conread position:
               
95-355
               

               
Cow position:
               
chr11:46413400-46413657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
65, 127
               

               
Conread position:
               
95-356
               

               
Cow position:
               
chr11:63909833-63909576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
95-364
               

               
Cow position:
               
chr11:9837277-9837002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
47, 170
               

               
Conread position:
               
95-364
               

               
Cow position:
               
chr11:53553064-53553314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 18
               

               
Conread position:
               
95-368
               

               
Cow position:
               
chr11:28993904-28993637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
95-370
               

               
Cow position:
               
chr11:37804730-37804447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 195
               

               
Conread position:
               
95-371
               

               
Cow position:
               
chr11:34032378-34032095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 131
               

               
Conread position:
               
95-376
               

               
Cow position:
               
chr11:80012015-80011738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
52, 117
               

               
Conread position:
               
95-377
               

               
Cow position:
               
chr11:30830791-30830502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 195
               

               
Conread position:
               
95-383
               

               
Cow position:
               
chr11:85294072-85294359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
96-325
               

               
Cow position:
               
chr11:74380020-74380247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 142
               

               
Conread position:
               
96-328
               

               
Cow position:
               
chr11:71008961-71009189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
40, 101
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr11:18144986-18144747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
68, 43
               

               
Conread position:
               
96-343
               

               
Cow position:
               
chr11:4060227-4059987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
96-356
               

               
Cow position:
               
chr11:1380507-1380766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
96-370
               

               
Cow position:
               
chr11:18509193-18508924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 128
               

               
Conread position:
               
96-416
               

               
Cow position:
               
chr11:5648588-5648900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
232, 40
               

               
Conread position:
               
97-265
               

               
Cow position:
               
chr11:47109796-47109972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
97-281
               

               
Cow position:
               
chr11:52936080-52935898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
97-334
               

               
Cow position:
               
chr11:76889875-76890113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 122
               

               
Conread position:
               
97-356
               

               
Cow position:
               
chr11:8545186-8544927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 61
               

               
Conread position:
               
97-399
               

               
Cow position:
               
chr11:38577948-38577643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 132
               

               
Conread position:
               
97-414
               

               
Cow position:
               
chr11:18484338-18484022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
113, 46
               

               
Conread position:
               
98-325
               

               
Cow position:
               
chr11:59862040-59862265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
41, 99
               

               
Conread position:
               
98-356
               

               
Cow position:
               
chr11:77319240-77319505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
80, 192
               

               
Conread position:
               
98-370
               

               
Cow position:
               
chr11:41176122-41175850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 122
               

               
Conread position:
               
99-329
               

               
Cow position:
               
chr11:16907214-16906989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 43
               

               
Conread position:
               
99-329
               

               
Cow position:
               
chr11:21438044-21438270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
83, 121
               

               
Conread position:
               
99-336
               

               
Cow position:
               
chr11:30209992-30209753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
100-228
               

               
Cow position:
               
chr11:29266370-29266506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
100-300
               

               
Cow position:
               
chr11:85986341-85986140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
101-283
               

               
Cow position:
               
chr11:41134235-41134049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
101-317
               

               
Cow position:
               
chr11:61427437-61427644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr11:66289390-66289607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 87
               

               
Conread position:
               
101-379
               

               
Cow position:
               
chr11:75874921-75874646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 184
               

               
Conread position:
               
102-327
               

               
Cow position:
               
chr11:11646899-11647132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 150
               

               
Conread position:
               
103-336
               

               
Cow position:
               
chr11:45619182-45619422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
103-355
               

               
Cow position:
               
chr11:80556053-80556309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
78, 138
               

               
Conread position:
               
104-325
               

               
Cow position:
               
chr11:70114303-70114530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
104-355
               

               
Cow position:
               
chr11:81135328-81135078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
105-356
               

               
Cow position:
               
chr11:48295867-48296121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
58, 115
               

               
Conread position:
               
109-277
               

               
Cow position:
               
chr11:65843255-65843086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
109-302
               

               
Cow position:
               
chr11:30543456-30543654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
109-305
               

               
Cow position:
               
chr11:56349177-56348985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 117
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr11:33287114-33286901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr11:42919389-42919169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 183
               

               
Conread position:
               
109-328
               

               
Cow position:
               
chr11:80756945-80756720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
27, 114
               

               
Conread position:
               
109-368
               

               
Cow position:
               
chr11:40479016-40478750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 122
               

               
Conread position:
               
109-379
               

               
Cow position:
               
chr11:15958139-15958419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
110-311
               

               
Cow position:
               
chr11:32818226-32818023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
110-336
               

               
Cow position:
               
chr11:20602067-20602296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
110-351
               

               
Cow position:
               
chr11:63435357-63435606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 184
               

               
Conread position:
               
110-356
               

               
Cow position:
               
chr11:63917627-63917386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
110-364
               

               
Cow position:
               
chr11:49148876-49149148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
26, 117
               

               
Conread position:
               
110-379
               

               
Cow position:
               
chr11:64048258-64048518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
218, 73
               

               
Conread position:
               
111-336
               

               
Cow position:
               
chr11:32693631-32693414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
111-355
               

               
Cow position:
               
chr11:2576063-2575814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 177
               

               
Conread position:
               
111-371
               

               
Cow position:
               
chr11:63499483-63499219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 113
               

               
Conread position:
               
111-414
               

               
Cow position:
               
chr11:65445007-65444707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 182
               

               
Conread position:
               
111-417
               

               
Cow position:
               
chr11:71390723-71390410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
72, 126
               

               
Conread position:
               
114-278
               

               
Cow position:
               
chr11:6101457-6101622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
114-299
               

               
Cow position:
               
chr11:21428150-21427961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
114-332
               

               
Cow position:
               
chr11:6202290-6202507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
67, 108
               

               
Conread position:
               
114-337
               

               
Cow position:
               
chr11:39499202-39499427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 49
               

               
Conread position:
               
114-355
               

               
Cow position:
               
chr11:44222734-44222975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
83, 57
               

               
Conread position:
               
114-356
               

               
Cow position:
               
chr11:13075947-13075721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
215, 34
               

               
Conread position:
               
114-370
               

               
Cow position:
               
chr11:45434930-45435184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 99
               

               
Conread position:
               
114-370
               

               
Cow position:
               
chr11:46580199-46580458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
66, 170
               

               
Conread position:
               
114-379
               

               
Cow position:
               
chr11:51729132-51729400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 110
               

               
Conread position:
               
114-379
               

               
Cow position:
               
chr11:55494523-55494791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 167
               

               
Conread position:
               
115-325
               

               
Cow position:
               
chr11:31337225-31337445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 181
               

               
Conread position:
               
115-365
               

               
Cow position:
               
chr11:5201805-5201554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 102
               

               
Conread position:
               
115-379
               

               
Cow position:
               
chr11:56187464-56187733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 160
               

               
Conread position:
               
116-370
               

               
Cow position:
               
chr11:17493324-17493587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 169
               

               
Conread position:
               
118-272
               

               
Cow position:
               
chr11:37546666-37546511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
70, 104
               

               
Conread position:
               
118-282
               

               
Cow position:
               
chr11:75918190-75918349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 89
               

               
Conread position:
               
118-334
               

               
Cow position:
               
chr11:32254371-32254149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
118-355
               

               
Cow position:
               
chr11:69075756-69076000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 153
               

               
Conread position:
               
118-363
               

               
Cow position:
               
chr11:18851766-18852005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
211, 68
               

               
Conread position:
               
118-420
               

               
Cow position:
               
chr11:48306496-48306191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
119-324
               

               
Cow position:
               
chr11:69015823-69016032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 171
               

               
Conread position:
               
119-336
               

               
Cow position:
               
chr11:52983525-52983745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 106
               

               
Conread position:
               
119-356
               

               
Cow position:
               
chr11:70250774-70251009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
174, 52
               

               
Conread position:
               
119-356
               

               
Cow position:
               
chr11:84228865-84228627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
119-370
               

               
Cow position:
               
chr11:83925895-83926147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
120-265
               

               
Cow position:
               
chr11:70824945-70825091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
120-379
               

               
Cow position:
               
chr11:71806294-71806040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
65, 100
               

               
Conread position:
               
121-276
               

               
Cow position:
               
chr11:65435704-65435864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 105
               

               
Conread position:
               
121-282
               

               
Cow position:
               
chr11:51626813-51626980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
121-334
               

               
Cow position:
               
chr11:45742232-45742441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
121-335
               

               
Cow position:
               
chr11:40794503-40794283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
121-356
               

               
Cow position:
               
chr11:6633562-6633801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
92, 109
               

               
Conread position:
               
121-356
               

               
Cow position:
               
chr11:86720561-86720327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
65, 47
               

               
Conread position:
               
121-379
               

               
Cow position:
               
chr11:62663370-62663115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
208, 68
               

               
Conread position:
               
122-264
               

               
Cow position:
               
chr11:81340646-81340507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
122-265
               

               
Cow position:
               
chr11:58112379-58112232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
122-323
               

               
Cow position:
               
chr11:61560774-61560576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 100
               

               
Conread position:
               
122-331
               

               
Cow position:
               
chr11:68112411-68112195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
122-418
               

               
Cow position:
               
chr11:67246644-67246932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
59, 98
               

               
Conread position:
               
123-297
               

               
Cow position:
               
chr11:85703558-85703732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
123-379
               

               
Cow position:
               
chr11:21852450-21852190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
63, 7
               

               
Conread position:
               
124-356
               

               
Cow position:
               
chr11:23407315-23407555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 167
               

               
Conread position:
               
124-379
               

               
Cow position:
               
chr11:49057256-49057509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
124-416
               

               
Cow position:
               
chr11:33825037-33824733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 167
               

               
Conread position:
               
125-356
               

               
Cow position:
               
chr11:7460763-7460524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
126-369
               

               
Cow position:
               
chr11:63999234-63998986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
62, 136
               

               
Conread position:
               
127-316
               

               
Cow position:
               
chr11:21422079-21421889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 111
               

               
Conread position:
               
129-319
               

               
Cow position:
               
chr11:53462801-53462994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
8, 103
               

               
Conread position:
               
129-327
               

               
Cow position:
               
chr11:48428964-48429170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
20, 164
               

               
Conread position:
               
129-367
               

               
Cow position:
               
chr11:65767056-65767299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
57, 161
               

               
Conread position:
               
129-416
               

               
Cow position:
               
chr11:16540721-16541016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
130-262
               

               
Cow position:
               
chr11:10837669-10837530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
130-334
               

               
Cow position:
               
chr11:16262166-16261958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
131-249
               

               
Cow position:
               
chr11:3797243-3797361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
131-331
               

               
Cow position:
               
chr11:40395298-40395504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
6, 101
               

               
Conread position:
               
131-349
               

               
Cow position:
               
chr11:42066721-42066948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
51, 128
               

               
Conread position:
               
131-349
               

               
Cow position:
               
chr11:69977838-69978054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 80
               

               
Conread position:
               
131-355
               

               
Cow position:
               
chr11:67615382-67615157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
132-351
               

               
Cow position:
               
chr11:48659793-48660020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 159
               

               
Conread position:
               
132-356
               

               
Cow position:
               
chr11:52690661-52690431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 159
               

               
Conread position:
               
134-325
               

               
Cow position:
               
chr11:261399-261210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
134-336
               

               
Cow position:
               
chr11:28395332-28395545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
8, 161
               

               
Conread position:
               
134-370
               

               
Cow position:
               
chr11:70978863-70978630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
55, 87
               

               
Conread position:
               
135-268
               

               
Cow position:
               
chr11:61178010-61178148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
135-336
               

               
Cow position:
               
chr11:62788993-62789200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 155
               

               
Conread position:
               
135-356
               

               
Cow position:
               
chr11:70206188-70206409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr11:46952815-46953053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
88, 150
               

               
Conread position:
               
135-377
               

               
Cow position:
               
chr11:69307365-69307625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 176
               

               
Conread position:
               
135-419
               

               
Cow position:
               
chr11:21398830-21399122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
77, 160
               

               
Conread position:
               
139-354
               

               
Cow position:
               
chr11:47772523-47772301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
139-355
               

               
Cow position:
               
chr11:64351924-64351703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 151
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr11:21497390-21497632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr11:1095005-1095172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 74
               

               
Conread position:
               
140-316
               

               
Cow position:
               
chr11:5211869-5211688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
46, 125
               

               
Conread position:
               
140-324
               

               
Cow position:
               
chr11:76652892-76653076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 73
               

               
Conread position:
               
140-336
               

               
Cow position:
               
chr11:59024484-59024291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
46, 58
               

               
Conread position:
               
140-355
               

               
Cow position:
               
chr11:62742763-62742556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
140-364
               

               
Cow position:
               
chr11:485761-485532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
140-370
               

               
Cow position:
               
chr11:64868145-64867915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
48, 58
               

               
Conread position:
               
140-370
               

               
Cow position:
               
chr11:67615059-67614816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 155
               

               
Conread position:
               
141-355
               

               
Cow position:
               
chr11:41293948-41293728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
141-361
               

               
Cow position:
               
chr11:49873017-49872792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 150
               

               
Conread position:
               
142-310
               

               
Cow position:
               
chr11:83000663-83000487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 173
               

               
Conread position:
               
142-329
               

               
Cow position:
               
chr11:71807699-71807505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
142-356
               

               
Cow position:
               
chr11:70756353-70756568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
44, 114
               

               
Conread position:
               
143-356
               

               
Cow position:
               
chr11:83033363-83033149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
144-328
               

               
Cow position:
               
chr11:19233071-19232891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
144-356
               

               
Cow position:
               
chr11:42160181-42159966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 142
               

               
Conread position:
               
145-278
               

               
Cow position:
               
chr11:31526593-31526455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
145-326
               

               
Cow position:
               
chr11:81168157-81167967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 152
               

               
Conread position:
               
145-351
               

               
Cow position:
               
chr11:50472190-50472402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
145-356
               

               
Cow position:
               
chr11:40608722-40608504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
35, 146
               

               
Conread position:
               
145-356
               

               
Cow position:
               
chr11:47837188-47837410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 125
               

               
Conread position:
               
145-379
               

               
Cow position:
               
chr11:27719448-27719216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
146-328
               

               
Cow position:
               
chr11:6194081-6194266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
146-334
               

               
Cow position:
               
chr11:13864222-13864037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
147-319
               

               
Cow position:
               
chr11:12368581-12368752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 5
               

               
Conread position:
               
147-327
               

               
Cow position:
               
chr11:372818-372645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
147-356
               

               
Cow position:
               
chr11:33345320-33345536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
39, 143
               

               
Conread position:
               
147-378
               

               
Cow position:
               
chr11:57873706-57873933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
41, 74
               

               
Conread position:
               
147-419
               

               
Cow position:
               
chr11:9368709-9368990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
178, 147
               

               
Conread position:
               
148-348
               

               
Cow position:
               
chr11:31506722-31506933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 156
               

               
Conread position:
               
148-351
               

               
Cow position:
               
chr11:53510620-53510417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
25, 139
               

               
Conread position:
               
148-356
               

               
Cow position:
               
chr11:4653094-4652882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
6, 32
               

               
Conread position:
               
148-368
               

               
Cow position:
               
chr11:14466610-14466384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
149-325
               

               
Cow position:
               
chr11:29308461-29308638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
75, 9
               

               
Conread position:
               
149-332
               

               
Cow position:
               
chr11:56734508-56734695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
149-356
               

               
Cow position:
               
chr11:63920170-63919963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
151-356
               

               
Cow position:
               
chr11:375335-375550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
152-271
               

               
Cow position:
               
chr11:36066330-36066216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
154-331
               

               
Cow position:
               
chr11:30728288-30728465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
154-336
               

               
Cow position:
               
chr11:11994822-11994643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
30, 134
               

               
Conread position:
               
155-351
               

               
Cow position:
               
chr11:64406116-64406314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
58, 130
               

               
Conread position:
               
155-379
               

               
Cow position:
               
chr11:8584205-8584441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 141
               

               
Conread position:
               
157-336
               

               
Cow position:
               
chr11:31874979-31875162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
159-336
               

               
Cow position:
               
chr11:18587719-18587526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 141
               

               
Conread position:
               
160-368
               

               
Cow position:
               
chr11:31227858-31228065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
161-281
               

               
Cow position:
               
chr11:49210944-49210825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
161-356
               

               
Cow position:
               
chr11:39060704-39060512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
163-331
               

               
Cow position:
               
chr11:6642709-6642877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
163-336
               

               
Cow position:
               
chr11:75965757-75965582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
163-370
               

               
Cow position:
               
chr11:32691065-32690868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
163-373
               

               
Cow position:
               
chr11:30210805-30211014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
43, 88
               

               
Conread position:
               
163-416
               

               
Cow position:
               
chr11:249586-249324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 122
               

               
Conread position:
               
164-327
               

               
Cow position:
               
chr11:31024908-31024747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
164-336
               

               
Cow position:
               
chr11:46998884-46999048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 55
               

               
Conread position:
               
164-350
               

               
Cow position:
               
chr11:31885617-31885807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
164-351
               

               
Cow position:
               
chr11:30493898-30494079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
179, 49
               

               
Conread position:
               
164-361
               

               
Cow position:
               
chr11:6194307-6194492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
166-332
               

               
Cow position:
               
chr11:7385339-7385505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 61
               

               
Conread position:
               
166-359
               

               
Cow position:
               
chr11:83032583-83032772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
163, 41
               

               
Conread position:
               
168-310
               

               
Cow position:
               
chr11:1779427-1779286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
5, 106
               

               
Conread position:
               
171-328
               

               
Cow position:
               
chr11:62482544-62482701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
171-336
               

               
Cow position:
               
chr11:8669916-8670081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
171-336
               

               
Cow position:
               
chr11:21507912-21508074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
131, 11
               

               
Conread position:
               
171-376
               

               
Cow position:
               
chr11:27565242-27565443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
159, 48
               

               
Conread position:
               
171-379
               

               
Cow position:
               
chr11:19946344-19946553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
159, 8
               

               
Conread position:
               
172-314
               

               
Cow position:
               
chr11:63396726-63396864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
172-351
               

               
Cow position:
               
chr11:69652878-69652696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
17, 117
               

               
Conread position:
               
172-356
               

               
Cow position:
               
chr11:30370017-30370195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
156, 10
               

               
Conread position:
               
177-356
               

               
Cow position:
               
chr11:22747417-22747240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
178-356
               

               
Cow position:
               
chr11:47724816-47724987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
179-334
               

               
Cow position:
               
chr11:11045119-11044965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
149, 100
               

               
Conread position:
               
179-335
               

               
Cow position:
               
chr11:19586369-19586528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
179-337
               

               
Cow position:
               
chr11:18910964-18910812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
150, 96
               

               
Conread position:
               
179-348
               

               
Cow position:
               
chr11:4199187-4199354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
152, 40
               

               
Conread position:
               
179-349
               

               
Cow position:
               
chr11:7013829-7013662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
179-350
               

               
Cow position:
               
chr11:35803048-35803221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
135, 105
               

               
Conread position:
               
179-351
               

               
Cow position:
               
chr11:41603775-41603601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
179-355
               

               
Cow position:
               
chr11:8437775-8437604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
150, 52
               

               
Conread position:
               
179-356
               

               
Cow position:
               
chr11:48085830-48086011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 106
               

               
Conread position:
               
179-358
               

               
Cow position:
               
chr11:62778361-62778534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
179-368
               

               
Cow position:
               
chr11:66518404-66518600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
142, 106
               

               
Conread position:
               
179-370
               

               
Cow position:
               
chr11:33409346-33409158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
148, 28
               

               
Conread position:
               
179-373
               

               
Cow position:
               
chr11:32398551-32398742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
164, 105
               

               
Conread position:
               
179-379
               

               
Cow position:
               
chr11:35536502-35536710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
151, 28
               

               
Conread position:
               
179-379
               

               
Cow position:
               
chr11:84890806-84890602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
180-325
               

               
Cow position:
               
chr11:54218632-54218772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
180-355
               

               
Cow position:
               
chr11:62813036-62812860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
180-368
               

               
Cow position:
               
chr11:67312686-67312883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
180-370
               

               
Cow position:
               
chr11:4430212-4430032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
149, 16
               

               
Conread position:
               
180-378
               

               
Cow position:
               
chr11:63687700-63687510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
149, 36
               

               
Conread position:
               
181-355
               

               
Cow position:
               
chr11:63866738-63866569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
150, 31
               

               
Conread position:
               
181-356
               

               
Cow position:
               
chr11:46922982-46922794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
181-368
               

               
Cow position:
               
chr11:17721888-17721700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
182-324
               

               
Cow position:
               
chr11:35709199-35709059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
182-336
               

               
Cow position:
               
chr11:41313739-41313587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
146, 37
               

               
Conread position:
               
182-348
               

               
Cow position:
               
chr11:55203542-55203378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
146, 41
               

               
Conread position:
               
182-349
               

               
Cow position:
               
chr11:53279797-53279631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 103
               

               
Conread position:
               
182-355
               

               
Cow position:
               
chr11:17676453-17676283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
146, 52
               

               
Conread position:
               
182-356
               

               
Cow position:
               
chr11:1067525-1067349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
40, 104
               

               
Conread position:
               
182-416
               

               
Cow position:
               
chr11:69392479-69392710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
148, 31
               

               
Conread position:
               
183-350
               

               
Cow position:
               
chr11:82289493-82289662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
183-351
               

               
Cow position:
               
chr11:36914802-36914642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
146, 24
               

               
Conread position:
               
183-362
               

               
Cow position:
               
chr11:82740426-82740606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
146, 101
               

               
Conread position:
               
184-351
               

               
Cow position:
               
chr11:35926987-35926824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
184-356
               

               
Cow position:
               
chr11:79019140-79018968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
145, 9
               

               
Conread position:
               
184-359
               

               
Cow position:
               
chr11:28168505-28168329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
185-351
               

               
Cow position:
               
chr11:31410963-31410792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
186-336
               

               
Cow position:
               
chr11:70825872-70826018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
144, 35
               

               
Conread position:
               
186-416
               

               
Cow position:
               
chr11:18785950-18785715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
38, 94
               

               
Conread position:
               
187-370
               

               
Cow position:
               
chr11:30888361-30888173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 15
               

               
Conread position:
               
188-336
               

               
Cow position:
               
chr11:36920656-36920505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
89, 101
               

               
Conread position:
               
188-379
               

               
Cow position:
               
chr11:4637250-4637049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
188-382
               

               
Cow position:
               
chr11:30867104-30867300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
190-325
               

               
Cow position:
               
chr11:7299058-7299192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
190-379
               

               
Cow position:
               
chr11:64104922-64105119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
190-419
               

               
Cow position:
               
chr11:51196153-51195913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
192-327
               

               
Cow position:
               
chr11:20194502-20194366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
192-356
               

               
Cow position:
               
chr11:7559925-7560090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
136, 103
               

               
Conread position:
               
193-351
               

               
Cow position:
               
chr11:30483845-30484005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
196-355
               

               
Cow position:
               
chr11:10363457-10363297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
197-336
               

               
Cow position:
               
chr11:71482311-71482449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
198-362
               

               
Cow position:
               
chr11:29699768-29699603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
133, 69
               

               
Conread position:
               
199-319
               

               
Cow position:
               
chr11:17515371-17515492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
206-348
               

               
Cow position:
               
chr11:82731060-82730914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
207-369
               

               
Cow position:
               
chr11:30964287-30964447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 39
               

               
Conread position:
               
208-402
               

               
Cow position:
               
chr11:39855072-39854878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
209-336
               

               
Cow position:
               
chr11:62609547-62609674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
120, 75
               

               
Conread position:
               
210-336
               

               
Cow position:
               
chr11:28884883-28884756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
211-336
               

               
Cow position:
               
chr11:16320231-16320353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
116, 48
               

               
Conread position:
               
213-368
               

               
Cow position:
               
chr11:20205905-20205749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
116, 71
               

               
Conread position:
               
214-326
               

               
Cow position:
               
chr11:62230128-62230239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
214-352
               

               
Cow position:
               
chr11:34106722-34106583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
114, 71
               

               
Conread position:
               
214-379
               

               
Cow position:
               
chr11:18447544-18447375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 70
               

               
Conread position:
               
215-336
               

               
Cow position:
               
chr11:81762811-81762931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
115, 49
               

               
Conread position:
               
216-337
               

               
Cow position:
               
chr11:34692802-34692924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
6, 69
               

               
Conread position:
               
216-364
               

               
Cow position:
               
chr11:38211595-38211744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 68
               

               
Conread position:
               
216-377
               

               
Cow position:
               
chr11:19606527-19606690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
113, 68
               

               
Conread position:
               
217-367
               

               
Cow position:
               
chr11:62754368-62754216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 72
               

               
Conread position:
               
218-356
               

               
Cow position:
               
chr11:35109586-35109448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
82, 55
               

               
Conread position:
               
219-377
               

               
Cow position:
               
chr11:71110844-71111005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
114, 65
               

               
Conread position:
               
219-379
               

               
Cow position:
               
chr11:84977406-84977239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
108, 65
               

               
Conread position:
               
219-387
               

               
Cow position:
               
chr11:21910674-21910503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 65
               

               
Conread position:
               
220-332
               

               
Cow position:
               
chr11:71935001-71934889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
108, 65
               

               
Conread position:
               
220-370
               

               
Cow position:
               
chr11:30172263-30172408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
109, 60
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr11:16843030-16842882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
220-416
               

               
Cow position:
               
chr11:35669998-35669785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
109, 64
               

               
Conread position:
               
221-327
               

               
Cow position:
               
chr11:65624838-65624734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
221-351
               

               
Cow position:
               
chr11:29983762-29983632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
107, 64
               

               
Conread position:
               
221-367
               

               
Cow position:
               
chr11:39249927-39250074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
122, 64
               

               
Conread position:
               
221-379
               

               
Cow position:
               
chr11:18914980-18915136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
221-379
               

               
Cow position:
               
chr11:27462143-27461985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
221-379
               

               
Cow position:
               
chr11:77013739-77013896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
107, 58
               

               
Conread position:
               
222-355
               

               
Cow position:
               
chr11:897629-897763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
107, 62
               

               
Conread position:
               
222-356
               

               
Cow position:
               
chr11:56290467-56290602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
108, 62
               

               
Conread position:
               
222-364
               

               
Cow position:
               
chr11:29786544-29786400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
5, 64
               

               
Conread position:
               
222-368
               

               
Cow position:
               
chr11:48063845-48063698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
108, 66
               

               
Conread position:
               
222-416
               

               
Cow position:
               
chr11:61130709-61130517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
223-336
               

               
Cow position:
               
chr11:78820111-78820220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
223-356
               

               
Cow position:
               
chr11:43914250-43914382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
105, 12
               

               
Conread position:
               
223-379
               

               
Cow position:
               
chr11:80616200-80616350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
105, 61
               

               
Conread position:
               
227-349
               

               
Cow position:
               
chr11:17946937-17946815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
227-368
               

               
Cow position:
               
chr11:46427447-46427303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
228-327
               

               
Cow position:
               
chr11:18608276-18608178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
228-351
               

               
Cow position:
               
chr11:68173493-68173617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 57
               

               
Conread position:
               
229-356
               

               
Cow position:
               
chr11:53717844-53717716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 55
               

               
Conread position:
               
230-336
               

               
Cow position:
               
chr11:58938781-58938675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
100, 55
               

               
Conread position:
               
230-356
               

               
Cow position:
               
chr11:58173589-58173715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 54
               

               
Conread position:
               
238-357
               

               
Cow position:
               
chr11:2900749-2900629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
242-379
               

               
Cow position:
               
chr11:84764012-84764148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
246-367
               

               
Cow position:
               
chr11:15683000-15682878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
251-368
               

               
Cow position:
               
chr11:33993149-33993271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
265-419
               

               
Cow position:
               
chr11:46499009-46499175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
266-379
               

               
Cow position:
               
chr11:58185882-58185998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 19
               
Show alignments to all cow chromosomes.