• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-rmgp012_h16.5
        

               
Conread position:
               
1-249
               

               
Cow position:
               
chr6:602883-603136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
65, 85
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr6:57274262-57274517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
16-336
               

               
Cow position:
               
chr6:67430083-67429751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
17-351
               

               
Cow position:
               
chr6:63094126-63093773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 87
               

               
Conread position:
               
22-379
               

               
Cow position:
               
chr6:48573071-48572716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 43
               

               
Conread position:
               
25-368
               

               
Cow position:
               
chr6:78097-77762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
25-416
               

               
Cow position:
               
chr6:7824578-7824965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
25-419
               

               
Cow position:
               
chr6:47640623-47640229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 197
               

               
Conread position:
               
27-282
               

               
Cow position:
               
chr6:3118379-3118120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
140, 18
               

               
Conread position:
               
27-337
               

               
Cow position:
               
chr6:65871715-65872015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
28-316
               

               
Cow position:
               
chr6:60850573-60850274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 198
               

               
Conread position:
               
31-331
               

               
Cow position:
               
chr6:52431210-52430900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
33-262
               

               
Cow position:
               
chr6:47625143-47624908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 11
               

               
Conread position:
               
34-265
               

               
Cow position:
               
chr6:54492635-54492400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 180
               

               
Conread position:
               
34-277
               

               
Cow position:
               
chr6:28148669-28148903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
151, 13
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chr6:59108768-59109043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
34-334
               

               
Cow position:
               
chr6:41733453-41733757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
35-205
               

               
Cow position:
               
chr6:39994635-39994463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
35-286
               

               
Cow position:
               
chr6:3374750-3374488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 212
               

               
Conread position:
               
35-301
               

               
Cow position:
               
chr6:58732488-58732220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
35-307
               

               
Cow position:
               
chr6:32677254-32676985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
35-316
               

               
Cow position:
               
chr6:53178463-53178735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-323
               

               
Cow position:
               
chr6:7103410-7103128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-323
               

               
Cow position:
               
chr6:22503097-22502798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
35-327
               

               
Cow position:
               
chr6:2607439-2607723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-334
               

               
Cow position:
               
chr6:60442244-60442532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
35-336
               

               
Cow position:
               
chr6:33918025-33917712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-336
               

               
Cow position:
               
chr6:55475072-55475382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
35-351
               

               
Cow position:
               
chr6:35613588-35613274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
35-351
               

               
Cow position:
               
chr6:46570944-46571248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
294, 10
               

               
Conread position:
               
35-351
               

               
Cow position:
               
chr6:65870850-65871179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
35-355
               

               
Cow position:
               
chr6:10106170-10105832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
35-368
               

               
Cow position:
               
chr6:24031201-24031536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
35-370
               

               
Cow position:
               
chr6:65903791-65903463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
107, 23
               

               
Conread position:
               
35-376
               

               
Cow position:
               
chr6:58073871-58074219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 23
               

               
Conread position:
               
35-377
               

               
Cow position:
               
chr6:5095724-5095373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
35-382
               

               
Cow position:
               
chr6:47026307-47026644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
35-419
               

               
Cow position:
               
chr6:56376524-56376131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
122, 14
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr6:32987170-32986992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
47, 76
               

               
Conread position:
               
38-416
               

               
Cow position:
               
chr6:899461-899084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 20
               

               
Conread position:
               
39-349
               

               
Cow position:
               
chr6:14914412-14914096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
40-266
               

               
Cow position:
               
chr6:633529-633300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
45, 9
               

               
Conread position:
               
42-278
               

               
Cow position:
               
chr6:46634085-46634322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
44-333
               

               
Cow position:
               
chr6:67323149-67323433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
8, 55
               

               
Conread position:
               
45-184
               

               
Cow position:
               
chr6:1783938-1783806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 39
               

               
Conread position:
               
45-261
               

               
Cow position:
               
chr6:52025819-52025598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
45-280
               

               
Cow position:
               
chr6:62851445-62851205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 180
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr6:56350006-56350248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
45-313
               

               
Cow position:
               
chr6:23117564-23117292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
40, 163
               

               
Conread position:
               
45-316
               

               
Cow position:
               
chr6:1817031-1816759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 92
               

               
Conread position:
               
45-316
               

               
Cow position:
               
chr6:3621948-3622223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 198
               

               
Conread position:
               
45-316
               

               
Cow position:
               
chr6:28276495-28276770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
39, 245
               

               
Conread position:
               
45-316
               

               
Cow position:
               
chr6:51718540-51718815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
39, 163
               

               
Conread position:
               
45-316
               

               
Cow position:
               
chr6:59728556-59728831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
39, 163
               

               
Conread position:
               
45-336
               

               
Cow position:
               
chr6:47383836-47384133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 190
               

               
Conread position:
               
45-337
               

               
Cow position:
               
chr6:240100-239805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
45-379
               

               
Cow position:
               
chr6:23532498-23532829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 74
               

               
Conread position:
               
45-395
               

               
Cow position:
               
chr6:23695832-23696187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 40
               

               
Conread position:
               
46-356
               

               
Cow position:
               
chr6:64431776-64432086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 9
               

               
Conread position:
               
47-314
               

               
Cow position:
               
chr6:67968777-67968507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 242
               

               
Conread position:
               
47-323
               

               
Cow position:
               
chr6:48988272-48988543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
47-325
               

               
Cow position:
               
chr6:17334220-17333938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
47-329
               

               
Cow position:
               
chr6:18080675-18080397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
39, 139
               

               
Conread position:
               
47-334
               

               
Cow position:
               
chr6:12543096-12542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
47-336
               

               
Cow position:
               
chr6:19012907-19013190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
47-354
               

               
Cow position:
               
chr6:48112041-48112342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 38
               

               
Conread position:
               
48-169
               

               
Cow position:
               
chr6:1002395-1002277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
48-257
               

               
Cow position:
               
chr6:48344166-48344381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
36, 194
               

               
Conread position:
               
48-272
               

               
Cow position:
               
chr6:6460377-6460605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 164
               

               
Conread position:
               
48-289
               

               
Cow position:
               
chr6:50445925-50445687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
48-316
               

               
Cow position:
               
chr6:54430657-54430936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
36, 249
               

               
Conread position:
               
48-316
               

               
Cow position:
               
chr6:55610401-55610130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
48-316
               

               
Cow position:
               
chr6:60859468-60859195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 141
               

               
Conread position:
               
48-323
               

               
Cow position:
               
chr6:35471685-35471397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
37, 252
               

               
Conread position:
               
48-334
               

               
Cow position:
               
chr6:46865755-46865467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
48-335
               

               
Cow position:
               
chr6:21534897-21535165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
48-336
               

               
Cow position:
               
chr6:611399-611674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
48-336
               

               
Cow position:
               
chr6:38441020-38441299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 37
               

               
Conread position:
               
48-338
               

               
Cow position:
               
chr6:38614662-38614941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 36
               

               
Conread position:
               
48-351
               

               
Cow position:
               
chr6:53651879-53652183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
48-355
               

               
Cow position:
               
chr6:28482853-28483163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
37, 154
               

               
Conread position:
               
48-355
               

               
Cow position:
               
chr6:46465666-46465968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
137, 36
               

               
Conread position:
               
48-356
               

               
Cow position:
               
chr6:66433786-66434099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
48-368
               

               
Cow position:
               
chr6:47574743-47575066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
48-376
               

               
Cow position:
               
chr6:32121749-32122074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 36
               

               
Conread position:
               
48-379
               

               
Cow position:
               
chr6:7190281-7189947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
48-379
               

               
Cow position:
               
chr6:9008773-9008444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 37
               

               
Conread position:
               
48-379
               

               
Cow position:
               
chr6:21231374-21231694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 37
               

               
Conread position:
               
48-379
               

               
Cow position:
               
chr6:26450155-26450482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
48-382
               

               
Cow position:
               
chr6:8788199-8787863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
48-382
               

               
Cow position:
               
chr6:40774510-40774156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
115, 37
               

               
Conread position:
               
48-403
               

               
Cow position:
               
chr6:15305420-15305767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 38
               

               
Conread position:
               
48-419
               

               
Cow position:
               
chr6:56842997-56843359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
134, 37
               

               
Conread position:
               
49-316
               

               
Cow position:
               
chr6:48567503-48567246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
49-325
               

               
Cow position:
               
chr6:61113590-61113882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
49-327
               

               
Cow position:
               
chr6:30474162-30474445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
49-368
               

               
Cow position:
               
chr6:51463776-51463473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 6
               

               
Conread position:
               
50-323
               

               
Cow position:
               
chr6:54036294-54036030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
51-328
               

               
Cow position:
               
chr6:31535730-31535451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 236
               

               
Conread position:
               
51-371
               

               
Cow position:
               
chr6:528436-528122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
52-225
               

               
Cow position:
               
chr6:46245481-46245306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
52-261
               

               
Cow position:
               
chr6:58173025-58173237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
128, 71
               

               
Conread position:
               
52-265
               

               
Cow position:
               
chr6:53710958-53711171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
52-268
               

               
Cow position:
               
chr6:61137213-61137434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
52-277
               

               
Cow position:
               
chr6:5445465-5445691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
52-282
               

               
Cow position:
               
chr6:44372101-44371872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr6:21456848-21456587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
52-316
               

               
Cow position:
               
chr6:561460-561733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
32, 186
               

               
Conread position:
               
52-327
               

               
Cow position:
               
chr6:2582716-2582976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
52-329
               

               
Cow position:
               
chr6:63047418-63047711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
52-330
               

               
Cow position:
               
chr6:25407550-25407270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
52-334
               

               
Cow position:
               
chr6:63272772-63272487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
33, 172
               

               
Conread position:
               
52-335
               

               
Cow position:
               
chr6:44377107-44377396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chr6:10176461-10176175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chr6:17997473-17997193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chr6:18447667-18447391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
33, 43
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chr6:53519781-53519497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
52-349
               

               
Cow position:
               
chr6:6201283-6201564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
85, 29
               

               
Conread position:
               
52-349
               

               
Cow position:
               
chr6:35181411-35181117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
52-349
               

               
Cow position:
               
chr6:46557898-46558197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
52-351
               

               
Cow position:
               
chr6:36196056-36196349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr6:2547082-2547402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 248
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr6:8637117-8637428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
131, 34
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr6:19264658-19264352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr6:49398774-49398473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 32
               

               
Conread position:
               
52-355
               

               
Cow position:
               
chr6:54132660-54132959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 27
               

               
Conread position:
               
52-356
               

               
Cow position:
               
chr6:15243093-15243403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 159
               

               
Conread position:
               
52-356
               

               
Cow position:
               
chr6:15938011-15937707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
52-358
               

               
Cow position:
               
chr6:8209747-8209456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
277, 33
               

               
Conread position:
               
52-358
               

               
Cow position:
               
chr6:17414609-17414295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
52-358
               

               
Cow position:
               
chr6:38853816-38853509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
52-358
               

               
Cow position:
               
chr6:47519888-47520203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 240
               

               
Conread position:
               
52-358
               

               
Cow position:
               
chr6:60819357-60819660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
52-360
               

               
Cow position:
               
chr6:51581415-51581104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 238
               

               
Conread position:
               
52-361
               

               
Cow position:
               
chr6:49002883-49002588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
52-364
               

               
Cow position:
               
chr6:52478585-52478255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 249
               

               
Conread position:
               
52-368
               

               
Cow position:
               
chr6:5114205-5113890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
52-368
               

               
Cow position:
               
chr6:67214583-67214909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 25
               

               
Conread position:
               
52-372
               

               
Cow position:
               
chr6:9452931-9452606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 156
               

               
Conread position:
               
52-377
               

               
Cow position:
               
chr6:42565527-42565855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
52-379
               

               
Cow position:
               
chr6:45690751-45690433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
52-395
               

               
Cow position:
               
chr6:39358499-39358155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
112, 33
               

               
Conread position:
               
52-402
               

               
Cow position:
               
chr6:20098122-20097765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 32
               

               
Conread position:
               
52-416
               

               
Cow position:
               
chr6:51893663-51893288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 167
               

               
Conread position:
               
55-267
               

               
Cow position:
               
chr6:53731366-53731582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
55-316
               

               
Cow position:
               
chr6:20329866-20330113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 108
               

               
Conread position:
               
55-333
               

               
Cow position:
               
chr6:34475709-34475437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
55-370
               

               
Cow position:
               
chr6:38207651-38207324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 149
               

               
Conread position:
               
56-419
               

               
Cow position:
               
chr6:35415675-35415315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
57-325
               

               
Cow position:
               
chr6:19329907-19329652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
57-336
               

               
Cow position:
               
chr6:53933001-53932720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
57-375
               

               
Cow position:
               
chr6:6264492-6264830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
58-176
               

               
Cow position:
               
chr6:59301977-59301857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-179
               

               
Cow position:
               
chr6:18904494-18904375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
58-184
               

               
Cow position:
               
chr6:389018-389141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
58-184
               

               
Cow position:
               
chr6:2012867-2012990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-184
               

               
Cow position:
               
chr6:10605533-10605659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
58-184
               

               
Cow position:
               
chr6:20605781-20605907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
58-222
               

               
Cow position:
               
chr6:15923151-15922983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
58-247
               

               
Cow position:
               
chr6:54885065-54884865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
58-249
               

               
Cow position:
               
chr6:30826188-30825991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
58-258
               

               
Cow position:
               
chr6:3978819-3978613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
58-262
               

               
Cow position:
               
chr6:16737868-16738072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
58-262
               

               
Cow position:
               
chr6:49604530-49604729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr6:5958175-5957972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr6:6614281-6614493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 157
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr6:14839182-14838969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 168
               

               
Conread position:
               
58-265
               

               
Cow position:
               
chr6:45160444-45160242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
58-269
               

               
Cow position:
               
chr6:32210779-32210579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
58-270
               

               
Cow position:
               
chr6:16411043-16411252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
58-270
               

               
Cow position:
               
chr6:40834625-40834407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
58-274
               

               
Cow position:
               
chr6:66303999-66303775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
58-276
               

               
Cow position:
               
chr6:60239544-60239328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
84, 152
               

               
Conread position:
               
58-281
               

               
Cow position:
               
chr6:12623316-12623530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
58-281
               

               
Cow position:
               
chr6:49410841-49410625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
124, 21
               

               
Conread position:
               
58-282
               

               
Cow position:
               
chr6:21542168-21542396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
58-282
               

               
Cow position:
               
chr6:40760982-40761198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
58-283
               

               
Cow position:
               
chr6:44984174-44984407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 41
               

               
Conread position:
               
58-291
               

               
Cow position:
               
chr6:14850866-14850633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
58-300
               

               
Cow position:
               
chr6:607110-607353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 137
               

               
Conread position:
               
58-302
               

               
Cow position:
               
chr6:8804680-8804439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
58-303
               

               
Cow position:
               
chr6:24961993-24962238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
58-309
               

               
Cow position:
               
chr6:24934782-24934527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 232
               

               
Conread position:
               
58-310
               

               
Cow position:
               
chr6:48169793-48170038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
58-316
               

               
Cow position:
               
chr6:42518823-42519094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
58-319
               

               
Cow position:
               
chr6:51387610-51387858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
58-322
               

               
Cow position:
               
chr6:61515350-61515074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 36
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr6:1886815-1886554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr6:50090489-50090755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 228
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr6:60783718-60783983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
26, 34
               

               
Conread position:
               
58-324
               

               
Cow position:
               
chr6:20157173-20157447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
27, 236
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr6:10332248-10331986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr6:14201546-14201804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr6:37467691-37467425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr6:48281843-48282107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr6:50746828-50747112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
27, 246
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr6:52412702-52412974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
27, 157
               

               
Conread position:
               
58-326
               

               
Cow position:
               
chr6:323461-323189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 117
               

               
Conread position:
               
58-327
               

               
Cow position:
               
chr6:30973889-30974159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 97
               

               
Conread position:
               
58-327
               

               
Cow position:
               
chr6:63299178-63298914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
58-332
               

               
Cow position:
               
chr6:54647674-54647381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
58-334
               

               
Cow position:
               
chr6:14949633-14949356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
27, 44
               

               
Conread position:
               
58-334
               

               
Cow position:
               
chr6:26910021-26909748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
58-334
               

               
Cow position:
               
chr6:50984072-50984347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
58-334
               

               
Cow position:
               
chr6:52562326-52562055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 124
               

               
Conread position:
               
58-335
               

               
Cow position:
               
chr6:6343274-6343556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
58-335
               

               
Cow position:
               
chr6:19446108-19446376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 39
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:457034-457301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:15447360-15447071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 238
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:16706855-16707139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:24781716-24781433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 175
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:32125915-32126182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:37783266-37783527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:44566260-44566551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
27, 240
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:47339500-47339229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 27
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:50822082-50822357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:60057808-60057528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:61608355-61608639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 154
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr6:63197323-63197036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
58-337
               

               
Cow position:
               
chr6:120087-120373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 83
               

               
Conread position:
               
58-337
               

               
Cow position:
               
chr6:12337832-12338127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
58-337
               

               
Cow position:
               
chr6:21869797-21869521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
58-337
               

               
Cow position:
               
chr6:55763702-55763981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
58-343
               

               
Cow position:
               
chr6:10695715-10695994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 165
               

               
Conread position:
               
58-347
               

               
Cow position:
               
chr6:37603371-37603640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
203, 23
               

               
Conread position:
               
58-347
               

               
Cow position:
               
chr6:51674766-51675047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
58-348
               

               
Cow position:
               
chr6:35993425-35993724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 175
               

               
Conread position:
               
58-348
               

               
Cow position:
               
chr6:39093592-39093890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
58-349
               

               
Cow position:
               
chr6:3952370-3952658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
58-349
               

               
Cow position:
               
chr6:51835248-51835539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
58-350
               

               
Cow position:
               
chr6:6098434-6098124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr6:21110818-21111095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr6:28148099-28148398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
83, 18
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr6:31525896-31526189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr6:31847372-31847098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr6:38641346-38641635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr6:47305187-47305482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr6:47355672-47355965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chr6:61631765-61631466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 164
               

               
Conread position:
               
58-354
               

               
Cow position:
               
chr6:16423547-16423847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
58-355
               

               
Cow position:
               
chr6:36202676-36202966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 21
               

               
Conread position:
               
58-355
               

               
Cow position:
               
chr6:41375600-41375914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
28, 248
               

               
Conread position:
               
58-355
               

               
Cow position:
               
chr6:54991154-54990854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr6:7128552-7128256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr6:11169551-11169850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr6:11246612-11246914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 23
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr6:13040301-13040587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 162
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr6:19695654-19695954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr6:26728679-26728385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr6:57546368-57546081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr6:60739863-60740162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
58-356
               

               
Cow position:
               
chr6:65264687-65264398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
80, 21
               

               
Conread position:
               
58-357
               

               
Cow position:
               
chr6:59069780-59069471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 234
               

               
Conread position:
               
58-358
               

               
Cow position:
               
chr6:46860320-46860018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 152
               

               
Conread position:
               
58-360
               

               
Cow position:
               
chr6:13687963-13687663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
128, 28
               

               
Conread position:
               
58-364
               

               
Cow position:
               
chr6:17090443-17090754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 187
               

               
Conread position:
               
58-364
               

               
Cow position:
               
chr6:37199691-37199370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 258
               

               
Conread position:
               
58-367
               

               
Cow position:
               
chr6:14958501-14958181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
58-367
               

               
Cow position:
               
chr6:27888196-27888509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
58-367
               

               
Cow position:
               
chr6:58590122-58590431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr6:5609592-5609287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr6:36470715-36470402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr6:44194697-44194390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 144
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr6:67950807-67951111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr6:68049283-68049577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
58-371
               

               
Cow position:
               
chr6:1499486-1499804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
58-377
               

               
Cow position:
               
chr6:445159-445492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 249
               

               
Conread position:
               
58-377
               

               
Cow position:
               
chr6:24468549-24468227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 156
               

               
Conread position:
               
58-378
               

               
Cow position:
               
chr6:4692136-4691804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 236
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr6:8965937-8966270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 87
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr6:10612714-10613012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr6:15300969-15300658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr6:16700107-16700436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr6:40713654-40713327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr6:53024946-53024629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr6:53460724-53460390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
58-395
               

               
Cow position:
               
chr6:44078369-44078703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
58-416
               

               
Cow position:
               
chr6:29210349-29210714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
58-417
               

               
Cow position:
               
chr6:38218520-38218879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
58-417
               

               
Cow position:
               
chr6:57164275-57164627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
58-419
               

               
Cow position:
               
chr6:4864692-4864334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 24
               

               
Conread position:
               
58-419
               

               
Cow position:
               
chr6:12500708-12501069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
58-419
               

               
Cow position:
               
chr6:28318257-28318596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
58-419
               

               
Cow position:
               
chr6:36652267-36652639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
58-419
               

               
Cow position:
               
chr6:37634637-37635009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
59-230
               

               
Cow position:
               
chr6:67574256-67574426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
59-249
               

               
Cow position:
               
chr6:58076073-58076270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
59-260
               

               
Cow position:
               
chr6:60456680-60456880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
59-262
               

               
Cow position:
               
chr6:62324840-62325045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
59-265
               

               
Cow position:
               
chr6:19563924-19563721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
59-267
               

               
Cow position:
               
chr6:12629873-12630079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
59-270
               

               
Cow position:
               
chr6:54293960-54294163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
59-277
               

               
Cow position:
               
chr6:642728-642502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
26, 164
               

               
Conread position:
               
59-310
               

               
Cow position:
               
chr6:59597506-59597748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
59-325
               

               
Cow position:
               
chr6:48187732-48187464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
59-325
               

               
Cow position:
               
chr6:60473984-60474245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
59-331
               

               
Cow position:
               
chr6:54701389-54701663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 43
               

               
Conread position:
               
59-336
               

               
Cow position:
               
chr6:23248114-23247839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 223
               

               
Conread position:
               
59-336
               

               
Cow position:
               
chr6:54369051-54368777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
59-351
               

               
Cow position:
               
chr6:9751191-9750914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
59-355
               

               
Cow position:
               
chr6:3929168-3929456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
59-356
               

               
Cow position:
               
chr6:6400797-6401098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
59-356
               

               
Cow position:
               
chr6:9736791-9736513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
59-356
               

               
Cow position:
               
chr6:29484939-29485231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
59-356
               

               
Cow position:
               
chr6:32867357-32867071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
59-362
               

               
Cow position:
               
chr6:60350450-60350138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 233
               

               
Conread position:
               
59-368
               

               
Cow position:
               
chr6:54867359-54867677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
59-368
               

               
Cow position:
               
chr6:58370593-58370910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
59-368
               

               
Cow position:
               
chr6:60931049-60930740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
59-379
               

               
Cow position:
               
chr6:1703663-1703979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 127
               

               
Conread position:
               
59-386
               

               
Cow position:
               
chr6:7989567-7989239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 140
               

               
Conread position:
               
61-323
               

               
Cow position:
               
chr6:55688886-55689139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 113
               

               
Conread position:
               
62-174
               

               
Cow position:
               
chr6:10649174-10649063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
62-184
               

               
Cow position:
               
chr6:46666954-46667083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
62-184
               

               
Cow position:
               
chr6:69500176-69500295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
62-204
               

               
Cow position:
               
chr6:53139077-53138924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
62-213
               

               
Cow position:
               
chr6:61575455-61575615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
62-221
               

               
Cow position:
               
chr6:33276889-33277057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
62-247
               

               
Cow position:
               
chr6:58364160-58363970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
62-258
               

               
Cow position:
               
chr6:20230974-20230777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
62-258
               

               
Cow position:
               
chr6:21311906-21311709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 131
               

               
Conread position:
               
62-260
               

               
Cow position:
               
chr6:53345648-53345841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
84, 23
               

               
Conread position:
               
62-265
               

               
Cow position:
               
chr6:47540378-47540587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
22, 104
               

               
Conread position:
               
62-276
               

               
Cow position:
               
chr6:36928503-36928728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
62-276
               

               
Cow position:
               
chr6:47989037-47989239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
62-276
               

               
Cow position:
               
chr6:49685437-49685649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
62-276
               

               
Cow position:
               
chr6:49694227-49694446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
62-277
               

               
Cow position:
               
chr6:9839014-9839240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
62-283
               

               
Cow position:
               
chr6:48425469-48425250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
62-284
               

               
Cow position:
               
chr6:44098936-44099162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
62-289
               

               
Cow position:
               
chr6:10254091-10254322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
62-306
               

               
Cow position:
               
chr6:1944578-1944809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
154, 23
               

               
Conread position:
               
62-307
               

               
Cow position:
               
chr6:62925141-62924899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
118, 23
               

               
Conread position:
               
62-325
               

               
Cow position:
               
chr6:1770347-1770083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
62-326
               

               
Cow position:
               
chr6:130313-130047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 208
               

               
Conread position:
               
62-334
               

               
Cow position:
               
chr6:9219125-9219391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
62-334
               

               
Cow position:
               
chr6:17313582-17313858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 238
               

               
Conread position:
               
62-336
               

               
Cow position:
               
chr6:12092132-12091866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
62-336
               

               
Cow position:
               
chr6:21587569-21587304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
62-340
               

               
Cow position:
               
chr6:42961515-42961232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
62-343
               

               
Cow position:
               
chr6:25008566-25008853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
62-351
               

               
Cow position:
               
chr6:46283146-46282861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 23
               

               
Conread position:
               
62-355
               

               
Cow position:
               
chr6:12551118-12551417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
62-356
               

               
Cow position:
               
chr6:6060705-6060424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
62-356
               

               
Cow position:
               
chr6:35990371-35990086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 23
               

               
Conread position:
               
62-368
               

               
Cow position:
               
chr6:415946-416285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr6:18988068-18988376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
124, 23
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr6:34196296-34195980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 24
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr6:37149045-37149368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr6:63011316-63011006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
62-385
               

               
Cow position:
               
chr6:26915182-26915504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
52, 22
               

               
Conread position:
               
62-414
               

               
Cow position:
               
chr6:64449241-64449594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
85, 23
               

               
Conread position:
               
62-414
               

               
Cow position:
               
chr6:65259616-65259275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
179, 23
               

               
Conread position:
               
63-249
               

               
Cow position:
               
chr6:18968922-18968740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
118, 21
               

               
Conread position:
               
63-265
               

               
Cow position:
               
chr6:62479313-62479104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
63-332
               

               
Cow position:
               
chr6:59104461-59104725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
63-337
               

               
Cow position:
               
chr6:16103349-16103069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
63-356
               

               
Cow position:
               
chr6:57571326-57571627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 159
               

               
Conread position:
               
63-370
               

               
Cow position:
               
chr6:15242685-15242998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 226
               

               
Conread position:
               
64-316
               

               
Cow position:
               
chr6:31260841-31261100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 158
               

               
Conread position:
               
64-338
               

               
Cow position:
               
chr6:52248281-52248001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 141
               

               
Conread position:
               
64-381
               

               
Cow position:
               
chr6:16316160-16316489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
65-184
               

               
Cow position:
               
chr6:55366466-55366345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
65-223
               

               
Cow position:
               
chr6:57680580-57680414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
65-265
               

               
Cow position:
               
chr6:67304656-67304861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
65-282
               

               
Cow position:
               
chr6:24583379-24583148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
65-313
               

               
Cow position:
               
chr6:21230821-21231076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 178
               

               
Conread position:
               
65-316
               

               
Cow position:
               
chr6:8206191-8206446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
19, 143
               

               
Conread position:
               
65-316
               

               
Cow position:
               
chr6:43789371-43789111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
19, 144
               

               
Conread position:
               
65-326
               

               
Cow position:
               
chr6:13592565-13592824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
65-327
               

               
Cow position:
               
chr6:19427304-19427567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
20, 195
               

               
Conread position:
               
65-329
               

               
Cow position:
               
chr6:7173902-7173631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 228
               

               
Conread position:
               
65-336
               

               
Cow position:
               
chr6:6943827-6943554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
65-336
               

               
Cow position:
               
chr6:19681672-19681398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 68
               

               
Conread position:
               
65-336
               

               
Cow position:
               
chr6:24623122-24622847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
65-336
               

               
Cow position:
               
chr6:36194442-36194722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 188
               

               
Conread position:
               
65-343
               

               
Cow position:
               
chr6:11160154-11159872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
65-351
               

               
Cow position:
               
chr6:19755222-19754939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 72
               

               
Conread position:
               
65-368
               

               
Cow position:
               
chr6:51968915-51969236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
66-206
               

               
Cow position:
               
chr6:66453654-66453798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
66-272
               

               
Cow position:
               
chr6:44756894-44757098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
19, 108
               

               
Conread position:
               
66-277
               

               
Cow position:
               
chr6:22968933-22969151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
66-278
               

               
Cow position:
               
chr6:16634364-16634152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
66-307
               

               
Cow position:
               
chr6:639670-639911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
66-327
               

               
Cow position:
               
chr6:54365472-54365211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 19
               

               
Conread position:
               
66-356
               

               
Cow position:
               
chr6:16191522-16191819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
66-356
               

               
Cow position:
               
chr6:40032045-40032338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 207
               

               
Conread position:
               
67-326
               

               
Cow position:
               
chr6:19996477-19996730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
67-327
               

               
Cow position:
               
chr6:2896607-2896857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 109
               

               
Conread position:
               
68-324
               

               
Cow position:
               
chr6:67618101-67617834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
16, 148
               

               
Conread position:
               
68-336
               

               
Cow position:
               
chr6:54573097-54573386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
19, 237
               

               
Conread position:
               
69-268
               

               
Cow position:
               
chr6:19351298-19351099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
69-316
               

               
Cow position:
               
chr6:8534784-8534533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
69-328
               

               
Cow position:
               
chr6:16746195-16746461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 143
               

               
Conread position:
               
69-331
               

               
Cow position:
               
chr6:48010666-48010405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 133
               

               
Conread position:
               
69-334
               

               
Cow position:
               
chr6:38609823-38610093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 158
               

               
Conread position:
               
69-336
               

               
Cow position:
               
chr6:54144160-54144429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
16, 169
               

               
Conread position:
               
69-337
               

               
Cow position:
               
chr6:4468614-4468896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
69-370
               

               
Cow position:
               
chr6:67187544-67187848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
69-377
               

               
Cow position:
               
chr6:27658083-27658395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 127
               

               
Conread position:
               
70-269
               

               
Cow position:
               
chr6:9323018-9323209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
70-367
               

               
Cow position:
               
chr6:8562576-8562880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 222
               

               
Conread position:
               
71-316
               

               
Cow position:
               
chr6:63286649-63286399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 220
               

               
Conread position:
               
72-316
               

               
Cow position:
               
chr6:28414792-28414541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
13, 221
               

               
Conread position:
               
73-356
               

               
Cow position:
               
chr6:21590551-21590855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
73-379
               

               
Cow position:
               
chr6:60118009-60118324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
74-248
               

               
Cow position:
               
chr6:358030-357847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 161
               

               
Conread position:
               
74-277
               

               
Cow position:
               
chr6:31425699-31425494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
74-336
               

               
Cow position:
               
chr6:827842-827581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
74-342
               

               
Cow position:
               
chr6:15022697-15022414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
74-349
               

               
Cow position:
               
chr6:21004529-21004816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
64, 204
               

               
Conread position:
               
74-355
               

               
Cow position:
               
chr6:50577384-50577667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
10, 165
               

               
Conread position:
               
74-364
               

               
Cow position:
               
chr6:48803777-48803483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
10, 219
               

               
Conread position:
               
74-368
               

               
Cow position:
               
chr6:55282426-55282132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
75-325
               

               
Cow position:
               
chr6:1371366-1371111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
76-213
               

               
Cow position:
               
chr6:24327277-24327135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
76-334
               

               
Cow position:
               
chr6:20206140-20206400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
77-224
               

               
Cow position:
               
chr6:1907407-1907558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
77-237
               

               
Cow position:
               
chr6:27710522-27710683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
77-325
               

               
Cow position:
               
chr6:21399890-21399641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 109
               

               
Conread position:
               
77-327
               

               
Cow position:
               
chr6:47616746-47616493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
9, 166
               

               
Conread position:
               
77-351
               

               
Cow position:
               
chr6:67456576-67456861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
8, 147
               

               
Conread position:
               
77-356
               

               
Cow position:
               
chr6:38640094-38640381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 208
               

               
Conread position:
               
77-362
               

               
Cow position:
               
chr6:54936440-54936733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 167
               

               
Conread position:
               
77-382
               

               
Cow position:
               
chr6:28084148-28083846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
8, 119
               

               
Conread position:
               
77-414
               

               
Cow position:
               
chr6:55892629-55892970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 140
               

               
Conread position:
               
78-276
               

               
Cow position:
               
chr6:34075882-34076096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
78-336
               

               
Cow position:
               
chr6:21234908-21235170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 155
               

               
Conread position:
               
78-364
               

               
Cow position:
               
chr6:29000058-28999784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
79-347
               

               
Cow position:
               
chr6:52002233-52002494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 65
               

               
Conread position:
               
79-351
               

               
Cow position:
               
chr6:45388195-45388466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
6, 133
               

               
Conread position:
               
79-420
               

               
Cow position:
               
chr6:30160189-30160540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
81, 141
               

               
Conread position:
               
80-271
               

               
Cow position:
               
chr6:21052639-21052445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
81-370
               

               
Cow position:
               
chr6:21062024-21061727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
61, 207
               

               
Conread position:
               
82-370
               

               
Cow position:
               
chr6:35435868-35436155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
83-252
               

               
Cow position:
               
chr6:5462184-5462015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
83-269
               

               
Cow position:
               
chr6:34031533-34031721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
98, 129
               

               
Conread position:
               
83-301
               

               
Cow position:
               
chr6:12829352-12829134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
83-316
               

               
Cow position:
               
chr6:52697851-52698088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
54, 123
               

               
Conread position:
               
83-323
               

               
Cow position:
               
chr6:3081260-3081003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
57, 220
               

               
Conread position:
               
83-327
               

               
Cow position:
               
chr6:51840140-51840395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 214
               

               
Conread position:
               
83-331
               

               
Cow position:
               
chr6:30123322-30123048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 145
               

               
Conread position:
               
83-334
               

               
Cow position:
               
chr6:53401234-53401481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 54
               

               
Conread position:
               
83-334
               

               
Cow position:
               
chr6:63252053-63251799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
62, 206
               

               
Conread position:
               
83-336
               

               
Cow position:
               
chr6:31564463-31564211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
83-336
               

               
Cow position:
               
chr6:45596668-45596407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
52, 211
               

               
Conread position:
               
83-341
               

               
Cow position:
               
chr6:59508230-59508485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
83-356
               

               
Cow position:
               
chr6:53841629-53841358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
76, 132
               

               
Conread position:
               
83-368
               

               
Cow position:
               
chr6:32269005-32268728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
247, 11
               

               
Conread position:
               
83-368
               

               
Cow position:
               
chr6:60667291-60667571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
83-379
               

               
Cow position:
               
chr6:16625817-16626114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
82, 56
               

               
Conread position:
               
83-379
               

               
Cow position:
               
chr6:20255518-20255243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
248, 56
               

               
Conread position:
               
83-419
               

               
Cow position:
               
chr6:9026387-9026735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
77, 207
               

               
Conread position:
               
83-419
               

               
Cow position:
               
chr6:24223290-24222937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 210
               

               
Conread position:
               
84-310
               

               
Cow position:
               
chr6:4559432-4559205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
84-314
               

               
Cow position:
               
chr6:9469520-9469746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
9, 143
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr6:62669745-62670005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
84-355
               

               
Cow position:
               
chr6:63720066-63720347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
99, 203
               

               
Conread position:
               
85-363
               

               
Cow position:
               
chr6:61168647-61168910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
245, 111
               

               
Conread position:
               
85-368
               

               
Cow position:
               
chr6:66531948-66531660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
86-316
               

               
Cow position:
               
chr6:60446133-60446366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 150
               

               
Conread position:
               
86-323
               

               
Cow position:
               
chr6:31814864-31814636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
86-330
               

               
Cow position:
               
chr6:29239812-29240060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
50, 135
               

               
Conread position:
               
86-331
               

               
Cow position:
               
chr6:22850372-22850133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
51, 126
               

               
Conread position:
               
86-331
               

               
Cow position:
               
chr6:50467008-50467257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 203
               

               
Conread position:
               
87-252
               

               
Cow position:
               
chr6:1510463-1510634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
98, 8
               

               
Conread position:
               
87-258
               

               
Cow position:
               
chr6:32335676-32335850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
54, 20
               

               
Conread position:
               
87-276
               

               
Cow position:
               
chr6:38233834-38234026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
87-284
               

               
Cow position:
               
chr6:18961642-18961440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
93, 124
               

               
Conread position:
               
87-291
               

               
Cow position:
               
chr6:37376643-37376433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 204
               

               
Conread position:
               
87-356
               

               
Cow position:
               
chr6:13367167-13367433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 54
               

               
Conread position:
               
87-358
               

               
Cow position:
               
chr6:49421909-49421641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
242, 115
               

               
Conread position:
               
87-379
               

               
Cow position:
               
chr6:24004417-24004702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
98, 125
               

               
Conread position:
               
88-265
               

               
Cow position:
               
chr6:33150531-33150352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 120
               

               
Conread position:
               
88-336
               

               
Cow position:
               
chr6:38018142-38018388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
240, 75
               

               
Conread position:
               
88-336
               

               
Cow position:
               
chr6:52602368-52602132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
90-272
               

               
Cow position:
               
chr6:54287949-54288139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
51, 123
               

               
Conread position:
               
91-335
               

               
Cow position:
               
chr6:42566739-42566980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
91-343
               

               
Cow position:
               
chr6:5413697-5413957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
29, 143
               

               
Conread position:
               
92-250
               

               
Cow position:
               
chr6:38594489-38594334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
121, 7
               

               
Conread position:
               
92-354
               

               
Cow position:
               
chr6:16675685-16675952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
92-364
               

               
Cow position:
               
chr6:57119060-57118792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
50, 132
               

               
Conread position:
               
92-368
               

               
Cow position:
               
chr6:10400022-10399743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
48, 125
               

               
Conread position:
               
92-379
               

               
Cow position:
               
chr6:38771163-38771453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
93-221
               

               
Cow position:
               
chr6:30786274-30786141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
93-225
               

               
Cow position:
               
chr6:10423052-10423183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 46
               

               
Conread position:
               
93-252
               

               
Cow position:
               
chr6:24515313-24515155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
90, 126
               

               
Conread position:
               
93-258
               

               
Cow position:
               
chr6:29266085-29266253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
93-266
               

               
Cow position:
               
chr6:25773503-25773328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
93-266
               

               
Cow position:
               
chr6:56041742-56041566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
93-278
               

               
Cow position:
               
chr6:24652308-24652125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
93-283
               

               
Cow position:
               
chr6:11637872-11637682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
43, 71
               

               
Conread position:
               
93-283
               

               
Cow position:
               
chr6:58589897-58590096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
93-300
               

               
Cow position:
               
chr6:242690-242891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
93-303
               

               
Cow position:
               
chr6:44127486-44127705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 201
               

               
Conread position:
               
93-309
               

               
Cow position:
               
chr6:32287518-32287738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 118
               

               
Conread position:
               
93-325
               

               
Cow position:
               
chr6:16261666-16261893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
93-325
               

               
Cow position:
               
chr6:17704699-17704946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 208
               

               
Conread position:
               
93-327
               

               
Cow position:
               
chr6:377011-377242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
93-328
               

               
Cow position:
               
chr6:50975938-50976166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
93-334
               

               
Cow position:
               
chr6:35725975-35726219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
53, 123
               

               
Conread position:
               
93-334
               

               
Cow position:
               
chr6:36189577-36189822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
51, 190
               

               
Conread position:
               
93-337
               

               
Cow position:
               
chr6:28477058-28477296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
237, 93
               

               
Conread position:
               
93-351
               

               
Cow position:
               
chr6:4383366-4383621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 93
               

               
Conread position:
               
93-351
               

               
Cow position:
               
chr6:43135064-43134796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
93-351
               

               
Cow position:
               
chr6:66874231-66874492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
93-354
               

               
Cow position:
               
chr6:10225759-10225510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
93, 125
               

               
Conread position:
               
93-355
               

               
Cow position:
               
chr6:6965507-6965253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
236, 27
               

               
Conread position:
               
93-355
               

               
Cow position:
               
chr6:7130997-7130733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
183, 14
               

               
Conread position:
               
93-355
               

               
Cow position:
               
chr6:25615222-25614944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
93-368
               

               
Cow position:
               
chr6:23402109-23401832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 47
               

               
Conread position:
               
93-368
               

               
Cow position:
               
chr6:31635809-31635525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
93-368
               

               
Cow position:
               
chr6:56849894-56850174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
93-377
               

               
Cow position:
               
chr6:35842530-35842826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
44, 164
               

               
Conread position:
               
93-377
               

               
Cow position:
               
chr6:57405249-57404964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
34, 133
               

               
Conread position:
               
93-379
               

               
Cow position:
               
chr6:46292462-46292173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
93-412
               

               
Cow position:
               
chr6:47799171-47799501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 133
               

               
Conread position:
               
93-419
               

               
Cow position:
               
chr6:12652086-12652420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
57, 197
               

               
Conread position:
               
93-420
               

               
Cow position:
               
chr6:53673743-53674083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
94-337
               

               
Cow position:
               
chr6:59296880-59297122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 66
               

               
Conread position:
               
95-277
               

               
Cow position:
               
chr6:3545577-3545763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
69, 44
               

               
Conread position:
               
95-283
               

               
Cow position:
               
chr6:46998262-46998065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 10
               

               
Conread position:
               
95-323
               

               
Cow position:
               
chr6:54140690-54140910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
43, 85
               

               
Conread position:
               
95-325
               

               
Cow position:
               
chr6:18049148-18048909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
41, 124
               

               
Conread position:
               
95-327
               

               
Cow position:
               
chr6:8125210-8125443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 115
               

               
Conread position:
               
95-333
               

               
Cow position:
               
chr6:8318282-8318034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 153
               

               
Conread position:
               
95-334
               

               
Cow position:
               
chr6:19401739-19401973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
95-336
               

               
Cow position:
               
chr6:582389-582146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
95-336
               

               
Cow position:
               
chr6:12668985-12669222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
95-356
               

               
Cow position:
               
chr6:5302526-5302272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
95-370
               

               
Cow position:
               
chr6:66131185-66131472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
41, 133
               

               
Conread position:
               
95-379
               

               
Cow position:
               
chr6:54490862-54490564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
50, 202
               

               
Conread position:
               
95-387
               

               
Cow position:
               
chr6:54864789-54864478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
47, 203
               

               
Conread position:
               
95-419
               

               
Cow position:
               
chr6:45065132-45064795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 45
               

               
Conread position:
               
96-317
               

               
Cow position:
               
chr6:54854132-54854357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr6:12845262-12845502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
51, 136
               

               
Conread position:
               
96-379
               

               
Cow position:
               
chr6:11192583-11192298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
85, 48
               

               
Conread position:
               
97-275
               

               
Cow position:
               
chr6:57298900-57299081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
97-327
               

               
Cow position:
               
chr6:34549295-34549518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
128, 58
               

               
Conread position:
               
97-336
               

               
Cow position:
               
chr6:21514735-21514481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
97-356
               

               
Cow position:
               
chr6:28977151-28976892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 61
               

               
Conread position:
               
97-374
               

               
Cow position:
               
chr6:58597620-58597338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 187
               

               
Conread position:
               
98-280
               

               
Cow position:
               
chr6:6995065-6994880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
98-328
               

               
Cow position:
               
chr6:55209441-55209675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
100-232
               

               
Cow position:
               
chr6:56849030-56848890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
101-304
               

               
Cow position:
               
chr6:50639196-50639397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
122, 71
               

               
Conread position:
               
101-327
               

               
Cow position:
               
chr6:46173370-46173142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
101-356
               

               
Cow position:
               
chr6:10039609-10039871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
101-356
               

               
Cow position:
               
chr6:61524310-61524057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
228, 12
               

               
Conread position:
               
102-281
               

               
Cow position:
               
chr6:6470750-6470572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 48
               

               
Conread position:
               
103-316
               

               
Cow position:
               
chr6:17557271-17557487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 111
               

               
Conread position:
               
103-379
               

               
Cow position:
               
chr6:59603317-59603033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 46
               

               
Conread position:
               
104-328
               

               
Cow position:
               
chr6:54208248-54208017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
105-363
               

               
Cow position:
               
chr6:17549089-17548818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
76, 200
               

               
Conread position:
               
109-325
               

               
Cow position:
               
chr6:16266615-16266839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr6:26043648-26043865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 103
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr6:36645284-36645512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
38, 89
               

               
Conread position:
               
109-361
               

               
Cow position:
               
chr6:59718692-59718949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 117
               

               
Conread position:
               
109-363
               

               
Cow position:
               
chr6:62371285-62371028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
109-368
               

               
Cow position:
               
chr6:43345550-43345281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
109-368
               

               
Cow position:
               
chr6:55417626-55417368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 108
               

               
Conread position:
               
109-379
               

               
Cow position:
               
chr6:7119714-7119448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 46
               

               
Conread position:
               
109-379
               

               
Cow position:
               
chr6:33206643-33206911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
110-337
               

               
Cow position:
               
chr6:60274109-60273881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
111-334
               

               
Cow position:
               
chr6:34251393-34251175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
31, 107
               

               
Conread position:
               
111-336
               

               
Cow position:
               
chr6:1429537-1429767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
111-414
               

               
Cow position:
               
chr6:20196395-20196091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
113-334
               

               
Cow position:
               
chr6:51486318-51486540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
54, 176
               

               
Conread position:
               
114-316
               

               
Cow position:
               
chr6:59798558-59798753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
23, 93
               

               
Conread position:
               
114-331
               

               
Cow position:
               
chr6:6063390-6063172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
24, 100
               

               
Conread position:
               
114-331
               

               
Cow position:
               
chr6:27240105-27239884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 104
               

               
Conread position:
               
114-336
               

               
Cow position:
               
chr6:17794855-17794637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
114-336
               

               
Cow position:
               
chr6:52901135-52901365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
67, 178
               

               
Conread position:
               
114-337
               

               
Cow position:
               
chr6:61269210-61269440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
9, 177
               

               
Conread position:
               
114-356
               

               
Cow position:
               
chr6:16764751-16764498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
70, 103
               

               
Conread position:
               
114-368
               

               
Cow position:
               
chr6:35103431-35103168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
116-356
               

               
Cow position:
               
chr6:3592304-3592545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
116-356
               

               
Cow position:
               
chr6:13564987-13565234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
65, 156
               

               
Conread position:
               
117-351
               

               
Cow position:
               
chr6:66375426-66375189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
68, 96
               

               
Conread position:
               
117-386
               

               
Cow position:
               
chr6:19292702-19292975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
118-351
               

               
Cow position:
               
chr6:44867636-44867400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
119-323
               

               
Cow position:
               
chr6:3595694-3595904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
119-336
               

               
Cow position:
               
chr6:35775078-35774857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 170
               

               
Conread position:
               
121-368
               

               
Cow position:
               
chr6:143460-143214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
122-336
               

               
Cow position:
               
chr6:19045533-19045749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
122-406
               

               
Cow position:
               
chr6:17245697-17245418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
61, 8
               

               
Conread position:
               
122-414
               

               
Cow position:
               
chr6:10487496-10487792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
64, 109
               

               
Conread position:
               
123-328
               

               
Cow position:
               
chr6:60673479-60673683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
124-355
               

               
Cow position:
               
chr6:37332018-37332257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
57, 74
               

               
Conread position:
               
125-335
               

               
Cow position:
               
chr6:6067780-6067576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
125-336
               

               
Cow position:
               
chr6:24110196-24110408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
125-337
               

               
Cow position:
               
chr6:6673014-6673234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
11, 102
               

               
Conread position:
               
127-356
               

               
Cow position:
               
chr6:67451451-67451223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
202, 16
               

               
Conread position:
               
127-364
               

               
Cow position:
               
chr6:37462936-37463178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 161
               

               
Conread position:
               
129-364
               

               
Cow position:
               
chr6:20929600-20929358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
45, 162
               

               
Conread position:
               
130-309
               

               
Cow position:
               
chr6:28283783-28283960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 70
               

               
Conread position:
               
130-314
               

               
Cow position:
               
chr6:18660102-18659908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 65
               

               
Conread position:
               
131-307
               

               
Cow position:
               
chr6:54365085-54364895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
55, 169
               

               
Conread position:
               
134-355
               

               
Cow position:
               
chr6:23466108-23465887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 75
               

               
Conread position:
               
134-356
               

               
Cow position:
               
chr6:2623703-2623921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
134-356
               

               
Cow position:
               
chr6:60516749-60516973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
135-334
               

               
Cow position:
               
chr6:33509712-33509911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
49, 97
               

               
Conread position:
               
135-379
               

               
Cow position:
               
chr6:5330337-5330596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
136-377
               

               
Cow position:
               
chr6:22985935-22985682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 112
               

               
Conread position:
               
139-317
               

               
Cow position:
               
chr6:694221-694044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
139-323
               

               
Cow position:
               
chr6:55546251-55546062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
46, 155
               

               
Conread position:
               
139-337
               

               
Cow position:
               
chr6:59770157-59770352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
139-356
               

               
Cow position:
               
chr6:17068723-17068500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
44, 103
               

               
Conread position:
               
140-277
               

               
Cow position:
               
chr6:30688685-30688547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
140-308
               

               
Cow position:
               
chr6:36493622-36493443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 71
               

               
Conread position:
               
140-356
               

               
Cow position:
               
chr6:67281824-67282042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
66, 103
               

               
Conread position:
               
140-379
               

               
Cow position:
               
chr6:66590015-66590253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 5
               

               
Conread position:
               
141-371
               

               
Cow position:
               
chr6:29248419-29248640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
187, 48
               

               
Conread position:
               
142-358
               

               
Cow position:
               
chr6:16288123-16287913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
188, 82
               

               
Conread position:
               
143-356
               

               
Cow position:
               
chr6:7801458-7801249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 44
               

               
Conread position:
               
143-356
               

               
Cow position:
               
chr6:50504387-50504604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 144
               

               
Conread position:
               
144-354
               

               
Cow position:
               
chr6:67643760-67643545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
145-238
               

               
Cow position:
               
chr6:35694817-35694724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-268
               

               
Cow position:
               
chr6:35654914-35654795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
145-296
               

               
Cow position:
               
chr6:31228700-31228851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
145-316
               

               
Cow position:
               
chr6:32043784-32043953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
81, 60
               

               
Conread position:
               
145-325
               

               
Cow position:
               
chr6:28973097-28972921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
145-325
               

               
Cow position:
               
chr6:54600278-54600463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
41, 145
               

               
Conread position:
               
145-334
               

               
Cow position:
               
chr6:8599937-8600124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
145-334
               

               
Cow position:
               
chr6:58608507-58608319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
145-335
               

               
Cow position:
               
chr6:9302784-9302594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
145-336
               

               
Cow position:
               
chr6:11830127-11830315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
145-362
               

               
Cow position:
               
chr6:18118120-18117896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
41, 148
               

               
Conread position:
               
145-415
               

               
Cow position:
               
chr6:33929618-33929336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
39, 150
               

               
Conread position:
               
146-303
               

               
Cow position:
               
chr6:26765081-26764925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
146-324
               

               
Cow position:
               
chr6:6724436-6724619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 146
               

               
Conread position:
               
146-364
               

               
Cow position:
               
chr6:36284175-36284398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
146-377
               

               
Cow position:
               
chr6:37395475-37395231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 149
               

               
Conread position:
               
147-351
               

               
Cow position:
               
chr6:65846185-65845989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
145, 5
               

               
Conread position:
               
147-356
               

               
Cow position:
               
chr6:49437278-49437481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
182, 29
               

               
Conread position:
               
147-356
               

               
Cow position:
               
chr6:55535809-55535604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
183, 72
               

               
Conread position:
               
147-363
               

               
Cow position:
               
chr6:61142630-61142408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
147-367
               

               
Cow position:
               
chr6:28179012-28178796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 135
               

               
Conread position:
               
147-370
               

               
Cow position:
               
chr6:31078936-31078707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
148-349
               

               
Cow position:
               
chr6:2153657-2153459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
149-336
               

               
Cow position:
               
chr6:35896404-35896226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
149-370
               

               
Cow position:
               
chr6:23353489-23353712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
149-386
               

               
Cow position:
               
chr6:24536606-24536353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 150
               

               
Conread position:
               
149-401
               

               
Cow position:
               
chr6:60468173-60468433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
150-325
               

               
Cow position:
               
chr6:5845235-5845056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
155-356
               

               
Cow position:
               
chr6:18144135-18144345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
157-356
               

               
Cow position:
               
chr6:19131381-19131578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
173, 25
               

               
Conread position:
               
158-337
               

               
Cow position:
               
chr6:68652408-68652223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
28, 133
               

               
Conread position:
               
159-336
               

               
Cow position:
               
chr6:36454639-36454469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
169, 60
               

               
Conread position:
               
159-379
               

               
Cow position:
               
chr6:16352401-16352181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
160-371
               

               
Cow position:
               
chr6:2078868-2078653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
5, 48
               

               
Conread position:
               
161-321
               

               
Cow position:
               
chr6:1929250-1929398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
161-367
               

               
Cow position:
               
chr6:48468952-48469159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 64
               

               
Conread position:
               
163-309
               

               
Cow position:
               
chr6:21347339-21347194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
163-333
               

               
Cow position:
               
chr6:12964809-12964976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
165, 13
               

               
Conread position:
               
163-377
               

               
Cow position:
               
chr6:60144249-60144027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 76
               

               
Conread position:
               
164-355
               

               
Cow position:
               
chr6:3350976-3351175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
164-415
               

               
Cow position:
               
chr6:59633091-59633337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
71, 119
               

               
Conread position:
               
165-265
               

               
Cow position:
               
chr6:31928280-31928380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
165-365
               

               
Cow position:
               
chr6:51294241-51294442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
163, 119
               

               
Conread position:
               
166-351
               

               
Cow position:
               
chr6:47958769-47958954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
19, 103
               

               
Conread position:
               
166-363
               

               
Cow position:
               
chr6:47306179-47305996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
168-335
               

               
Cow position:
               
chr6:32517139-32516983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
161, 39
               

               
Conread position:
               
170-369
               

               
Cow position:
               
chr6:60266217-60266020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
159, 9
               

               
Conread position:
               
171-355
               

               
Cow position:
               
chr6:32853152-32853334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
172-356
               

               
Cow position:
               
chr6:51530219-51530040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
176-327
               

               
Cow position:
               
chr6:12197146-12197297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 109
               

               
Conread position:
               
176-368
               

               
Cow position:
               
chr6:41656075-41655882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
154, 108
               

               
Conread position:
               
177-355
               

               
Cow position:
               
chr6:18904083-18903905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
152, 81
               

               
Conread position:
               
178-360
               

               
Cow position:
               
chr6:36921004-36920825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
150, 19
               

               
Conread position:
               
178-377
               

               
Cow position:
               
chr6:56715790-56715987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
178-379
               

               
Cow position:
               
chr6:57287689-57287492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 16
               

               
Conread position:
               
178-416
               

               
Cow position:
               
chr6:67451677-67451427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
179-306
               

               
Cow position:
               
chr6:8094319-8094193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
179-362
               

               
Cow position:
               
chr6:46330891-46331073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 104
               

               
Conread position:
               
179-367
               

               
Cow position:
               
chr6:47885050-47884871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
151, 40
               

               
Conread position:
               
179-414
               

               
Cow position:
               
chr6:23298295-23298525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
179-419
               

               
Cow position:
               
chr6:19259373-19259118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
41, 105
               

               
Conread position:
               
179-419
               

               
Cow position:
               
chr6:54083019-54082774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 68
               

               
Conread position:
               
181-356
               

               
Cow position:
               
chr6:62056586-62056762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
149, 107
               

               
Conread position:
               
182-325
               

               
Cow position:
               
chr6:47778848-47778990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
55, 49
               

               
Conread position:
               
182-334
               

               
Cow position:
               
chr6:41015002-41014854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
182-336
               

               
Cow position:
               
chr6:56986670-56986524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
146, 33
               

               
Conread position:
               
182-337
               

               
Cow position:
               
chr6:51086045-51086196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
148, 35
               

               
Conread position:
               
182-355
               

               
Cow position:
               
chr6:63065799-63065976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
183-356
               

               
Cow position:
               
chr6:2584917-2585090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
145, 41
               

               
Conread position:
               
183-379
               

               
Cow position:
               
chr6:66570413-66570610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
38, 21
               

               
Conread position:
               
183-385
               

               
Cow position:
               
chr6:57089172-57089380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
87, 107
               

               
Conread position:
               
184-323
               

               
Cow position:
               
chr6:67728347-67728488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 104
               

               
Conread position:
               
184-356
               

               
Cow position:
               
chr6:26155128-26155296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
144, 28
               

               
Conread position:
               
186-332
               

               
Cow position:
               
chr6:55502744-55502889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
142, 33
               

               
Conread position:
               
186-336
               

               
Cow position:
               
chr6:53089986-53090136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
144, 107
               

               
Conread position:
               
186-415
               

               
Cow position:
               
chr6:44623586-44623824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
142, 98
               

               
Conread position:
               
188-330
               

               
Cow position:
               
chr6:20605935-20606081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 100
               

               
Conread position:
               
189-368
               

               
Cow position:
               
chr6:59301806-59301628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
190-331
               

               
Cow position:
               
chr6:35319153-35319012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
191-337
               

               
Cow position:
               
chr6:4702841-4702696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
191-364
               

               
Cow position:
               
chr6:54217444-54217268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
192-356
               

               
Cow position:
               
chr6:20219794-20219628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
192-364
               

               
Cow position:
               
chr6:1103752-1103584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
155, 25
               

               
Conread position:
               
193-336
               

               
Cow position:
               
chr6:60451407-60451554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
194-351
               

               
Cow position:
               
chr6:32453373-32453526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
195-377
               

               
Cow position:
               
chr6:48379628-48379445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
133, 89
               

               
Conread position:
               
199-373
               

               
Cow position:
               
chr6:67806027-67805850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
201-360
               

               
Cow position:
               
chr6:68047158-68046993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
202-363
               

               
Cow position:
               
chr6:36011901-36012056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
127, 14
               

               
Conread position:
               
203-419
               

               
Cow position:
               
chr6:1475339-1475577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
127, 81
               

               
Conread position:
               
204-334
               

               
Cow position:
               
chr6:57079417-57079548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
204-356
               

               
Cow position:
               
chr6:21475720-21475874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
204-356
               

               
Cow position:
               
chr6:58459717-58459868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
20, 8
               

               
Conread position:
               
207-325
               

               
Cow position:
               
chr6:20485697-20485580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
210-370
               

               
Cow position:
               
chr6:61575827-61575981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
120, 9
               

               
Conread position:
               
211-355
               

               
Cow position:
               
chr6:58725372-58725515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
117, 73
               

               
Conread position:
               
211-377
               

               
Cow position:
               
chr6:61109789-61109954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
118, 73
               

               
Conread position:
               
212-349
               

               
Cow position:
               
chr6:7568126-7568265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 39
               

               
Conread position:
               
214-326
               

               
Cow position:
               
chr6:21470424-21470313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
216-356
               

               
Cow position:
               
chr6:11137237-11137382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
6, 100
               

               
Conread position:
               
216-416
               

               
Cow position:
               
chr6:1871191-1870996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
114, 68
               

               
Conread position:
               
217-368
               

               
Cow position:
               
chr6:30023893-30024045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
111, 67
               

               
Conread position:
               
218-336
               

               
Cow position:
               
chr6:37692760-37692876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
218-350
               

               
Cow position:
               
chr6:69153422-69153550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
110, 36
               

               
Conread position:
               
219-368
               

               
Cow position:
               
chr6:54127803-54127656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 66
               

               
Conread position:
               
220-348
               

               
Cow position:
               
chr6:33450959-33450835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
109, 66
               

               
Conread position:
               
220-351
               

               
Cow position:
               
chr6:1002252-1002120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 61
               

               
Conread position:
               
221-367
               

               
Cow position:
               
chr6:23610954-23611108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
224-416
               

               
Cow position:
               
chr6:43651767-43651961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
105, 64
               

               
Conread position:
               
228-356
               

               
Cow position:
               
chr6:50771340-50771215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
100, 37
               

               
Conread position:
               
237-356
               

               
Cow position:
               
chr6:51933582-51933697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
92, 49
               

               
Conread position:
               
240-351
               

               
Cow position:
               
chr6:16090934-16091046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
240-370
               

               
Cow position:
               
chr6:60516656-60516784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
240-392
               

               
Cow position:
               
chr6:23938091-23938242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
89, 44
               
Show alignments to all cow chromosomes.