Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rnbm29b_l4.5
        

               Conread position:
               62-388
               

               Cow position:
               chr1:22615558-22615885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               314, 0
               

               Conread position:
               101-407
               

               Cow position:
               chr1:95712238-95712548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               273, 0
               

               Conread position:
               136-407
               

               Cow position:
               chr1:24133074-24133337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               238, 24
               

               Conread position:
               136-413
               

               Cow position:
               chr1:33717216-33716932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               137-338
               

               Cow position:
               chr1:101207810-101207623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               21, 48
               

               Conread position:
               137-389
               

               Cow position:
               chr1:85774442-85774198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               14, 45
               

               Conread position:
               138-320
               

               Cow position:
               chr1:71228073-71227885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               138-333
               

               Cow position:
               chr1:95654729-95654920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               154
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               138-389
               

               Cow position:
               chr1:67821226-67821471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               237, 15
               

               Conread position:
               138-389
               

               Cow position:
               chr1:71295321-71295569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               69, 35
               

               Conread position:
               138-399
               

               Cow position:
               chr1:84255751-84255484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               138-407
               

               Cow position:
               chr1:72304390-72304652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               11, 66
               

               Conread position:
               139-275
               

               Cow position:
               chr1:43703392-43703257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               139-280
               

               Cow position:
               chr1:85826329-85826191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               12, 91
               

               Conread position:
               139-288
               

               Cow position:
               chr1:100745591-100745443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               98, 10
               

               Conread position:
               139-297
               

               Cow position:
               chr1:19568834-19568680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               139-298
               

               Cow position:
               chr1:101632354-101632508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               139-307
               

               Cow position:
               chr1:75933258-75933094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               16, 91
               

               Conread position:
               139-316
               

               Cow position:
               chr1:724723-724547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               16, 100
               

               Conread position:
               139-316
               

               Cow position:
               chr1:33206893-33207062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               139-316
               

               Cow position:
               chr1:102113119-102113296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               12, 99
               

               Conread position:
               139-323
               

               Cow position:
               chr1:82443471-82443651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               139-324
               

               Cow position:
               chr1:6788300-6788485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               8, 99
               

               Conread position:
               139-326
               

               Cow position:
               chr1:64421314-64421133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               100, 60
               

               Conread position:
               139-327
               

               Cow position:
               chr1:51654396-51654212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               151
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               139-334
               

               Cow position:
               chr1:101867331-101867150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               5, 55
               

               Conread position:
               139-335
               

               Cow position:
               chr1:12464681-12464870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               139-335
               

               Cow position:
               chr1:100393182-100393371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               15, 9
               

               Conread position:
               139-344
               

               Cow position:
               chr1:84910647-84910849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               20, 36
               

               Conread position:
               139-348
               

               Cow position:
               chr1:45673693-45673492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               139-351
               

               Cow position:
               chr1:34771520-34771726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               128, 42
               

               Conread position:
               139-352
               

               Cow position:
               chr1:26943291-26943088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               139-354
               

               Cow position:
               chr1:87072682-87072479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               12, 47
               

               Conread position:
               139-355
               

               Cow position:
               chr1:15333870-15333655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               8, 117
               

               Conread position:
               139-360
               

               Cow position:
               chr1:101812290-101812506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               15, 143
               

               Conread position:
               139-361
               

               Cow position:
               chr1:24728856-24729072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               95, 24
               

               Conread position:
               139-361
               

               Cow position:
               chr1:43389064-43389280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               11, 57
               

               Conread position:
               139-361
               

               Cow position:
               chr1:79278462-79278674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               139-364
               

               Cow position:
               chr1:31234948-31235169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               217, 9
               

               Conread position:
               139-364
               

               Cow position:
               chr1:51818925-51818706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               139-367
               

               Cow position:
               chr1:26729701-26729490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               139-367
               

               Cow position:
               chr1:94404197-94403978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               66, 78
               

               Conread position:
               139-370
               

               Cow position:
               chr1:70434982-70434751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               174, 44
               

               Conread position:
               139-373
               

               Cow position:
               chr1:78791321-78791551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               87, 68
               

               Conread position:
               139-374
               

               Cow position:
               chr1:6077884-6077649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               12, 26
               

               Conread position:
               139-375
               

               Cow position:
               chr1:3244833-3244604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               20, 43
               

               Conread position:
               139-375
               

               Cow position:
               chr1:29671537-29671770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               17, 26
               

               Conread position:
               139-375
               

               Cow position:
               chr1:36932140-36931913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               139-375
               

               Cow position:
               chr1:75744845-75744614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               178
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               15, 23
               

               Conread position:
               139-375
               

               Cow position:
               chr1:102349769-102350004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               161, 123
               

               Conread position:
               139-376
               

               Cow position:
               chr1:92369719-92369469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               22, 100
               

               Conread position:
               139-378
               

               Cow position:
               chr1:53423668-53423429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               139-378
               

               Cow position:
               chr1:98594556-98594322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               100, 14
               

               Conread position:
               139-380
               

               Cow position:
               chr1:1916244-1916488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               55, 95
               

               Conread position:
               139-380
               

               Cow position:
               chr1:56658016-56657789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               100, 9
               

               Conread position:
               139-380
               

               Cow position:
               chr1:96712824-96713066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               9, 144
               

               Conread position:
               139-384
               

               Cow position:
               chr1:10719495-10719742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               15, 150
               

               Conread position:
               139-384
               

               Cow position:
               chr1:29935401-29935637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               8, 42
               

               Conread position:
               139-384
               

               Cow position:
               chr1:45555349-45555106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               193, 90
               

               Conread position:
               139-384
               

               Cow position:
               chr1:68826920-68827161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 138
               

               Conread position:
               139-386
               

               Cow position:
               chr1:4291145-4290900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 141
               

               Conread position:
               139-386
               

               Cow position:
               chr1:13414014-13413769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               7, 35
               

               Conread position:
               139-386
               

               Cow position:
               chr1:79165099-79165350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               139-386
               

               Cow position:
               chr1:91800619-91800866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               213, 10
               

               Conread position:
               139-387
               

               Cow position:
               chr1:39068973-39069210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               237, 9
               

               Conread position:
               139-388
               

               Cow position:
               chr1:3661080-3661316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               21, 45
               

               Conread position:
               139-388
               

               Cow position:
               chr1:30413578-30413325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               31, 126
               

               Conread position:
               139-388
               

               Cow position:
               chr1:34686173-34685935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               237, 10
               

               Conread position:
               139-388
               

               Cow position:
               chr1:34856645-34856889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               6, 87
               

               Conread position:
               139-388
               

               Cow position:
               chr1:56748579-56748330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 215
               

               Conread position:
               139-388
               

               Cow position:
               chr1:61884896-61884655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               237, 22
               

               Conread position:
               139-388
               

               Cow position:
               chr1:65103604-65103375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               10, 35
               

               Conread position:
               139-389
               

               Cow position:
               chr1:37322015-37322267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               15, 100
               

               Conread position:
               139-389
               

               Cow position:
               chr1:45535690-45535441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 89
               

               Conread position:
               139-389
               

               Cow position:
               chr1:54478309-54478061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               221, 99
               

               Conread position:
               139-389
               

               Cow position:
               chr1:80900103-80899847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               18, 90
               

               Conread position:
               139-389
               

               Cow position:
               chr1:82337796-82338046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 98
               

               Conread position:
               139-390
               

               Cow position:
               chr1:21954246-21954480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               10, 64
               

               Conread position:
               139-392
               

               Cow position:
               chr1:4032615-4032370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               5, 144
               

               Conread position:
               139-393
               

               Cow position:
               chr1:19482098-19482339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               215, 29
               

               Conread position:
               139-396
               

               Cow position:
               chr1:57900757-57901014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               201
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               167, 16
               

               Conread position:
               139-397
               

               Cow position:
               chr1:99095347-99095096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 15
               

               Conread position:
               139-397
               

               Cow position:
               chr1:101634688-101634432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               12, 46
               

               Conread position:
               139-398
               

               Cow position:
               chr1:666349-666090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 22
               

               Conread position:
               139-398
               

               Cow position:
               chr1:874637-874373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               14, 112
               

               Conread position:
               139-398
               

               Cow position:
               chr1:3167090-3167336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               252, 41
               

               Conread position:
               139-398
               

               Cow position:
               chr1:9869864-9870126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               71, 14
               

               Conread position:
               139-398
               

               Cow position:
               chr1:11913896-11914142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               12, 43
               

               Conread position:
               139-398
               

               Cow position:
               chr1:31499608-31499357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               197
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               15, 64
               

               Conread position:
               139-398
               

               Cow position:
               chr1:41004377-41004637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 90
               

               Conread position:
               139-398
               

               Cow position:
               chr1:48105450-48105706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 22
               

               Conread position:
               139-398
               

               Cow position:
               chr1:52753184-52753436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 41
               

               Conread position:
               139-398
               

               Cow position:
               chr1:55428974-55429254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               97, 50
               

               Conread position:
               139-398
               

               Cow position:
               chr1:57698462-57698726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 39
               

               Conread position:
               139-398
               

               Cow position:
               chr1:61725131-61725383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 21
               

               Conread position:
               139-398
               

               Cow position:
               chr1:71045738-71045481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 14
               

               Conread position:
               139-398
               

               Cow position:
               chr1:77462347-77462094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               19, 94
               

               Conread position:
               139-398
               

               Cow position:
               chr1:82504959-82504697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 9
               

               Conread position:
               139-398
               

               Cow position:
               chr1:98563145-98562890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 9
               

               Conread position:
               139-399
               

               Cow position:
               chr1:3720450-3720696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               237, 25
               

               Conread position:
               139-399
               

               Cow position:
               chr1:13637680-13637938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               11, 18
               

               Conread position:
               139-399
               

               Cow position:
               chr1:72737129-72737390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               235, 0
               

               Conread position:
               139-399
               

               Cow position:
               chr1:73522162-73522411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               15, 71
               

               Conread position:
               139-399
               

               Cow position:
               chr1:78689919-78689662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               84, 17
               

               Conread position:
               139-399
               

               Cow position:
               chr1:99807734-99807993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               8, 104
               

               Conread position:
               139-401
               

               Cow position:
               chr1:78811022-78810765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               237, 45
               

               Conread position:
               139-405
               

               Cow position:
               chr1:42873969-42874227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               13, 46
               

               Conread position:
               139-405
               

               Cow position:
               chr1:84811956-84812215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               21, 63
               

               Conread position:
               139-406
               

               Cow position:
               chr1:43822386-43822096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               16, 235
               

               Conread position:
               139-406
               

               Cow position:
               chr1:53458682-53458424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               11, 90
               

               Conread position:
               139-406
               

               Cow position:
               chr1:94526485-94526213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               14, 23
               

               Conread position:
               139-407
               

               Cow position:
               chr1:3456853-3456590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               237, 45
               

               Conread position:
               139-407
               

               Cow position:
               chr1:5872988-5873255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 9
               

               Conread position:
               139-407
               

               Cow position:
               chr1:19440034-19440296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               20, 51
               

               Conread position:
               139-407
               

               Cow position:
               chr1:20384635-20384907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               13, 60
               

               Conread position:
               139-407
               

               Cow position:
               chr1:22448600-22448866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 92
               

               Conread position:
               139-407
               

               Cow position:
               chr1:26702220-26702479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               21, 92
               

               Conread position:
               139-407
               

               Cow position:
               chr1:41056662-41056402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               21, 14
               

               Conread position:
               139-407
               

               Cow position:
               chr1:44155229-44154984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               78, 10
               

               Conread position:
               139-407
               

               Cow position:
               chr1:47543653-47543390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               237, 19
               

               Conread position:
               139-407
               

               Cow position:
               chr1:53425159-53424910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               28, 13
               

               Conread position:
               139-407
               

               Cow position:
               chr1:56225452-56225196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               13, 99
               

               Conread position:
               139-407
               

               Cow position:
               chr1:61564782-61564512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 99
               

               Conread position:
               139-407
               

               Cow position:
               chr1:78783531-78783264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 34
               

               Conread position:
               139-407
               

               Cow position:
               chr1:83946028-83946300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               235, 0
               

               Conread position:
               139-407
               

               Cow position:
               chr1:86113420-86113695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 143
               

               Conread position:
               139-407
               

               Cow position:
               chr1:88652614-88652349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 34
               

               Conread position:
               139-407
               

               Cow position:
               chr1:94226571-94226830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 10
               

               Conread position:
               139-408
               

               Cow position:
               chr1:3323851-3323571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               8, 42
               

               Conread position:
               139-408
               

               Cow position:
               chr1:18936850-18937116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 34
               

               Conread position:
               139-408
               

               Cow position:
               chr1:63596071-63596344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               199
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               95, 45
               

               Conread position:
               139-408
               

               Cow position:
               chr1:77620529-77620263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               208
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               235, 73
               

               Conread position:
               139-408
               

               Cow position:
               chr1:81859243-81859510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               209
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               97, 63
               

               Conread position:
               139-408
               

               Cow position:
               chr1:92963382-92963107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               207
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               8, 86
               

               Conread position:
               139-410
               

               Cow position:
               chr1:39418137-39418403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 13
               

               Conread position:
               139-411
               

               Cow position:
               chr1:87216444-87216183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               199
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               16, 28
               

               Conread position:
               139-413
               

               Cow position:
               chr1:1802124-1801859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 55
               

               Conread position:
               139-413
               

               Cow position:
               chr1:4374354-4374626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 32
               

               Conread position:
               139-413
               

               Cow position:
               chr1:41697043-41696773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 89
               

               Conread position:
               139-413
               

               Cow position:
               chr1:43380040-43380311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 80
               

               Conread position:
               139-413
               

               Cow position:
               chr1:68716994-68717268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               235, 49
               

               Conread position:
               139-413
               

               Cow position:
               chr1:73561664-73561937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 43
               

               Conread position:
               139-413
               

               Cow position:
               chr1:76019711-76019968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               213
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               237, 70
               

               Conread position:
               139-413
               

               Cow position:
               chr1:76222705-76222979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 23
               

               Conread position:
               139-413
               

               Cow position:
               chr1:99614432-99614164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               79, 41
               

               Conread position:
               139-413
               

               Cow position:
               chr1:102266285-102266559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               97, 45
               

               Conread position:
               139-414
               

               Cow position:
               chr1:81355722-81355992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 80
               

               Conread position:
               140-294
               

               Cow position:
               chr1:97696727-97696571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               140-334
               

               Cow position:
               chr1:4414223-4414413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               14, 92
               

               Conread position:
               140-335
               

               Cow position:
               chr1:61385864-61385669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               8, 57
               

               Conread position:
               140-364
               

               Cow position:
               chr1:25886094-25886310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               140-364
               

               Cow position:
               chr1:49839489-49839271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 95
               

               Conread position:
               140-365
               

               Cow position:
               chr1:102784938-102784724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               140-367
               

               Cow position:
               chr1:24597641-24597414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               64, 90
               

               Conread position:
               140-367
               

               Cow position:
               chr1:44506951-44506730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               140-371
               

               Cow position:
               chr1:25281677-25281918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               64, 103
               

               Conread position:
               140-371
               

               Cow position:
               chr1:52995004-52994782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               140-372
               

               Cow position:
               chr1:93528683-93528447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               140-373
               

               Cow position:
               chr1:56635079-56634852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               220, 89
               

               Conread position:
               140-375
               

               Cow position:
               chr1:28567448-28567684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               12, 76
               

               Conread position:
               140-380
               

               Cow position:
               chr1:3776634-3776866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               90, 62
               

               Conread position:
               140-386
               

               Cow position:
               chr1:71119502-71119252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               19, 75
               

               Conread position:
               140-388
               

               Cow position:
               chr1:12871027-12871267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               17, 30
               

               Conread position:
               140-388
               

               Cow position:
               chr1:57264010-57264246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               189
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               8, 91
               

               Conread position:
               140-397
               

               Cow position:
               chr1:98551700-98551448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 97
               

               Conread position:
               140-398
               

               Cow position:
               chr1:1956350-1956600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               205, 64
               

               Conread position:
               140-398
               

               Cow position:
               chr1:27495469-27495226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               237, 59
               

               Conread position:
               140-398
               

               Cow position:
               chr1:40600025-40599782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               7, 32
               

               Conread position:
               140-398
               

               Cow position:
               chr1:53495450-53495192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 28
               

               Conread position:
               140-398
               

               Cow position:
               chr1:77099567-77099810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               209, 53
               

               Conread position:
               140-399
               

               Cow position:
               chr1:30236238-30236498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               150, 126
               

               Conread position:
               140-407
               

               Cow position:
               chr1:9443865-9444122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               60, 86
               

               Conread position:
               140-407
               

               Cow position:
               chr1:28277633-28277368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               176, 23
               

               Conread position:
               140-407
               

               Cow position:
               chr1:52039617-52039355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 53
               

               Conread position:
               140-407
               

               Cow position:
               chr1:55163899-55163643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               236, 62
               

               Conread position:
               140-407
               

               Cow position:
               chr1:61176168-61175901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 16
               

               Conread position:
               140-407
               

               Cow position:
               chr1:61391802-61392075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 93
               

               Conread position:
               140-407
               

               Cow position:
               chr1:76420103-76419834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               236, 25
               

               Conread position:
               140-407
               

               Cow position:
               chr1:81613371-81613103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 8
               

               Conread position:
               140-407
               

               Cow position:
               chr1:90604597-90604866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               236, 25
               

               Conread position:
               140-407
               

               Cow position:
               chr1:101714098-101713832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               11, 46
               

               Conread position:
               140-413
               

               Cow position:
               chr1:45288887-45289159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 106
               

               Conread position:
               140-413
               

               Cow position:
               chr1:79444807-79445078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               256, 26
               

               Conread position:
               141-276
               

               Cow position:
               chr1:57420744-57420879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               141-288
               

               Cow position:
               chr1:93554821-93554680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               141-305
               

               Cow position:
               chr1:80631683-80631522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               87, 53
               

               Conread position:
               141-307
               

               Cow position:
               chr1:24445644-24445807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               20, 89
               

               Conread position:
               141-315
               

               Cow position:
               chr1:42398211-42398383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               92, 140
               

               Conread position:
               141-315
               

               Cow position:
               chr1:89083090-89082921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               141-344
               

               Cow position:
               chr1:68996165-68995956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               141-347
               

               Cow position:
               chr1:16962025-16962232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               141-357
               

               Cow position:
               chr1:4691580-4691364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               19, 159
               

               Conread position:
               141-363
               

               Cow position:
               chr1:27145666-27145887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               28, 97
               

               Conread position:
               141-372
               

               Cow position:
               chr1:3962713-3962927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               141-373
               

               Cow position:
               chr1:10655466-10655233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               93, 15
               

               Conread position:
               141-375
               

               Cow position:
               chr1:3137912-3137687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               92, 150
               

               Conread position:
               141-375
               

               Cow position:
               chr1:7142865-7143095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               81, 87
               

               Conread position:
               141-375
               

               Cow position:
               chr1:68618950-68619183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 186
               

               Conread position:
               141-380
               

               Cow position:
               chr1:85162567-85162799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               233, 63
               

               Conread position:
               141-386
               

               Cow position:
               chr1:73584429-73584660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               235, 20
               

               Conread position:
               141-388
               

               Cow position:
               chr1:63905489-63905732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               141-389
               

               Cow position:
               chr1:96478679-96478435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 15
               

               Conread position:
               141-397
               

               Cow position:
               chr1:99609352-99609098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 128
               

               Conread position:
               141-398
               

               Cow position:
               chr1:13548001-13548260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               98, 66
               

               Conread position:
               141-398
               

               Cow position:
               chr1:70297258-70296998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               92, 15
               

               Conread position:
               141-398
               

               Cow position:
               chr1:73545925-73546185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               96, 49
               

               Conread position:
               141-398
               

               Cow position:
               chr1:73960688-73960430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 96
               

               Conread position:
               141-398
               

               Cow position:
               chr1:96964303-96964049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 102
               

               Conread position:
               141-399
               

               Cow position:
               chr1:22262356-22262098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               233, 12
               

               Conread position:
               141-399
               

               Cow position:
               chr1:42968334-42968585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 19
               

               Conread position:
               141-401
               

               Cow position:
               chr1:1403500-1403743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               233, 19
               

               Conread position:
               141-401
               

               Cow position:
               chr1:53374414-53374162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 113
               

               Conread position:
               141-405
               

               Cow position:
               chr1:63390787-63391049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 149
               

               Conread position:
               141-405
               

               Cow position:
               chr1:96184035-96184284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               233, 88
               

               Conread position:
               141-406
               

               Cow position:
               chr1:82861761-82861492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 19
               

               Conread position:
               141-407
               

               Cow position:
               chr1:26721079-26721349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               233, 0
               

               Conread position:
               141-407
               

               Cow position:
               chr1:67008761-67009011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               235, 31
               

               Conread position:
               141-407
               

               Cow position:
               chr1:76207269-76207539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               233, 0
               

               Conread position:
               141-407
               

               Cow position:
               chr1:82406569-82406838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               13, 69
               

               Conread position:
               141-407
               

               Cow position:
               chr1:88562319-88562586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               10, 149
               

               Conread position:
               141-407
               

               Cow position:
               chr1:91816791-91817053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 15
               

               Conread position:
               141-408
               

               Cow position:
               chr1:60907357-60907078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               205
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               141-410
               

               Cow position:
               chr1:47009012-47008747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               218, 20
               

               Conread position:
               141-414
               

               Cow position:
               chr1:1878013-1877737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 61
               

               Conread position:
               142-346
               

               Cow position:
               chr1:47883833-47884051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               142-348
               

               Cow position:
               chr1:98461269-98461071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               18, 32
               

               Conread position:
               142-352
               

               Cow position:
               chr1:71953060-71952864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               19, 62
               

               Conread position:
               142-357
               

               Cow position:
               chr1:44125665-44125869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               208, 95
               

               Conread position:
               142-360
               

               Cow position:
               chr1:31348459-31348672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               142-362
               

               Cow position:
               chr1:53410933-53411143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               9, 45
               

               Conread position:
               142-366
               

               Cow position:
               chr1:100512580-100512359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               175
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               94, 13
               

               Conread position:
               142-367
               

               Cow position:
               chr1:71078976-71079191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               142-385
               

               Cow position:
               chr1:61284033-61283769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               88, 233
               

               Conread position:
               142-388
               

               Cow position:
               chr1:23099881-23099637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               76, 99
               

               Conread position:
               142-389
               

               Cow position:
               chr1:84116378-84116141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               234, 42
               

               Conread position:
               142-389
               

               Cow position:
               chr1:93505262-93505013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               153, 216
               

               Conread position:
               142-394
               

               Cow position:
               chr1:38278050-38278313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               42, 22
               

               Conread position:
               142-396
               

               Cow position:
               chr1:32341227-32341475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               234, 65
               

               Conread position:
               142-397
               

               Cow position:
               chr1:63434824-63435072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 99
               

               Conread position:
               142-398
               

               Cow position:
               chr1:26895846-26896095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               98, 7
               

               Conread position:
               142-398
               

               Cow position:
               chr1:52329547-52329798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 19
               

               Conread position:
               142-398
               

               Cow position:
               chr1:71946391-71946640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               11, 97
               

               Conread position:
               142-398
               

               Cow position:
               chr1:81228360-81228601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 43
               

               Conread position:
               142-398
               

               Cow position:
               chr1:101007637-101007885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               19, 126
               

               Conread position:
               142-405
               

               Cow position:
               chr1:23633929-23634177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 60
               

               Conread position:
               142-406
               

               Cow position:
               chr1:8349335-8349590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 42
               

               Conread position:
               142-406
               

               Cow position:
               chr1:40249164-40248892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               142-406
               

               Cow position:
               chr1:53308413-53308673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               96, 22
               

               Conread position:
               142-406
               

               Cow position:
               chr1:63240930-63240671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               197
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               55, 21
               

               Conread position:
               142-407
               

               Cow position:
               chr1:4027849-4027579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 45
               

               Conread position:
               142-407
               

               Cow position:
               chr1:15308015-15307755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               39, 69
               

               Conread position:
               142-407
               

               Cow position:
               chr1:25383644-25383380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               76, 12
               

               Conread position:
               142-407
               

               Cow position:
               chr1:30034516-30034267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               203
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               97, 60
               

               Conread position:
               142-407
               

               Cow position:
               chr1:33811909-33811652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 30
               

               Conread position:
               142-407
               

               Cow position:
               chr1:43285223-43285489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               65, 43
               

               Conread position:
               142-407
               

               Cow position:
               chr1:43352676-43352931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               208
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               68, 87
               

               Conread position:
               142-408
               

               Cow position:
               chr1:5409632-5409894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               230, 118
               

               Conread position:
               142-408
               

               Cow position:
               chr1:83082984-83082722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               92, 26
               

               Conread position:
               142-413
               

               Cow position:
               chr1:81290485-81290233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               234, 40
               

               Conread position:
               142-413
               

               Cow position:
               chr1:100400216-100400486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 20
               

               Conread position:
               142-419
               

               Cow position:
               chr1:89342013-89342281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               271, 87
               

               Conread position:
               143-367
               

               Cow position:
               chr1:99208693-99208911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               207, 50
               

               Conread position:
               143-375
               

               Cow position:
               chr1:83582953-83583186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               17, 44
               

               Conread position:
               143-378
               

               Cow position:
               chr1:4294036-4293815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               143-379
               

               Cow position:
               chr1:37706993-37707220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               106, 61
               

               Conread position:
               143-381
               

               Cow position:
               chr1:39427021-39427234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               233, 77
               

               Conread position:
               143-383
               

               Cow position:
               chr1:55135814-55135582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               182
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               10, 71
               

               Conread position:
               143-389
               

               Cow position:
               chr1:28176989-28176739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               87, 13
               

               Conread position:
               143-398
               

               Cow position:
               chr1:20000771-20001022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               233, 48
               

               Conread position:
               143-406
               

               Cow position:
               chr1:32631442-32631192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               201
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               96, 38
               

               Conread position:
               143-407
               

               Cow position:
               chr1:76879277-76879010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               63, 10
               

               Conread position:
               143-407
               

               Cow position:
               chr1:79001959-79002235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               38, 131
               

               Conread position:
               143-407
               

               Cow position:
               chr1:80870096-80869824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               197
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               119, 94
               

               Conread position:
               143-413
               

               Cow position:
               chr1:29626931-29627203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 78
               

               Conread position:
               143-413
               

               Cow position:
               chr1:41181825-41181553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               207
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               108, 18
               

               Conread position:
               143-414
               

               Cow position:
               chr1:95499511-95499784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               205
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               8, 71
               

               Conread position:
               144-316
               

               Cow position:
               chr1:13810631-13810461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               89, 65
               

               Conread position:
               144-330
               

               Cow position:
               chr1:43340633-43340824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               154
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               91, 17
               

               Conread position:
               144-346
               

               Cow position:
               chr1:26178834-26179032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               90, 17
               

               Conread position:
               144-360
               

               Cow position:
               chr1:43447851-43448055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               50, 93
               

               Conread position:
               144-362
               

               Cow position:
               chr1:10942118-10942325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               95, 58
               

               Conread position:
               144-362
               

               Cow position:
               chr1:10964268-10964061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               95, 58
               

               Conread position:
               144-375
               

               Cow position:
               chr1:71253574-71253801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               144-380
               

               Cow position:
               chr1:11770312-11770545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 28
               

               Conread position:
               144-385
               

               Cow position:
               chr1:100551950-100551713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               15, 121
               

               Conread position:
               144-389
               

               Cow position:
               chr1:83747919-83747682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               119, 29
               

               Conread position:
               144-397
               

               Cow position:
               chr1:49433280-49433535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               13, 67
               

               Conread position:
               144-397
               

               Cow position:
               chr1:102756449-102756690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               231, 112
               

               Conread position:
               144-398
               

               Cow position:
               chr1:90868461-90868708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               232, 86
               

               Conread position:
               144-407
               

               Cow position:
               chr1:24235539-24235800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               199
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               232, 24
               

               Conread position:
               144-407
               

               Cow position:
               chr1:100770769-100771016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               105, 119
               

               Conread position:
               144-408
               

               Cow position:
               chr1:12222623-12222888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               16, 144
               

               Conread position:
               144-413
               

               Cow position:
               chr1:31934491-31934225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 10
               

               Conread position:
               144-413
               

               Cow position:
               chr1:79663689-79663952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 41
               

               Conread position:
               144-419
               

               Cow position:
               chr1:68845507-68845772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 28
               

               Conread position:
               145-276
               

               Cow position:
               chr1:65909507-65909375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               145-408
               

               Cow position:
               chr1:68217385-68217643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 61
               

               Conread position:
               148-301
               

               Cow position:
               chr1:24876237-24876093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               82, 55
               

               Conread position:
               148-313
               

               Cow position:
               chr1:74319806-74319969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               148-375
               

               Cow position:
               chr1:102468990-102469211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               204, 38
               

               Conread position:
               148-384
               

               Cow position:
               chr1:102825842-102826069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               229, 46
               

               Conread position:
               148-388
               

               Cow position:
               chr1:74084219-74084449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               90, 129
               

               Conread position:
               148-398
               

               Cow position:
               chr1:31341073-31341324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               226, 0
               

               Conread position:
               148-407
               

               Cow position:
               chr1:46939882-46940141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 55
               

               Conread position:
               148-407
               

               Cow position:
               chr1:61005583-61005844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               59, 20
               

               Conread position:
               148-413
               

               Cow position:
               chr1:78030498-78030767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               30, 133
               

               Conread position:
               149-287
               

               Cow position:
               chr1:95922403-95922541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               149-313
               

               Cow position:
               chr1:68763709-68763866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               149-347
               

               Cow position:
               chr1:11729156-11728959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               149-360
               

               Cow position:
               chr1:54162832-54163041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               61, 79
               

               Conread position:
               149-373
               

               Cow position:
               chr1:3035017-3035237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               12, 90
               

               Conread position:
               149-375
               

               Cow position:
               chr1:71136124-71135907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               163, 61
               

               Conread position:
               149-381
               

               Cow position:
               chr1:14379559-14379783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               11, 80
               

               Conread position:
               149-382
               

               Cow position:
               chr1:62920139-62919923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               67, 58
               

               Conread position:
               149-385
               

               Cow position:
               chr1:58419912-58419677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               228, 0
               

               Conread position:
               149-388
               

               Cow position:
               chr1:81868753-81868987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               190, 36
               

               Conread position:
               149-398
               

               Cow position:
               chr1:4589500-4589751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               145, 12
               

               Conread position:
               149-398
               

               Cow position:
               chr1:11659620-11659373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               200, 103
               

               Conread position:
               149-398
               

               Cow position:
               chr1:22729026-22728778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 79
               

               Conread position:
               149-398
               

               Cow position:
               chr1:71748036-71748277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 15
               

               Conread position:
               149-398
               

               Cow position:
               chr1:79844441-79844199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               46, 80
               

               Conread position:
               149-401
               

               Cow position:
               chr1:6939663-6939912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               225, 75
               

               Conread position:
               149-401
               

               Cow position:
               chr1:72181800-72181561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               228, 31
               

               Conread position:
               149-402
               

               Cow position:
               chr1:84240867-84240625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 68
               

               Conread position:
               149-405
               

               Cow position:
               chr1:98613209-98612965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               242, 44
               

               Conread position:
               149-406
               

               Cow position:
               chr1:100421807-100421565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               227, 81
               

               Conread position:
               149-407
               

               Cow position:
               chr1:48730853-48731106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 47
               

               Conread position:
               149-407
               

               Cow position:
               chr1:65529925-65530186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               37, 16
               

               Conread position:
               149-407
               

               Cow position:
               chr1:70282910-70282659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               68, 12
               

               Conread position:
               149-407
               

               Cow position:
               chr1:77720260-77720509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               247, 88
               

               Conread position:
               149-407
               

               Cow position:
               chr1:101822527-101822778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               200
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               89, 36
               

               Conread position:
               149-408
               

               Cow position:
               chr1:83982396-83982659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 12
               

               Conread position:
               149-408
               

               Cow position:
               chr1:92370385-92370642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 12
               

               Conread position:
               149-413
               

               Cow position:
               chr1:11772101-11772369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 14
               

               Conread position:
               149-413
               

               Cow position:
               chr1:15311844-15311580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 65
               

               Conread position:
               149-413
               

               Cow position:
               chr1:66138296-66138032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               192
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               11, 113
               

               Conread position:
               149-413
               

               Cow position:
               chr1:79591082-79590812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               149-413
               

               Cow position:
               chr1:81472848-81472591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               191
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               224, 111
               

               Conread position:
               149-413
               

               Cow position:
               chr1:85361835-85361567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 49
               

               Conread position:
               149-413
               

               Cow position:
               chr1:95215206-95215466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 235
               

               Conread position:
               150-285
               

               Cow position:
               chr1:51684775-51684643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               150-347
               

               Cow position:
               chr1:98557810-98558002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               88, 51
               

               Conread position:
               150-373
               

               Cow position:
               chr1:53671767-53671993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               111, 85
               

               Conread position:
               150-385
               

               Cow position:
               chr1:50634427-50634663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               74, 64
               

               Conread position:
               150-388
               

               Cow position:
               chr1:68817825-68818056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               226, 79
               

               Conread position:
               150-389
               

               Cow position:
               chr1:48581105-48580869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               206, 110
               

               Conread position:
               150-389
               

               Cow position:
               chr1:69540273-69540022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               113, 38
               

               Conread position:
               150-389
               

               Cow position:
               chr1:102425675-102425436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               196, 13
               

               Conread position:
               150-398
               

               Cow position:
               chr1:49795974-49795730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               210, 42
               

               Conread position:
               150-398
               

               Cow position:
               chr1:72115584-72115342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               226, 102
               

               Conread position:
               150-400
               

               Cow position:
               chr1:61741996-61742240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               68, 48
               

               Conread position:
               150-407
               

               Cow position:
               chr1:57760336-57760076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               226, 199
               

               Conread position:
               150-407
               

               Cow position:
               chr1:85151207-85151461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               226, 124
               

               Conread position:
               150-413
               

               Cow position:
               chr1:60032624-60032886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 136
               

               Conread position:
               152-375
               

               Cow position:
               chr1:10633018-10632807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               152-375
               

               Cow position:
               chr1:81563708-81563487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               153-277
               

               Cow position:
               chr1:41115744-41115867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               153-288
               

               Cow position:
               chr1:77683328-77683194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               153-291
               

               Cow position:
               chr1:95558007-95557870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               153-301
               

               Cow position:
               chr1:20544265-20544119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               153-308
               

               Cow position:
               chr1:20667771-20667921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               153-313
               

               Cow position:
               chr1:86578930-86578764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               25, 86
               

               Conread position:
               153-316
               

               Cow position:
               chr1:56674156-56674317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               153-322
               

               Cow position:
               chr1:69004365-69004199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 30
               

               Conread position:
               153-326
               

               Cow position:
               chr1:43872360-43872532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               153-328
               

               Cow position:
               chr1:81471103-81470929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               153-329
               

               Cow position:
               chr1:94261509-94261347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               153-331
               

               Cow position:
               chr1:28563602-28563771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               85, 32
               

               Conread position:
               153-331
               

               Cow position:
               chr1:46030385-46030555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               153-344
               

               Cow position:
               chr1:74956050-74956239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               151
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               153-348
               

               Cow position:
               chr1:6304892-6305088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               154
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               153-348
               

               Cow position:
               chr1:52956224-52956040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               153-348
               

               Cow position:
               chr1:93043990-93043806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               153-354
               

               Cow position:
               chr1:69415742-69415943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               71, 61
               

               Conread position:
               153-358
               

               Cow position:
               chr1:55705279-55705483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               153-358
               

               Cow position:
               chr1:98348345-98348535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               153-359
               

               Cow position:
               chr1:64804134-64804338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               85, 24
               

               Conread position:
               153-360
               

               Cow position:
               chr1:73761388-73761583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               153-360
               

               Cow position:
               chr1:78809851-78809652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               162
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               153-367
               

               Cow position:
               chr1:40531142-40531347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               76, 110
               

               Conread position:
               153-367
               

               Cow position:
               chr1:51836541-51836333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               79, 51
               

               Conread position:
               153-367
               

               Cow position:
               chr1:95057024-95056817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               153-369
               

               Cow position:
               chr1:64189468-64189262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               165, 54
               

               Conread position:
               153-373
               

               Cow position:
               chr1:56477558-56477351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               153-373
               

               Cow position:
               chr1:56643619-56643833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               153-374
               

               Cow position:
               chr1:84239142-84239352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               153-375
               

               Cow position:
               chr1:25793464-25793686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               189, 57
               

               Conread position:
               153-375
               

               Cow position:
               chr1:68951598-68951386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               153-376
               

               Cow position:
               chr1:8869692-8869912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               135, 62
               

               Conread position:
               153-378
               

               Cow position:
               chr1:50931006-50931218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               153-382
               

               Cow position:
               chr1:49131145-49131376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               153-384
               

               Cow position:
               chr1:19998071-19998291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               221, 10
               

               Conread position:
               153-386
               

               Cow position:
               chr1:3923826-3924051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               220, 19
               

               Conread position:
               153-386
               

               Cow position:
               chr1:42555235-42555012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               10, 108
               

               Conread position:
               153-387
               

               Cow position:
               chr1:19144954-19145177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               222, 49
               

               Conread position:
               153-387
               

               Cow position:
               chr1:76470626-76470400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               182
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               76, 127
               

               Conread position:
               153-387
               

               Cow position:
               chr1:85783495-85783267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               79, 40
               

               Conread position:
               153-387
               

               Cow position:
               chr1:93110650-93110882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               57, 75
               

               Conread position:
               153-388
               

               Cow position:
               chr1:37309547-37309764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               224, 24
               

               Conread position:
               153-388
               

               Cow position:
               chr1:80973635-80973874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               61, 133
               

               Conread position:
               153-389
               

               Cow position:
               chr1:21787301-21787065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               175
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               223, 84
               

               Conread position:
               153-390
               

               Cow position:
               chr1:52506584-52506806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               223, 54
               

               Conread position:
               153-390
               

               Cow position:
               chr1:90423113-90423348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               221, 61
               

               Conread position:
               153-394
               

               Cow position:
               chr1:80764567-80764802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               223, 64
               

               Conread position:
               153-395
               

               Cow position:
               chr1:51394388-51394151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               14, 51
               

               Conread position:
               153-396
               

               Cow position:
               chr1:16855726-16855956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               223, 49
               

               Conread position:
               153-397
               

               Cow position:
               chr1:1981144-1981381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               221, 54
               

               Conread position:
               153-397
               

               Cow position:
               chr1:22730711-22730493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               153-398
               

               Cow position:
               chr1:3751968-3752213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               75, 47
               

               Conread position:
               153-398
               

               Cow position:
               chr1:10778536-10778304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               192
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               223, 20
               

               Conread position:
               153-398
               

               Cow position:
               chr1:45007435-45007196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 49
               

               Conread position:
               153-398
               

               Cow position:
               chr1:66430268-66430031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 28
               

               Conread position:
               153-398
               

               Cow position:
               chr1:91142185-91142425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               221, 19
               

               Conread position:
               153-398
               

               Cow position:
               chr1:94212201-94211964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 19
               

               Conread position:
               153-398
               

               Cow position:
               chr1:95176906-95176665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 40
               

               Conread position:
               153-399
               

               Cow position:
               chr1:89509953-89510203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               99, 20
               

               Conread position:
               153-399
               

               Cow position:
               chr1:98360429-98360685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               192
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               85, 19
               

               Conread position:
               153-405
               

               Cow position:
               chr1:12595933-12596184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               223, 76
               

               Conread position:
               153-405
               

               Cow position:
               chr1:22467903-22467652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 19
               

               Conread position:
               153-405
               

               Cow position:
               chr1:32630944-32630691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               221, 125
               

               Conread position:
               153-405
               

               Cow position:
               chr1:41735653-41735902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               223, 61
               

               Conread position:
               153-407
               

               Cow position:
               chr1:15547442-15547187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 24
               

               Conread position:
               153-407
               

               Cow position:
               chr1:23669560-23669814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               136, 10
               

               Conread position:
               153-407
               

               Cow position:
               chr1:26688504-26688760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               223, 84
               

               Conread position:
               153-407
               

               Cow position:
               chr1:34159806-34159553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 19
               

               Conread position:
               153-407
               

               Cow position:
               chr1:35162380-35162122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 207
               

               Conread position:
               153-407
               

               Cow position:
               chr1:36874984-36874736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 68
               

               Conread position:
               153-407
               

               Cow position:
               chr1:36998162-36997915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               196
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               77, 29
               

               Conread position:
               153-407
               

               Cow position:
               chr1:44165053-44164798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               222, 84
               

               Conread position:
               153-407
               

               Cow position:
               chr1:53520883-53520630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               195
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               47, 140
               

               Conread position:
               153-407
               

               Cow position:
               chr1:55357314-55357562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               153-407
               

               Cow position:
               chr1:57573351-57573608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               84, 137
               

               Conread position:
               153-407
               

               Cow position:
               chr1:66355745-66355991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               223, 54
               

               Conread position:
               153-407
               

               Cow position:
               chr1:85596912-85596664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               201
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               82, 105
               

               Conread position:
               153-407
               

               Cow position:
               chr1:95100928-95100684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               223, 31
               

               Conread position:
               153-408
               

               Cow position:
               chr1:31845997-31845752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               80, 40
               

               Conread position:
               153-408
               

               Cow position:
               chr1:91039204-91039442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               81, 49
               

               Conread position:
               153-408
               

               Cow position:
               chr1:94875704-94875961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 97
               

               Conread position:
               153-410
               

               Cow position:
               chr1:6794954-6795217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               46, 74
               

               Conread position:
               153-413
               

               Cow position:
               chr1:731971-732213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               221, 37
               

               Conread position:
               153-413
               

               Cow position:
               chr1:69940996-69941253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 110
               

               Conread position:
               153-413
               

               Cow position:
               chr1:98380601-98380865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               195
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               46, 107
               

               Conread position:
               153-413
               

               Cow position:
               chr1:101551426-101551169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               200
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               85, 39
               

               Conread position:
               153-414
               

               Cow position:
               chr1:90641002-90640736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 208
               

               Conread position:
               153-419
               

               Cow position:
               chr1:74940171-74939907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               190, 173
               

               Conread position:
               154-398
               

               Cow position:
               chr1:33720088-33719844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 27
               

               Conread position:
               155-329
               

               Cow position:
               chr1:49753897-49753730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               155-337
               

               Cow position:
               chr1:98372602-98372420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               86, 35
               

               Conread position:
               155-353
               

               Cow position:
               chr1:96472414-96472205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               106, 74
               

               Conread position:
               156-285
               

               Cow position:
               chr1:97938937-97938809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               82, 109
               

               Conread position:
               156-302
               

               Cow position:
               chr1:51435626-51435770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               78, 58
               

               Conread position:
               156-305
               

               Cow position:
               chr1:11832800-11832944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               156-313
               

               Cow position:
               chr1:3243907-3243754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               5, 114
               

               Conread position:
               156-316
               

               Cow position:
               chr1:32001352-32001508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               9, 105
               

               Conread position:
               156-316
               

               Cow position:
               chr1:54156766-54156928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               74, 19
               

               Conread position:
               156-328
               

               Cow position:
               chr1:24542614-24542781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               156-330
               

               Cow position:
               chr1:89437970-89438137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               34, 13
               

               Conread position:
               156-333
               

               Cow position:
               chr1:68862999-68862831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               49, 13
               

               Conread position:
               156-333
               

               Cow position:
               chr1:90976117-90976287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               74, 124
               

               Conread position:
               156-333
               

               Cow position:
               chr1:98619179-98619002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               77, 48
               

               Conread position:
               156-343
               

               Cow position:
               chr1:19885349-19885170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               153
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               156-347
               

               Cow position:
               chr1:98311036-98310842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               156-373
               

               Cow position:
               chr1:19466024-19465818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               156-374
               

               Cow position:
               chr1:75967399-75967191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               156-375
               

               Cow position:
               chr1:98708408-98708196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               168
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               156-382
               

               Cow position:
               chr1:21835911-21835694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               220, 28
               

               Conread position:
               156-383
               

               Cow position:
               chr1:24655929-24655705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 21
               

               Conread position:
               156-386
               

               Cow position:
               chr1:16767115-16767343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               221, 72
               

               Conread position:
               156-386
               

               Cow position:
               chr1:46693688-46693914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               78, 34
               

               Conread position:
               156-388
               

               Cow position:
               chr1:6941431-6941206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 75
               

               Conread position:
               156-388
               

               Cow position:
               chr1:6958844-6958619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 75
               

               Conread position:
               156-389
               

               Cow position:
               chr1:3340903-3340677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               178
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               156-389
               

               Cow position:
               chr1:57639549-57639781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               28, 87
               

               Conread position:
               156-389
               

               Cow position:
               chr1:78794774-78794996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               94, 42
               

               Conread position:
               156-391
               

               Cow position:
               chr1:47658314-47658092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               220, 20
               

               Conread position:
               156-394
               

               Cow position:
               chr1:33702086-33701853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               220, 25
               

               Conread position:
               156-395
               

               Cow position:
               chr1:45019840-45020070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               155, 65
               

               Conread position:
               156-396
               

               Cow position:
               chr1:61724054-61724293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               82, 94
               

               Conread position:
               156-398
               

               Cow position:
               chr1:11873394-11873625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               220, 29
               

               Conread position:
               156-398
               

               Cow position:
               chr1:20204995-20204755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 14
               

               Conread position:
               156-398
               

               Cow position:
               chr1:22745592-22745357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               221, 95
               

               Conread position:
               156-398
               

               Cow position:
               chr1:92437028-92437261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               79, 42
               

               Conread position:
               156-398
               

               Cow position:
               chr1:93499591-93499352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 25
               

               Conread position:
               156-399
               

               Cow position:
               chr1:99637811-99638051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               220, 30
               

               Conread position:
               156-399
               

               Cow position:
               chr1:101547065-101547313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               72, 195
               

               Conread position:
               156-399
               

               Cow position:
               chr1:102647304-102647540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 111
               

               Conread position:
               156-407
               

               Cow position:
               chr1:8532245-8532496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               191
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               12, 108
               

               Conread position:
               156-407
               

               Cow position:
               chr1:54258530-54258290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 37
               

               Conread position:
               156-407
               

               Cow position:
               chr1:57575792-57576044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               109, 17
               

               Conread position:
               156-407
               

               Cow position:
               chr1:68282771-68282512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               156-407
               

               Cow position:
               chr1:69264778-69264540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               199
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               221, 28
               

               Conread position:
               156-407
               

               Cow position:
               chr1:69539665-69539415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               220, 73
               

               Conread position:
               156-407
               

               Cow position:
               chr1:74822417-74822168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               218, 46
               

               Conread position:
               156-408
               

               Cow position:
               chr1:8584-8339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               220, 37
               

               Conread position:
               156-408
               

               Cow position:
               chr1:95687135-95687384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               220, 37
               

               Conread position:
               156-413
               

               Cow position:
               chr1:7350510-7350250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 12
               

               Conread position:
               156-413
               

               Cow position:
               chr1:34300582-34300836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 72
               

               Conread position:
               156-413
               

               Cow position:
               chr1:81180004-81180273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               156-413
               

               Cow position:
               chr1:81913187-81913437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 48
               

               Conread position:
               156-413
               

               Cow position:
               chr1:82884422-82884673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 81
               

               Conread position:
               156-413
               

               Cow position:
               chr1:84283042-84282773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               156-413
               

               Cow position:
               chr1:87888368-87888118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 94
               

               Conread position:
               157-288
               

               Cow position:
               chr1:25387020-25386888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               76, 114
               

               Conread position:
               157-293
               

               Cow position:
               chr1:87095263-87095399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               157-316
               

               Cow position:
               chr1:61742493-61742651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               115
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               157-351
               

               Cow position:
               chr1:49317529-49317735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               157-351
               

               Cow position:
               chr1:55194497-55194686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               59, 84
               

               Conread position:
               157-361
               

               Cow position:
               chr1:95050127-95050332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               157-366
               

               Cow position:
               chr1:71818491-71818699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               157-370
               

               Cow position:
               chr1:20288085-20287876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               157-373
               

               Cow position:
               chr1:51445846-51445635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               157-382
               

               Cow position:
               chr1:42360241-42360012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               84, 24
               

               Conread position:
               157-388
               

               Cow position:
               chr1:7713927-7713700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               219, 50
               

               Conread position:
               157-389
               

               Cow position:
               chr1:20799852-20799613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               73, 60
               

               Conread position:
               157-389
               

               Cow position:
               chr1:53370048-53369809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               79, 41
               

               Conread position:
               157-389
               

               Cow position:
               chr1:55146769-55146542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               157-389
               

               Cow position:
               chr1:95327184-95327414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 45
               

               Conread position:
               157-395
               

               Cow position:
               chr1:56711652-56711883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 112
               

               Conread position:
               157-398
               

               Cow position:
               chr1:23969071-23969305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               73, 20
               

               Conread position:
               157-398
               

               Cow position:
               chr1:43211732-43211508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               197, 47
               

               Conread position:
               157-398
               

               Cow position:
               chr1:44769145-44769379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 81
               

               Conread position:
               157-398
               

               Cow position:
               chr1:53595287-53595055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               188
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               77, 57
               

               Conread position:
               157-401
               

               Cow position:
               chr1:1165567-1165329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               203, 52
               

               Conread position:
               157-401
               

               Cow position:
               chr1:99642399-99642643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               142, 80
               

               Conread position:
               157-407
               

               Cow position:
               chr1:1991455-1991712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 50
               

               Conread position:
               157-407
               

               Cow position:
               chr1:21460836-21460588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               69, 110
               

               Conread position:
               157-407
               

               Cow position:
               chr1:91066186-91066430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               219, 72
               

               Conread position:
               157-407
               

               Cow position:
               chr1:100706100-100705852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               73, 107
               

               Conread position:
               157-413
               

               Cow position:
               chr1:20125581-20125323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               196
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               25, 99
               

               Conread position:
               157-413
               

               Cow position:
               chr1:42053366-42053613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               92, 43
               

               Conread position:
               157-413
               

               Cow position:
               chr1:54199415-54199668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 131
               

               Conread position:
               158-281
               

               Cow position:
               chr1:42545820-42545940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               158-379
               

               Cow position:
               chr1:89395567-89395340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               158-380
               

               Cow position:
               chr1:81363956-81363742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               25, 111
               

               Conread position:
               158-384
               

               Cow position:
               chr1:97806754-97806536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 79
               

               Conread position:
               158-388
               

               Cow position:
               chr1:64251088-64251309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               216, 30
               

               Conread position:
               158-389
               

               Cow position:
               chr1:41252441-41252664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               181
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               123, 27
               

               Conread position:
               158-398
               

               Cow position:
               chr1:67616491-67616266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               218, 35
               

               Conread position:
               158-407
               

               Cow position:
               chr1:69695026-69695288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               158-413
               

               Cow position:
               chr1:72034958-72035217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 170
               

               Conread position:
               159-307
               

               Cow position:
               chr1:7748185-7748034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               159-307
               

               Cow position:
               chr1:7752351-7752200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               159-316
               

               Cow position:
               chr1:83593838-83593995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               75, 134
               

               Conread position:
               159-335
               

               Cow position:
               chr1:70094307-70094131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               159-355
               

               Cow position:
               chr1:78154759-78154951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               159-364
               

               Cow position:
               chr1:69678364-69678561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               159-375
               

               Cow position:
               chr1:10115830-10116042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               79, 27
               

               Conread position:
               159-381
               

               Cow position:
               chr1:6102947-6103166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               217, 159
               

               Conread position:
               159-382
               

               Cow position:
               chr1:57395965-57396183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               82, 105
               

               Conread position:
               159-383
               

               Cow position:
               chr1:37646038-37646256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               23, 80
               

               Conread position:
               159-383
               

               Cow position:
               chr1:70380179-70380401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               26, 80
               

               Conread position:
               159-384
               

               Cow position:
               chr1:46839566-46839338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               159-387
               

               Cow position:
               chr1:97820652-97820426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               217, 34
               

               Conread position:
               159-388
               

               Cow position:
               chr1:5162084-5162313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               51, 81
               

               Conread position:
               159-388
               

               Cow position:
               chr1:74947158-74947377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               215, 78
               

               Conread position:
               159-389
               

               Cow position:
               chr1:43505489-43505262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               170
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               217, 78
               

               Conread position:
               159-389
               

               Cow position:
               chr1:78196159-78195930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               37, 122
               

               Conread position:
               159-398
               

               Cow position:
               chr1:42887302-42887531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               159-398
               

               Cow position:
               chr1:53397950-53397714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               195, 45
               

               Conread position:
               159-399
               

               Cow position:
               chr1:68912704-68912484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               217, 33
               

               Conread position:
               159-407
               

               Cow position:
               chr1:48444229-48444460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               217, 80
               

               Conread position:
               159-407
               

               Cow position:
               chr1:51968425-51968188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               180, 70
               

               Conread position:
               159-407
               

               Cow position:
               chr1:85028917-85028679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               217, 45
               

               Conread position:
               159-408
               

               Cow position:
               chr1:21508356-21508108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               75, 50
               

               Conread position:
               159-408
               

               Cow position:
               chr1:46886057-46885811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               217, 50
               

               Conread position:
               159-413
               

               Cow position:
               chr1:21573018-21572755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               159-413
               

               Cow position:
               chr1:33331123-33331358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               216, 61
               

               Conread position:
               159-413
               

               Cow position:
               chr1:61351110-61350865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               215, 34
               

               Conread position:
               160-288
               

               Cow position:
               chr1:38753884-38753754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               104
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               160-295
               

               Cow position:
               chr1:32596422-32596283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               160-304
               

               Cow position:
               chr1:31607931-31608074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               77, 105
               

               Conread position:
               160-327
               

               Cow position:
               chr1:18697383-18697551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               73, 12
               

               Conread position:
               160-348
               

               Cow position:
               chr1:98030878-98030695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               160-353
               

               Cow position:
               chr1:5061991-5061797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               62, 68
               

               Conread position:
               160-356
               

               Cow position:
               chr1:26201183-26200993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               160-358
               

               Cow position:
               chr1:89076665-89076865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               68, 95
               

               Conread position:
               160-366
               

               Cow position:
               chr1:7442947-7442748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               160-367
               

               Cow position:
               chr1:70236324-70236531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               50, 130
               

               Conread position:
               160-373
               

               Cow position:
               chr1:88618559-88618348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               170
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 29
               

               Conread position:
               160-375
               

               Cow position:
               chr1:1185701-1185493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               74, 25
               

               Conread position:
               160-375
               

               Cow position:
               chr1:59650230-59650020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               58, 121
               

               Conread position:
               160-375
               

               Cow position:
               chr1:70538571-70538357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               160-375
               

               Cow position:
               chr1:81319256-81319044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               103, 49
               

               Conread position:
               160-379
               

               Cow position:
               chr1:57637331-57637121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               74, 13
               

               Conread position:
               160-383
               

               Cow position:
               chr1:20002275-20002487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               24, 104
               

               Conread position:
               160-383
               

               Cow position:
               chr1:77658031-77657811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               217, 80
               

               Conread position:
               160-386
               

               Cow position:
               chr1:31871389-31871162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               64, 52
               

               Conread position:
               160-387
               

               Cow position:
               chr1:72011845-72012062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               216, 117
               

               Conread position:
               160-388
               

               Cow position:
               chr1:29975639-29975857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               216, 50
               

               Conread position:
               160-388
               

               Cow position:
               chr1:32244436-32244659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               51, 63
               

               Conread position:
               160-388
               

               Cow position:
               chr1:56408581-56408353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               43, 50
               

               Conread position:
               160-388
               

               Cow position:
               chr1:95765126-95765349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               216, 54
               

               Conread position:
               160-389
               

               Cow position:
               chr1:7657349-7657575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               193, 54
               

               Conread position:
               160-389
               

               Cow position:
               chr1:16972878-16973103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               200, 54
               

               Conread position:
               160-391
               

               Cow position:
               chr1:90864329-90864563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               160-392
               

               Cow position:
               chr1:88971021-88970799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               216, 27
               

               Conread position:
               160-398
               

               Cow position:
               chr1:14528232-14528470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               45, 77
               

               Conread position:
               160-398
               

               Cow position:
               chr1:56229209-56228984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               214, 44
               

               Conread position:
               160-398
               

               Cow position:
               chr1:67014346-67014114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               66, 42
               

               Conread position:
               160-399
               

               Cow position:
               chr1:7800577-7800341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               64, 50
               

               Conread position:
               160-406
               

               Cow position:
               chr1:89835213-89834954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               68, 152
               

               Conread position:
               160-407
               

               Cow position:
               chr1:11226281-11226527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 43
               

               Conread position:
               160-407
               

               Cow position:
               chr1:31399261-31399507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               160-407
               

               Cow position:
               chr1:34000876-34000623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               160-407
               

               Cow position:
               chr1:53622923-53622686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 25
               

               Conread position:
               160-408
               

               Cow position:
               chr1:71257514-71257766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               216, 0
               

               Conread position:
               160-413
               

               Cow position:
               chr1:21577773-21577519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               86, 121
               

               Conread position:
               160-413
               

               Cow position:
               chr1:55260467-55260718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 42
               

               Conread position:
               160-413
               

               Cow position:
               chr1:80988309-80988061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 54
               

               Conread position:
               160-421
               

               Cow position:
               chr1:53039737-53039989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               160-421
               

               Cow position:
               chr1:63504297-63504047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               216, 41
               

               Conread position:
               161-312
               

               Cow position:
               chr1:73682274-73682420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               73, 38
               

               Conread position:
               161-316
               

               Cow position:
               chr1:57880823-57880980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               161-371
               

               Cow position:
               chr1:55229947-55229742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               12, 26
               

               Conread position:
               161-405
               

               Cow position:
               chr1:43839491-43839250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               215, 65
               

               Conread position:
               161-408
               

               Cow position:
               chr1:89937394-89937643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 53
               

               Conread position:
               161-413
               

               Cow position:
               chr1:97755479-97755238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               233, 77
               

               Conread position:
               161-432
               

               Cow position:
               chr1:58889329-58889598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               12, 81
               

               Conread position:
               162-335
               

               Cow position:
               chr1:41954283-41954460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               68, 133
               

               Conread position:
               162-356
               

               Cow position:
               chr1:53540351-53540163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               137, 40
               

               Conread position:
               162-399
               

               Cow position:
               chr1:52435234-52434997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               76, 33
               

               Conread position:
               162-407
               

               Cow position:
               chr1:57524855-57525098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               213, 99
               

               Conread position:
               162-408
               

               Cow position:
               chr1:42256540-42256793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               163-315
               

               Cow position:
               chr1:25734829-25734667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               163-328
               

               Cow position:
               chr1:7450091-7449933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               163-384
               

               Cow position:
               chr1:97619876-97620096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               213, 64
               

               Conread position:
               163-386
               

               Cow position:
               chr1:76850765-76850980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               45, 102
               

               Conread position:
               163-389
               

               Cow position:
               chr1:10064017-10064238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               55, 20
               

               Conread position:
               163-389
               

               Cow position:
               chr1:56073500-56073723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               191, 27
               

               Conread position:
               163-408
               

               Cow position:
               chr1:2075379-2075610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               213, 75
               

               Conread position:
               163-408
               

               Cow position:
               chr1:21093053-21092809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 65
               

               Conread position:
               164-322
               

               Cow position:
               chr1:24413405-24413246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               12, 75
               

               Conread position:
               164-332
               

               Cow position:
               chr1:72103809-72103643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               69, 110
               

               Conread position:
               164-334
               

               Cow position:
               chr1:32013916-32013751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               164-346
               

               Cow position:
               chr1:86484925-86484738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               164-347
               

               Cow position:
               chr1:85867559-85867376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               164-357
               

               Cow position:
               chr1:43358052-43358243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               69, 117
               

               Conread position:
               164-358
               

               Cow position:
               chr1:57155446-57155631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               70, 28
               

               Conread position:
               164-373
               

               Cow position:
               chr1:4573481-4573275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               207, 73
               

               Conread position:
               164-373
               

               Cow position:
               chr1:100450221-100450434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               69, 118
               

               Conread position:
               164-375
               

               Cow position:
               chr1:47233519-47233721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               164-375
               

               Cow position:
               chr1:78857362-78857568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               165
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               164-380
               

               Cow position:
               chr1:61246199-61246403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               212, 75
               

               Conread position:
               164-380
               

               Cow position:
               chr1:95035398-95035606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               70, 32
               

               Conread position:
               164-388
               

               Cow position:
               chr1:51628539-51628762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 45
               

               Conread position:
               164-390
               

               Cow position:
               chr1:50679323-50679547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               69, 109
               

               Conread position:
               164-392
               

               Cow position:
               chr1:60707363-60707139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               70, 38
               

               Conread position:
               164-407
               

               Cow position:
               chr1:92666487-92666733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               210, 114
               

               Conread position:
               164-407
               

               Cow position:
               chr1:99136471-99136712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 73
               

               Conread position:
               164-408
               

               Cow position:
               chr1:27358911-27358658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               164-412
               

               Cow position:
               chr1:635153-634904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 48
               

               Conread position:
               164-413
               

               Cow position:
               chr1:31765427-31765683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 193
               

               Conread position:
               164-413
               

               Cow position:
               chr1:68276374-68276119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 189
               

               Conread position:
               164-413
               

               Cow position:
               chr1:71325288-71325535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 26
               

               Conread position:
               164-420
               

               Cow position:
               chr1:64678655-64678405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 40
               

               Conread position:
               165-365
               

               Cow position:
               chr1:64941340-64941538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               165-413
               

               Cow position:
               chr1:68253550-68253303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               210, 61
               

               Conread position:
               166-370
               

               Cow position:
               chr1:68600560-68600764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               112, 117
               

               Conread position:
               166-372
               

               Cow position:
               chr1:4339149-4338944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               166-374
               

               Cow position:
               chr1:55157847-55158055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               166-375
               

               Cow position:
               chr1:44136508-44136708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               165
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               166-380
               

               Cow position:
               chr1:13977085-13977299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               210, 44
               

               Conread position:
               166-388
               

               Cow position:
               chr1:40089914-40089685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               166-392
               

               Cow position:
               chr1:60546304-60546534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               166-394
               

               Cow position:
               chr1:32092320-32092096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               210, 93
               

               Conread position:
               166-398
               

               Cow position:
               chr1:22630815-22630582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-398
               

               Cow position:
               chr1:44244531-44244764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               167, 179
               

               Conread position:
               166-398
               

               Cow position:
               chr1:71280070-71280303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               123, 112
               

               Conread position:
               166-398
               

               Cow position:
               chr1:82492020-82491787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               187, 0
               

               Conread position:
               166-398
               

               Cow position:
               chr1:82502820-82502589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               208, 129
               

               Conread position:
               166-398
               

               Cow position:
               chr1:86706402-86706170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               210, 147
               

               Conread position:
               166-399
               

               Cow position:
               chr1:6200532-6200298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:6500131-6499897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:10624915-10624681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:13452011-13451778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               208, 58
               

               Conread position:
               166-399
               

               Cow position:
               chr1:17008516-17008751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:17032374-17032607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               171, 112
               

               Conread position:
               166-399
               

               Cow position:
               chr1:17056689-17056455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:17057947-17058181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:17286448-17286682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:17435023-17435257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:19057090-19056858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               210, 174
               

               Conread position:
               166-399
               

               Cow position:
               chr1:20833103-20832869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:21091483-21091249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:25284972-25284738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:31816946-31817180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:47072414-47072648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:56692360-56692594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:59201363-59201596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               210, 154
               

               Conread position:
               166-399
               

               Cow position:
               chr1:60114993-60114759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:68481578-68481345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               208, 142
               

               Conread position:
               166-399
               

               Cow position:
               chr1:73432908-73433142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:75404119-75403885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:79916455-79916689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:81349863-81350098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:84447905-84447671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:85806573-85806807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:86543740-86543974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:87457327-87457093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               189, 174
               

               Conread position:
               166-399
               

               Cow position:
               chr1:88625415-88625181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               14, 21
               

               Conread position:
               166-399
               

               Cow position:
               chr1:89435104-89435338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:89792332-89792566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-399
               

               Cow position:
               chr1:91674454-91674220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-402
               

               Cow position:
               chr1:68820901-68821138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-402
               

               Cow position:
               chr1:85413496-85413258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               214, 11
               

               Conread position:
               166-403
               

               Cow position:
               chr1:19545141-19545380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               188
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               199, 71
               

               Conread position:
               166-405
               

               Cow position:
               chr1:96488142-96487899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               166-406
               

               Cow position:
               chr1:22628681-22628920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               188, 7
               

               Conread position:
               166-406
               

               Cow position:
               chr1:35597591-35597835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-406
               

               Cow position:
               chr1:36929863-36930107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-406
               

               Cow position:
               chr1:44517632-44517389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               183, 40
               

               Conread position:
               166-406
               

               Cow position:
               chr1:52941011-52941249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               208, 27
               

               Conread position:
               166-406
               

               Cow position:
               chr1:56140171-56140414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               166-406
               

               Cow position:
               chr1:82958095-82958334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               40, 86
               

               Conread position:
               166-407
               

               Cow position:
               chr1:476102-475857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:1022844-1023089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:1028591-1028346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:3537787-3538031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               40, 44
               

               Conread position:
               166-407
               

               Cow position:
               chr1:3931416-3931661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:3969062-3969307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:5301323-5301078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:7161596-7161840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 112
               

               Conread position:
               166-407
               

               Cow position:
               chr1:7325261-7325016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               52, 60
               

               Conread position:
               166-407
               

               Cow position:
               chr1:7416701-7416456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:7685675-7685919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               210, 188
               

               Conread position:
               166-407
               

               Cow position:
               chr1:7867996-7867751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:8513044-8513289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:8516847-8517092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:8845842-8845597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:8856831-8857076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:9593197-9593437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               208, 188
               

               Conread position:
               166-407
               

               Cow position:
               chr1:10728309-10728064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:12375339-12375094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:13131429-13131184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:13150765-13150520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:13298757-13298512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:15476657-15476902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:15744041-15743796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:16272454-16272695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               210, 89
               

               Conread position:
               166-407
               

               Cow position:
               chr1:16839541-16839296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:20389390-20389145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:20714343-20714588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:21038074-21037829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:21060677-21060433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               210, 58
               

               Conread position:
               166-407
               

               Cow position:
               chr1:21539427-21539182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:22143245-22143000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:22295475-22295717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:22547036-22546791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:23920488-23920243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               40, 44
               

               Conread position:
               166-407
               

               Cow position:
               chr1:24015366-24015611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:24410937-24411182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:24528650-24528879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               210, 64
               

               Conread position:
               166-407
               

               Cow position:
               chr1:24736303-24736548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:24749732-24749977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:25177781-25178026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:25554035-25553791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               208, 40
               

               Conread position:
               166-407
               

               Cow position:
               chr1:26789965-26789720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:28275198-28274953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:29429826-29429581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:30530813-30531056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               163, 86
               

               Conread position:
               166-407
               

               Cow position:
               chr1:31405975-31405730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:31714487-31714732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:31720450-31720205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:32109046-32108802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               104, 48
               

               Conread position:
               166-407
               

               Cow position:
               chr1:32562315-32562560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:33041026-33040785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 112
               

               Conread position:
               166-407
               

               Cow position:
               chr1:34198171-34197926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:34875199-34874954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:35147317-35147562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               171, 179
               

               Conread position:
               166-407
               

               Cow position:
               chr1:36645230-36645473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               210, 38
               

               Conread position:
               166-407
               

               Cow position:
               chr1:36706214-36706459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:39160448-39160693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:40310966-40310728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               139, 112
               

               Conread position:
               166-407
               

               Cow position:
               chr1:40604247-40604004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               210, 152
               

               Conread position:
               166-407
               

               Cow position:
               chr1:46121662-46121907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:46354874-46354630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               208, 108
               

               Conread position:
               166-407
               

               Cow position:
               chr1:47077958-47078203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:47418669-47418424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:47544723-47544481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               210, 104
               

               Conread position:
               166-407
               

               Cow position:
               chr1:48736158-48735913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:50357749-50357994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:50671039-50670794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               207, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:50687947-50687702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:52068737-52068492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:52170622-52170866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               210, 35
               

               Conread position:
               166-407
               

               Cow position:
               chr1:52354452-52354697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               179
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:52372373-52372132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               210, 113
               

               Conread position:
               166-407
               

               Cow position:
               chr1:55292419-55292664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               171, 179
               

               Conread position:
               166-407
               

               Cow position:
               chr1:55781098-55780855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               210, 51
               

               Conread position:
               166-407
               

               Cow position:
               chr1:57572056-57571811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:57577691-57577446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:57615715-57615470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:57617967-57617730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               210, 133
               

               Conread position:
               166-407
               

               Cow position:
               chr1:57848335-57848089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:58386342-58386097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:59730007-59730250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               208, 112
               

               Conread position:
               166-407
               

               Cow position:
               chr1:62224147-62223902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               14, 21
               

               Conread position:
               166-407
               

               Cow position:
               chr1:62507021-62507266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               163, 169
               

               Conread position:
               166-407
               

               Cow position:
               chr1:62529560-62529805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:62710964-62711211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               207, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:63340250-63340495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:63388319-63388564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:63582890-63583135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:64778647-64778402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:64817927-64818172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:65390784-65390540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               210, 30
               

               Conread position:
               166-407
               

               Cow position:
               chr1:66577273-66577029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               210, 102
               

               Conread position:
               166-407
               

               Cow position:
               chr1:67001895-67001650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               88, 102
               

               Conread position:
               166-407
               

               Cow position:
               chr1:67717109-67717354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:68087829-68087584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:68096932-68097177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               40, 52
               

               Conread position:
               166-407
               

               Cow position:
               chr1:68280371-68280126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:69019456-69019701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:69407327-69407084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               210, 109
               

               Conread position:
               166-407
               

               Cow position:
               chr1:69513206-69513451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:69919484-69919730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:70543703-70543459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 121
               

               Conread position:
               166-407
               

               Cow position:
               chr1:71774011-71774256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:71821958-71822202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               92, 123
               

               Conread position:
               166-407
               

               Cow position:
               chr1:72625077-72624832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:72805794-72806039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               171, 179
               

               Conread position:
               166-407
               

               Cow position:
               chr1:73062430-73062681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:73448799-73448554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               210, 24
               

               Conread position:
               166-407
               

               Cow position:
               chr1:73464559-73464314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:73564336-73564581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:73995658-73995407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:74283101-74283346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:75935256-75935501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:76478893-76478648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:77102888-77103131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:77223360-77223115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:77552968-77553214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               171, 179
               

               Conread position:
               166-407
               

               Cow position:
               chr1:78234464-78234708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 171
               

               Conread position:
               166-407
               

               Cow position:
               chr1:78920786-78921031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:80011187-80010942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:80356506-80356749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               14, 21
               

               Conread position:
               166-407
               

               Cow position:
               chr1:81669923-81670169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               203, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:81779892-81779650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:81911637-81911882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:82481897-82482142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:84284928-84284682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:84895067-84894821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               194, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:85776238-85776483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:86497513-86497268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:86598773-86599015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               194, 90
               

               Conread position:
               166-407
               

               Cow position:
               chr1:87565473-87565228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:89084627-89084386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               72, 163
               

               Conread position:
               166-407
               

               Cow position:
               chr1:90095531-90095773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:90132473-90132718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:90392533-90392780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:90914047-90913802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:91084700-91084945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:91106260-91106017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               14, 22
               

               Conread position:
               166-407
               

               Cow position:
               chr1:91799029-91799267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               168, 129
               

               Conread position:
               166-407
               

               Cow position:
               chr1:91903246-91902997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:94962120-94962365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:95457575-95457330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:95592502-95592747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:95604974-95604729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:97075274-97075518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               210, 188
               

               Conread position:
               166-407
               

               Cow position:
               chr1:97171545-97171300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:97250772-97251016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               233, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:97512877-97512634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 50
               

               Conread position:
               166-407
               

               Cow position:
               chr1:97513119-97513364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:98353171-98353416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-407
               

               Cow position:
               chr1:98534229-98534474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               166-412
               

               Cow position:
               chr1:39101018-39100772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               210, 226
               

               Conread position:
               166-413
               

               Cow position:
               chr1:1053548-1053300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               43, 98
               

               Conread position:
               166-413
               

               Cow position:
               chr1:5506725-5506477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               210, 100
               

               Conread position:
               166-413
               

               Cow position:
               chr1:58341136-58340885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               166-413
               

               Cow position:
               chr1:83048246-83048487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               209, 94
               

               Conread position:
               166-413
               

               Cow position:
               chr1:101972985-101973239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-414
               

               Cow position:
               chr1:28877319-28877067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               166-421
               

               Cow position:
               chr1:18196819-18196562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               178, 184
               

               Conread position:
               166-460
               

               Cow position:
               chr1:8610902-8611200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               50, 60
               

               Conread position:
               167-364
               

               Cow position:
               chr1:28068305-28068113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               167-371
               

               Cow position:
               chr1:54732511-54732699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               167-382
               

               Cow position:
               chr1:30504428-30504219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               167-398
               

               Cow position:
               chr1:29519901-29520134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               209, 14
               

               Conread position:
               167-406
               

               Cow position:
               chr1:91733843-91733600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               209, 0
               

               Conread position:
               167-406
               

               Cow position:
               chr1:100800313-100800076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               207, 70
               

               Conread position:
               167-407
               

               Cow position:
               chr1:19657995-19657748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               34, 149
               

               Conread position:
               167-407
               

               Cow position:
               chr1:22251116-22251356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               209, 87
               

               Conread position:
               167-407
               

               Cow position:
               chr1:51732105-51732349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               207, 0
               

               Conread position:
               167-407
               

               Cow position:
               chr1:54596714-54596957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               70, 26
               

               Conread position:
               167-407
               

               Cow position:
               chr1:58066745-58066988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               209, 47
               

               Conread position:
               167-407
               

               Cow position:
               chr1:72463102-72462856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               91, 17
               

               Conread position:
               168-398
               

               Cow position:
               chr1:33996962-33997182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               208, 61
               

               Conread position:
               168-398
               

               Cow position:
               chr1:36613319-36613545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               178
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               208, 69
               

               Conread position:
               168-398
               

               Cow position:
               chr1:40122463-40122231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               18, 23
               

               Conread position:
               168-407
               

               Cow position:
               chr1:3381697-3381936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               208, 45
               

               Conread position:
               168-407
               

               Cow position:
               chr1:30373109-30372870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               208, 106
               

               Conread position:
               168-407
               

               Cow position:
               chr1:89185223-89185471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               168-408
               

               Cow position:
               chr1:67290822-67290586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               209, 39
               

               Conread position:
               168-413
               

               Cow position:
               chr1:4027148-4026900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 174
               

               Conread position:
               169-281
               

               Cow position:
               chr1:22192719-22192607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               89
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               169-335
               

               Cow position:
               chr1:86482858-86482697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               65, 29
               

               Conread position:
               169-389
               

               Cow position:
               chr1:38712982-38712767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               157, 0
               

               Conread position:
               169-394
               

               Cow position:
               chr1:31414006-31414227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               207, 68
               

               Conread position:
               169-404
               

               Cow position:
               chr1:66491797-66491558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               207, 0
               

               Conread position:
               169-405
               

               Cow position:
               chr1:2218994-2219231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               176, 15
               

               Conread position:
               169-407
               

               Cow position:
               chr1:61494836-61494595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               77, 97
               

               Conread position:
               169-407
               

               Cow position:
               chr1:89742041-89742294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               193
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               170-316
               

               Cow position:
               chr1:677436-677290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               170-375
               

               Cow position:
               chr1:51531720-51531527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               60, 11
               

               Conread position:
               170-397
               

               Cow position:
               chr1:90234999-90235220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               206, 104
               

               Conread position:
               170-398
               

               Cow position:
               chr1:10070888-10071117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               207, 0
               

               Conread position:
               170-398
               

               Cow position:
               chr1:49132158-49132387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               204, 0
               

               Conread position:
               170-399
               

               Cow position:
               chr1:97206574-97206344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               206, 0
               

               Conread position:
               170-406
               

               Cow position:
               chr1:12213528-12213768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               206, 0
               

               Conread position:
               170-407
               

               Cow position:
               chr1:47922648-47922889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               204, 0
               

               Conread position:
               170-407
               

               Cow position:
               chr1:80336291-80336532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               194
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               60, 32
               

               Conread position:
               170-407
               

               Cow position:
               chr1:82227117-82226879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               55, 119
               

               Conread position:
               170-458
               

               Cow position:
               chr1:82095135-82095418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               154, 94
               

               Conread position:
               172-402
               

               Cow position:
               chr1:60665449-60665219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               207, 42
               

               Conread position:
               172-407
               

               Cow position:
               chr1:37660493-37660726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               224, 56
               

               Conread position:
               172-413
               

               Cow position:
               chr1:90836047-90836291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               204, 0
               

               Conread position:
               173-335
               

               Cow position:
               chr1:75382945-75382785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               60, 38
               

               Conread position:
               173-345
               

               Cow position:
               chr1:15627960-15627791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               113, 87
               

               Conread position:
               173-388
               

               Cow position:
               chr1:31347965-31348168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               203, 87
               

               Conread position:
               173-389
               

               Cow position:
               chr1:39702772-39702573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               203, 43
               

               Conread position:
               173-401
               

               Cow position:
               chr1:72141514-72141292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               59, 107
               

               Conread position:
               173-407
               

               Cow position:
               chr1:37694530-37694765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               203, 117
               

               Conread position:
               173-407
               

               Cow position:
               chr1:72286106-72286331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               201, 64
               

               Conread position:
               173-413
               

               Cow position:
               chr1:31548788-31548550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               203, 15
               

               Conread position:
               174-407
               

               Cow position:
               chr1:77176906-77177142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               10, 20
               

               Conread position:
               175-375
               

               Cow position:
               chr1:31899583-31899777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               96, 32
               

               Conread position:
               175-382
               

               Cow position:
               chr1:19516456-19516660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               179, 41
               

               Conread position:
               175-382
               

               Cow position:
               chr1:64160289-64160087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               53, 90
               

               Conread position:
               175-399
               

               Cow position:
               chr1:99398831-99398606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               201, 0
               

               Conread position:
               175-401
               

               Cow position:
               chr1:49269095-49268868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               199, 0
               

               Conread position:
               175-405
               

               Cow position:
               chr1:44094511-44094736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               31, 19
               

               Conread position:
               175-406
               

               Cow position:
               chr1:53313360-53313128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               199, 0
               

               Conread position:
               175-407
               

               Cow position:
               chr1:8884777-8884541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               199, 0
               

               Conread position:
               175-407
               

               Cow position:
               chr1:18208449-18208215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               199, 124
               

               Conread position:
               175-407
               

               Cow position:
               chr1:32767709-32767944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               199, 104
               

               Conread position:
               175-407
               

               Cow position:
               chr1:79015604-79015368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               201, 0
               

               Conread position:
               175-407
               

               Cow position:
               chr1:85796162-85795926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               201, 0
               

               Conread position:
               175-413
               

               Cow position:
               chr1:56412253-56412012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               201, 179
               

               Conread position:
               175-413
               

               Cow position:
               chr1:94256295-94256529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               223, 111
               

               Conread position:
               176-406
               

               Cow position:
               chr1:57119397-57119622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               200, 33
               

               Conread position:
               177-369
               

               Cow position:
               chr1:59192692-59192885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               177-398
               

               Cow position:
               chr1:52496730-52496506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               181
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               53, 102
               

               Conread position:
               177-399
               

               Cow position:
               chr1:102553180-102552962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               197, 109
               

               Conread position:
               177-403
               

               Cow position:
               chr1:59278760-59278539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               199, 149
               

               Conread position:
               177-407
               

               Cow position:
               chr1:35491630-35491858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               158, 120
               

               Conread position:
               177-407
               

               Cow position:
               chr1:38688423-38688193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               199, 51
               

               Conread position:
               177-407
               

               Cow position:
               chr1:54206872-54207098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               199, 60
               

               Conread position:
               177-407
               

               Cow position:
               chr1:75093446-75093212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               199, 0
               

               Conread position:
               177-413
               

               Cow position:
               chr1:89344858-89344621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               60, 114
               

               Conread position:
               178-395
               

               Cow position:
               chr1:84786721-84786504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 46
               

               Conread position:
               178-398
               

               Cow position:
               chr1:95017573-95017783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               198, 59
               

               Conread position:
               178-407
               

               Cow position:
               chr1:58439107-58439323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               178-407
               

               Cow position:
               chr1:69445310-69445092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               199, 70
               

               Conread position:
               179-361
               

               Cow position:
               chr1:3429564-3429741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               46, 78
               

               Conread position:
               179-365
               

               Cow position:
               chr1:4539488-4539675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               55, 35
               

               Conread position:
               179-399
               

               Cow position:
               chr1:61735487-61735710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               180-356
               

               Cow position:
               chr1:7186739-7186560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               180-379
               

               Cow position:
               chr1:99118333-99118134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               38, 18
               

               Conread position:
               183-357
               

               Cow position:
               chr1:92010259-92010085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               34, 55
               

               Conread position:
               183-407
               

               Cow position:
               chr1:17937549-17937774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               6, 105
               

               Conread position:
               183-407
               

               Cow position:
               chr1:22827108-22826885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               178
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               193, 54
               

               Conread position:
               183-407
               

               Cow position:
               chr1:30082691-30082464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               24, 11
               

               Conread position:
               183-407
               

               Cow position:
               chr1:77704488-77704716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               97, 11
               

               Conread position:
               184-371
               

               Cow position:
               chr1:92197405-92197218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               13, 54
               

               Conread position:
               184-386
               

               Cow position:
               chr1:92642501-92642695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               35, 106
               

               Conread position:
               185-316
               

               Cow position:
               chr1:57945943-57946074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               101
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               185-360
               

               Cow position:
               chr1:14561003-14561179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               185-398
               

               Cow position:
               chr1:55686278-55686489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 43
               

               Conread position:
               185-398
               

               Cow position:
               chr1:60492145-60491937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               191, 93
               

               Conread position:
               185-398
               

               Cow position:
               chr1:62964216-62964009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               189, 22
               

               Conread position:
               185-407
               

               Cow position:
               chr1:13250343-13250569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               191, 0
               

               Conread position:
               185-407
               

               Cow position:
               chr1:33547195-33547421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               191, 0
               

               Conread position:
               185-407
               

               Cow position:
               chr1:88678549-88678323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               190, 9
               

               Conread position:
               185-407
               

               Cow position:
               chr1:89766341-89766555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               169, 0
               

               Conread position:
               185-407
               

               Cow position:
               chr1:100887305-100887530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               191, 196
               

               Conread position:
               186-315
               

               Cow position:
               chr1:56413577-56413706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               186-374
               

               Cow position:
               chr1:47269073-47268885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               186-388
               

               Cow position:
               chr1:70533995-70534194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               38, 28
               

               Conread position:
               186-389
               

               Cow position:
               chr1:197064-197263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               30, 53
               

               Conread position:
               186-389
               

               Cow position:
               chr1:97611715-97611913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               186-398
               

               Cow position:
               chr1:56720297-56720510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               190, 0
               

               Conread position:
               186-398
               

               Cow position:
               chr1:81569093-81569306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               180, 51
               

               Conread position:
               186-398
               

               Cow position:
               chr1:97761560-97761358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               15, 53
               

               Conread position:
               186-399
               

               Cow position:
               chr1:57534097-57533883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               188, 0
               

               Conread position:
               186-400
               

               Cow position:
               chr1:96136424-96136213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               5, 25
               

               Conread position:
               186-403
               

               Cow position:
               chr1:52488023-52488234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               175
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               50, 94
               

               Conread position:
               186-406
               

               Cow position:
               chr1:83137138-83136914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               190, 0
               

               Conread position:
               186-406
               

               Cow position:
               chr1:87239740-87239964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               191, 0
               

               Conread position:
               186-407
               

               Cow position:
               chr1:32960002-32960227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               188, 0
               

               Conread position:
               186-407
               

               Cow position:
               chr1:33412826-33413052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               151, 159
               

               Conread position:
               186-407
               

               Cow position:
               chr1:41486815-41486590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               20, 24
               

               Conread position:
               186-407
               

               Cow position:
               chr1:52850489-52850264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               190, 0
               

               Conread position:
               186-407
               

               Cow position:
               chr1:60910289-60910063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               43, 126
               

               Conread position:
               186-407
               

               Cow position:
               chr1:69872300-69872525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               188, 0
               

               Conread position:
               186-407
               

               Cow position:
               chr1:78586077-78586300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               188, 93
               

               Conread position:
               186-407
               

               Cow position:
               chr1:88327046-88327264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               190, 54
               

               Conread position:
               186-407
               

               Cow position:
               chr1:98977881-98977654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               190, 0
               

               Conread position:
               186-408
               

               Cow position:
               chr1:71796970-71797180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               188, 51
               

               Conread position:
               186-408
               

               Cow position:
               chr1:82936646-82936865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               15, 53
               

               Conread position:
               187-373
               

               Cow position:
               chr1:74013322-74013511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               187-399
               

               Cow position:
               chr1:86371835-86372048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               189, 0
               

               Conread position:
               187-405
               

               Cow position:
               chr1:24201810-24202016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               189, 95
               

               Conread position:
               187-406
               

               Cow position:
               chr1:35170275-35170056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               31, 51
               

               Conread position:
               188-384
               

               Cow position:
               chr1:3757892-3757696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               42, 86
               

               Conread position:
               188-398
               

               Cow position:
               chr1:43878370-43878582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               11, 88
               

               Conread position:
               188-402
               

               Cow position:
               chr1:71779267-71779048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               188-407
               

               Cow position:
               chr1:43893861-43893646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               138, 41
               

               Conread position:
               188-413
               

               Cow position:
               chr1:65067003-65067240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               46, 21
               

               Conread position:
               189-407
               

               Cow position:
               chr1:12607553-12607775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               185, 0
               

               Conread position:
               190-367
               

               Cow position:
               chr1:29648469-29648642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               190-371
               

               Cow position:
               chr1:93536100-93536280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               83, 120
               

               Conread position:
               190-380
               

               Cow position:
               chr1:5135760-5135943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               184, 47
               

               Conread position:
               190-383
               

               Cow position:
               chr1:23905932-23905740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               44, 24
               

               Conread position:
               190-398
               

               Cow position:
               chr1:27545753-27545547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               27, 14
               

               Conread position:
               192-390
               

               Cow position:
               chr1:46218512-46218321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               182, 25
               

               Conread position:
               193-331
               

               Cow position:
               chr1:99570534-99570667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               193-375
               

               Cow position:
               chr1:95071915-95071740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               193-393
               

               Cow position:
               chr1:13614782-13614984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               162
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               43, 129
               

               Conread position:
               193-407
               

               Cow position:
               chr1:92198700-92198491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               186, 23
               

               Conread position:
               193-407
               

               Cow position:
               chr1:98577407-98577197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               163, 9
               

               Conread position:
               193-414
               

               Cow position:
               chr1:3076464-3076678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               7, 46
               

               Conread position:
               194-375
               

               Cow position:
               chr1:91147420-91147600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               194-398
               

               Cow position:
               chr1:63049755-63049556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               182, 85
               

               Conread position:
               194-407
               

               Cow position:
               chr1:11665345-11665562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               194-407
               

               Cow position:
               chr1:26586417-26586200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               194-407
               

               Cow position:
               chr1:34406727-34406510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               194-407
               

               Cow position:
               chr1:64062273-64062054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               6, 80
               

               Conread position:
               194-408
               

               Cow position:
               chr1:35769379-35769163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               85, 126
               

               Conread position:
               194-413
               

               Cow position:
               chr1:29791739-29791957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               183, 16
               

               Conread position:
               195-382
               

               Cow position:
               chr1:67916966-67916782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               43, 75
               

               Conread position:
               195-406
               

               Cow position:
               chr1:40062381-40062167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               181, 42
               

               Conread position:
               196-336
               

               Cow position:
               chr1:21500520-21500657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               196-355
               

               Cow position:
               chr1:22791150-22790991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               11, 42
               

               Conread position:
               197-335
               

               Cow position:
               chr1:51044541-51044404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               198-390
               

               Cow position:
               chr1:96192937-96193136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               79, 26
               

               Conread position:
               198-406
               

               Cow position:
               chr1:56426442-56426227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               86, 18
               

               Conread position:
               198-407
               

               Cow position:
               chr1:64928675-64928887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               178, 30
               

               Conread position:
               199-339
               

               Cow position:
               chr1:99792740-99792601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               200-397
               

               Cow position:
               chr1:53207762-53207964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               36, 93
               

               Conread position:
               200-413
               

               Cow position:
               chr1:37886859-37887074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               177, 48
               

               Conread position:
               200-413
               

               Cow position:
               chr1:73757012-73756805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               120, 28
               

               Conread position:
               201-387
               

               Cow position:
               chr1:24561526-24561710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               33, 81
               

               Conread position:
               201-398
               

               Cow position:
               chr1:40265213-40265410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               175, 153
               

               Conread position:
               201-405
               

               Cow position:
               chr1:4618940-4619144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               33, 94
               

               Conread position:
               201-407
               

               Cow position:
               chr1:30692786-30692997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               201-407
               

               Cow position:
               chr1:73442693-73442902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               10, 82
               

               Conread position:
               201-407
               

               Cow position:
               chr1:82162003-82162212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               176, 152
               

               Conread position:
               201-413
               

               Cow position:
               chr1:81579687-81579471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               175, 22
               

               Conread position:
               201-420
               

               Cow position:
               chr1:24570964-24571182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               33, 81
               

               Conread position:
               202-375
               

               Cow position:
               chr1:42138789-42138619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               144, 45
               

               Conread position:
               202-389
               

               Cow position:
               chr1:79465706-79465518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               175, 0
               

               Conread position:
               204-367
               

               Cow position:
               chr1:62996414-62996257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               11, 5
               

               Conread position:
               204-407
               

               Cow position:
               chr1:83185172-83184971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               172, 125
               

               Conread position:
               204-408
               

               Cow position:
               chr1:5990833-5990631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               170, 55
               

               Conread position:
               205-407
               

               Cow position:
               chr1:51981153-51980945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               163
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               205-407
               

               Cow position:
               chr1:77836336-77836532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               171, 67
               

               Conread position:
               206-406
               

               Cow position:
               chr1:91978105-91978307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               170, 0
               

               Conread position:
               209-375
               

               Cow position:
               chr1:98741594-98741435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               209-406
               

               Cow position:
               chr1:78291917-78291716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               167, 0
               

               Conread position:
               210-414
               

               Cow position:
               chr1:83888-83689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               108, 17
               

               Conread position:
               211-394
               

               Cow position:
               chr1:54484982-54484801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               165, 17
               

               Conread position:
               214-346
               

               Cow position:
               chr1:8287701-8287831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               21, 66
               

               Conread position:
               214-375
               

               Cow position:
               chr1:102768127-102767966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               130, 57
               

               Conread position:
               214-386
               

               Cow position:
               chr1:26159518-26159689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               214-398
               

               Cow position:
               chr1:61149627-61149802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               162, 21
               

               Conread position:
               214-401
               

               Cow position:
               chr1:40122965-40122778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               163, 178
               

               Conread position:
               214-413
               

               Cow position:
               chr1:1760359-1760156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               162, 0
               

               Conread position:
               214-413
               

               Cow position:
               chr1:71691731-71691526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               161
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               215-357
               

               Cow position:
               chr1:87083578-87083437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               19, 64
               

               Conread position:
               215-383
               

               Cow position:
               chr1:6240519-6240361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               23, 42
               

               Conread position:
               215-387
               

               Cow position:
               chr1:11984605-11984777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               20, 40
               

               Conread position:
               215-395
               

               Cow position:
               chr1:14649057-14649237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               141, 24
               

               Conread position:
               215-407
               

               Cow position:
               chr1:23624083-23623873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               41, 15
               

               Conread position:
               215-407
               

               Cow position:
               chr1:86709105-86709301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               159, 74
               

               Conread position:
               216-387
               

               Cow position:
               chr1:3872759-3872592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               158, 21
               

               Conread position:
               216-389
               

               Cow position:
               chr1:69425294-69425467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               159, 66
               

               Conread position:
               216-390
               

               Cow position:
               chr1:97984006-97983830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               74, 115
               

               Conread position:
               216-398
               

               Cow position:
               chr1:67406551-67406378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               216-399
               

               Cow position:
               chr1:60120339-60120158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               161, 20
               

               Conread position:
               216-407
               

               Cow position:
               chr1:51983492-51983314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               161, 22
               

               Conread position:
               217-413
               

               Cow position:
               chr1:97430733-97430940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               218-360
               

               Cow position:
               chr1:53650800-53650659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               47, 10
               

               Conread position:
               218-387
               

               Cow position:
               chr1:6798988-6799159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               219-407
               

               Cow position:
               chr1:65481124-65480931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               220-387
               

               Cow position:
               chr1:47427761-47427595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               155, 69
               

               Conread position:
               220-389
               

               Cow position:
               chr1:2464720-2464889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               31, 38
               

               Conread position:
               220-406
               

               Cow position:
               chr1:96019170-96018991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               13, 60
               

               Conread position:
               221-367
               

               Cow position:
               chr1:65638112-65637966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               221-382
               

               Cow position:
               chr1:94378935-94378777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               132, 16
               

               Conread position:
               221-385
               

               Cow position:
               chr1:42728078-42728240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               221-386
               

               Cow position:
               chr1:56618773-56618934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               221-389
               

               Cow position:
               chr1:30882414-30882576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               155, 9
               

               Conread position:
               221-389
               

               Cow position:
               chr1:84226473-84226638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               155, 23
               

               Conread position:
               221-390
               

               Cow position:
               chr1:52036538-52036704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               155, 58
               

               Conread position:
               221-398
               

               Cow position:
               chr1:41092963-41093140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               156, 132
               

               Conread position:
               221-407
               

               Cow position:
               chr1:101792196-101792378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               136, 20
               

               Conread position:
               221-413
               

               Cow position:
               chr1:61304585-61304393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               155, 57
               

               Conread position:
               221-422
               

               Cow position:
               chr1:100132773-100132573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               19, 57
               

               Conread position:
               222-380
               

               Cow position:
               chr1:95467436-95467591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               154, 18
               

               Conread position:
               222-406
               

               Cow position:
               chr1:67577971-67577784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               151, 41
               

               Conread position:
               222-407
               

               Cow position:
               chr1:57541597-57541781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               5, 58
               

               Conread position:
               222-407
               

               Cow position:
               chr1:57956954-57957140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               17, 65
               

               Conread position:
               222-416
               

               Cow position:
               chr1:71675995-71676189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               154, 38
               

               Conread position:
               223-366
               

               Cow position:
               chr1:71716079-71715937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               223-376
               

               Cow position:
               chr1:25087589-25087745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               223-398
               

               Cow position:
               chr1:60986871-60986699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               10, 53
               

               Conread position:
               223-407
               

               Cow position:
               chr1:32360239-32360419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               112, 123
               

               Conread position:
               223-413
               

               Cow position:
               chr1:635917-636112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               223-472
               

               Cow position:
               chr1:63311464-63311215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               17, 46
               

               Conread position:
               224-386
               

               Cow position:
               chr1:39248893-39249053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               15, 40
               

               Conread position:
               225-408
               

               Cow position:
               chr1:2317736-2317922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               5, 144
               

               Conread position:
               225-413
               

               Cow position:
               chr1:88338599-88338409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               151, 127
               

               Conread position:
               227-398
               

               Cow position:
               chr1:27957129-27956958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               150, 47
               

               Conread position:
               229-407
               

               Cow position:
               chr1:16997503-16997683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               148, 124
               

               Conread position:
               229-407
               

               Cow position:
               chr1:52563900-52564069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               140, 50
               

               Conread position:
               229-407
               

               Cow position:
               chr1:101776564-101776386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               144, 168
               

               Conread position:
               229-408
               

               Cow position:
               chr1:50765255-50765081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               145, 35
               

               Conread position:
               230-374
               

               Cow position:
               chr1:54117604-54117464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               230-381
               

               Cow position:
               chr1:58341507-58341356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               146, 138
               

               Conread position:
               230-385
               

               Cow position:
               chr1:40292067-40292221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               146, 124
               

               Conread position:
               230-385
               

               Cow position:
               chr1:88265658-88265815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               43, 123
               

               Conread position:
               230-388
               

               Cow position:
               chr1:52510348-52510503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               146, 49
               

               Conread position:
               230-388
               

               Cow position:
               chr1:57981652-57981809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               230-389
               

               Cow position:
               chr1:58385438-58385273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               230-391
               

               Cow position:
               chr1:1347929-1348087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               125, 30
               

               Conread position:
               230-398
               

               Cow position:
               chr1:25184026-25183853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               230-407
               

               Cow position:
               chr1:46821905-46821732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               146, 48
               

               Conread position:
               230-407
               

               Cow position:
               chr1:70865421-70865242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               146, 105
               

               Conread position:
               230-407
               

               Cow position:
               chr1:81321408-81321230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               112, 157
               

               Conread position:
               230-407
               

               Cow position:
               chr1:87966830-87967011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               14, 49
               

               Conread position:
               230-407
               

               Cow position:
               chr1:88648058-88648244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               230-408
               

               Cow position:
               chr1:96559236-96559059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               147, 48
               

               Conread position:
               230-411
               

               Cow position:
               chr1:92048728-92048553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               146, 34
               

               Conread position:
               231-373
               

               Cow position:
               chr1:52415060-52415203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               58, 125
               

               Conread position:
               231-374
               

               Cow position:
               chr1:81371778-81371917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               231-388
               

               Cow position:
               chr1:65144567-65144719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               231-388
               

               Cow position:
               chr1:85410243-85410398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               83, 107
               

               Conread position:
               231-389
               

               Cow position:
               chr1:59557620-59557461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               231-405
               

               Cow position:
               chr1:90298061-90297886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               231-406
               

               Cow position:
               chr1:91051768-91051940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               102, 147
               

               Conread position:
               231-407
               

               Cow position:
               chr1:30041620-30041447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               145, 130
               

               Conread position:
               231-407
               

               Cow position:
               chr1:35844037-35844212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               145, 32
               

               Conread position:
               231-407
               

               Cow position:
               chr1:53579216-53579030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               231-407
               

               Cow position:
               chr1:54294763-54294946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               231-407
               

               Cow position:
               chr1:56719214-56719031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               123, 94
               

               Conread position:
               231-407
               

               Cow position:
               chr1:89356229-89356052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               145, 57
               

               Conread position:
               231-410
               

               Cow position:
               chr1:31815327-31815143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               55, 38
               

               Conread position:
               232-371
               

               Cow position:
               chr1:58882118-58882252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               110
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               232-375
               

               Cow position:
               chr1:39718912-39718766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               232-388
               

               Cow position:
               chr1:23577480-23577638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               232-388
               

               Cow position:
               chr1:86020169-86020327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               85, 81
               

               Conread position:
               232-394
               

               Cow position:
               chr1:4239430-4239271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               160, 19
               

               Conread position:
               232-395
               

               Cow position:
               chr1:49181951-49181787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               33, 22
               

               Conread position:
               232-406
               

               Cow position:
               chr1:82919990-82920161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               144, 19
               

               Conread position:
               232-407
               

               Cow position:
               chr1:40170476-40170297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               105, 114
               

               Conread position:
               232-407
               

               Cow position:
               chr1:71666281-71666457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               232-407
               

               Cow position:
               chr1:79497798-79497977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               232-407
               

               Cow position:
               chr1:98494319-98494148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               143, 96
               

               Conread position:
               232-408
               

               Cow position:
               chr1:20564660-20564482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               233-373
               

               Cow position:
               chr1:99104992-99105126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               233-388
               

               Cow position:
               chr1:100537708-100537550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               233-389
               

               Cow position:
               chr1:72641903-72641746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               233-394
               

               Cow position:
               chr1:72803338-72803505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               233-401
               

               Cow position:
               chr1:60086500-60086331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               123, 56
               

               Conread position:
               233-406
               

               Cow position:
               chr1:9437657-9437828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               143, 54
               

               Conread position:
               233-407
               

               Cow position:
               chr1:7022349-7022177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               144, 28
               

               Conread position:
               234-398
               

               Cow position:
               chr1:8659542-8659378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               52, 61
               

               Conread position:
               234-413
               

               Cow position:
               chr1:80183846-80184027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               142, 34
               

               Conread position:
               234-420
               

               Cow position:
               chr1:29462743-29462563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               19, 53
               

               Conread position:
               235-398
               

               Cow position:
               chr1:91370589-91370746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               141, 14
               

               Conread position:
               236-358
               

               Cow position:
               chr1:81515132-81515010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               236-407
               

               Cow position:
               chr1:63876900-63877076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               237-407
               

               Cow position:
               chr1:88029173-88029009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               139, 50
               

               Conread position:
               237-412
               

               Cow position:
               chr1:51700293-51700115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               76, 31
               

               Conread position:
               237-413
               

               Cow position:
               chr1:96928373-96928552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               238-414
               

               Cow position:
               chr1:72813298-72813125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               136, 40
               

               Conread position:
               239-406
               

               Cow position:
               chr1:85866949-85866785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               146, 69
               

               Conread position:
               240-407
               

               Cow position:
               chr1:31358318-31358485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               134, 114
               

               Conread position:
               241-407
               

               Cow position:
               chr1:41138469-41138636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               135, 38
               

               Conread position:
               243-398
               

               Cow position:
               chr1:26934655-26934807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               244-398
               

               Cow position:
               chr1:59019655-59019503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               110, 21
               

               Conread position:
               244-402
               

               Cow position:
               chr1:22200046-22199888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               5, 98
               

               Conread position:
               246-388
               

               Cow position:
               chr1:98023515-98023655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               246-398
               

               Cow position:
               chr1:36654473-36654321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               130, 7
               

               Conread position:
               246-413
               

               Cow position:
               chr1:95637422-95637254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               91, 31
               

               Conread position:
               248-388
               

               Cow position:
               chr1:33081147-33081284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               128, 31
               

               Conread position:
               248-398
               

               Cow position:
               chr1:3739871-3739729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               128, 30
               

               Conread position:
               248-408
               

               Cow position:
               chr1:85339008-85338845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               129, 111
               

               Conread position:
               249-407
               

               Cow position:
               chr1:21221075-21221234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               115
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               252-365
               

               Cow position:
               chr1:86340635-86340745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               96
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               252-407
               

               Cow position:
               chr1:79406202-79406361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               256-420
               

               Cow position:
               chr1:29451745-29451578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               121, 23
               

               Conread position:
               257-408
               

               Cow position:
               chr1:79632224-79632380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               259-407
               

               Cow position:
               chr1:76938127-76938279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               260-406
               

               Cow position:
               chr1:38418944-38418797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               262-388
               

               Cow position:
               chr1:10881682-10881558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               53, 22
               

               Conread position:
               263-407
               

               Cow position:
               chr1:37726515-37726654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               112, 16
               

               Conread position:
               263-407
               

               Cow position:
               chr1:50032510-50032365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               263-407
               

               Cow position:
               chr1:82880530-82880383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               113, 70
               

               Conread position:
               263-419
               

               Cow position:
               chr1:4227106-4226950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               113, 85
               

               Conread position:
               265-399
               

               Cow position:
               chr1:20950559-20950425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               111, 131
               

               Conread position:
               265-413
               

               Cow position:
               chr1:6760154-6760305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               109, 89
               

               Conread position:
               267-416
               

               Cow position:
               chr1:72105004-72104856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               109, 21
               

               Conread position:
               270-398
               

               Cow position:
               chr1:42175422-42175293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               270-407
               

               Cow position:
               chr1:3963477-3963337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               272-399
               

               Cow position:
               chr1:36920776-36920904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               274-407
               

               Cow position:
               chr1:98412793-98412662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               111
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               6, 26
               

               Conread position:
               279-386
               

               Cow position:
               chr1:98397366-98397472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               87
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               279-414
               

               Cow position:
               chr1:5289313-5289172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               110
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               280-408
               

               Cow position:
               chr1:84456687-84456554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               282-398
               

               Cow position:
               chr1:92976795-92976911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               92, 61
               

               Conread position:
               290-423
               

               Cow position:
               chr1:21560789-21560658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               87, 6
               

               Conread position:
               292-407
               

               Cow position:
               chr1:22823774-22823658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               293-401
               

               Cow position:
               chr1:100816377-100816269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               91
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               83, 66
               

               Conread position:
               293-407
               

               Cow position:
               chr1:8129867-8129981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               93
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               83, 61
               

               Conread position:
               301-398
               

               Cow position:
               chr1:55585768-55585865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               99
               

               Alignm identity:
               84
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               75, 53
               
Show alignments to all cow chromosomes.
Conread position:	62-388
Cow position:	chr1:22615558-22615885 (view UCSC Genome Browser custom track)
Alignm length:	328
Alignm identity:	126
Alignm E-value:	7e-25
Alignm gaps (pig, cow):	314, 0
Conread position:	101-407
Cow position:	chr1:95712238-95712548 (view UCSC Genome Browser custom track)
Alignm length:	311
Alignm identity:	159
Alignm E-value:	6e-23
Alignm gaps (pig, cow):	273, 0
Conread position:	136-407
Cow position:	chr1:24133074-24133337 (view UCSC Genome Browser custom track)
Alignm length:	276
Alignm identity:	207
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	238, 24
Conread position:	136-413
Cow position:	chr1:33717216-33716932 (view UCSC Genome Browser custom track)
Alignm length:	285
Alignm identity:	184
Alignm E-value:	0
Alignm gaps (pig, cow):	98, 0
Conread position:	137-338
Cow position:	chr1:101207810-101207623 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	146
Alignm E-value:	5e-22
Alignm gaps (pig, cow):	21, 48
Conread position:	137-389
Cow position:	chr1:85774442-85774198 (view UCSC Genome Browser custom track)
Alignm length:	257
Alignm identity:	189
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	14, 45
Conread position:	138-320
Cow position:	chr1:71228073-71227885 (view UCSC Genome Browser custom track)
Alignm length:	189
Alignm identity:	143
Alignm E-value:	5e-33
Alignm gaps (pig, cow):	36, 0
Conread position:	138-333
Cow position:	chr1:95654729-95654920 (view UCSC Genome Browser custom track)
Alignm length:	196
Alignm identity:	154
Alignm E-value:	4.00001e-40
Alignm gaps (pig, cow):	11, 0
Conread position:	138-389
Cow position:	chr1:67821226-67821471 (view UCSC Genome Browser custom track)
Alignm length:	253
Alignm identity:	182
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	237, 15
Conread position:	138-399
Cow position:	chr1:84255751-84255484 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	198
Alignm E-value:	0
Alignm gaps (pig, cow):	14, 0
Conread position:	138-407
Cow position:	chr1:72304390-72304652 (view UCSC Genome Browser custom track)
Alignm length:	274
Alignm identity:	196
Alignm E-value:	2e-36
Alignm gaps (pig, cow):	11, 66
Conread position:	139-275
Cow position:	chr1:43703392-43703257 (view UCSC Genome Browser custom track)
Alignm length:	137
Alignm identity:	110
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	89, 0
Conread position:	139-280
Cow position:	chr1:85826329-85826191 (view UCSC Genome Browser custom track)
Alignm length:	143
Alignm identity:	108
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	12, 91
Conread position:	139-288
Cow position:	chr1:100745591-100745443 (view UCSC Genome Browser custom track)
Alignm length:	151
Alignm identity:	112
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	98, 10
Conread position:	139-297
Cow position:	chr1:19568834-19568680 (view UCSC Genome Browser custom track)
Alignm length:	159
Alignm identity:	116
Alignm E-value:	5e-22
Alignm gaps (pig, cow):	98, 0
Conread position:	139-298
Cow position:	chr1:101632354-101632508 (view UCSC Genome Browser custom track)
Alignm length:	160
Alignm identity:	119
Alignm E-value:	6e-24
Alignm gaps (pig, cow):	90, 0
Conread position:	139-307
Cow position:	chr1:75933258-75933094 (view UCSC Genome Browser custom track)
Alignm length:	170
Alignm identity:	130
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	16, 91
Conread position:	139-316
Cow position:	chr1:724723-724547 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	129
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	16, 100
Conread position:	139-323
Cow position:	chr1:82443471-82443651 (view UCSC Genome Browser custom track)
Alignm length:	185
Alignm identity:	146
Alignm E-value:	3e-39
Alignm gaps (pig, cow):	140, 0
Conread position:	139-324
Cow position:	chr1:6788300-6788485 (view UCSC Genome Browser custom track)
Alignm length:	187
Alignm identity:	137
Alignm E-value:	4e-30
Alignm gaps (pig, cow):	8, 99