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Cow genome map

           
Conread name:
           
Ss1.1-rnbm29b_l4.5
        

               
Conread position:
               
112-396
               

               
Cow position:
               
chrX:45933046-45932756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
14, 238
               

               
Conread position:
               
136-400
               

               
Cow position:
               
chrX:39701232-39700974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
138-356
               

               
Cow position:
               
chrX:26285985-26285772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
138-386
               

               
Cow position:
               
chrX:11589581-11589828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 160
               

               
Conread position:
               
138-388
               

               
Cow position:
               
chrX:47248779-47249028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
138-398
               

               
Cow position:
               
chrX:34402004-34401747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 91
               

               
Conread position:
               
138-401
               

               
Cow position:
               
chrX:27509015-27509273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 84
               

               
Conread position:
               
138-413
               

               
Cow position:
               
chrX:18694920-18695189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 34
               

               
Conread position:
               
138-413
               

               
Cow position:
               
chrX:48195031-48195309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
139-269
               

               
Cow position:
               
chrX:27946050-27946183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
139-285
               

               
Cow position:
               
chrX:27685253-27685107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
139-288
               

               
Cow position:
               
chrX:34314035-34313890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
12, 91
               

               
Conread position:
               
139-297
               

               
Cow position:
               
chrX:5118498-5118654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
139-311
               

               
Cow position:
               
chrX:35969082-35969246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
139-314
               

               
Cow position:
               
chrX:30134165-30134339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
139-327
               

               
Cow position:
               
chrX:31252421-31252239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
139-333
               

               
Cow position:
               
chrX:1505715-1505528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
8, 46
               

               
Conread position:
               
139-346
               

               
Cow position:
               
chrX:33000908-33000706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
139-348
               

               
Cow position:
               
chrX:43779839-43780052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
139-350
               

               
Cow position:
               
chrX:47300899-47301105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
139-350
               

               
Cow position:
               
chrX:47302873-47303081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
139-352
               

               
Cow position:
               
chrX:31340713-31340501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
139-354
               

               
Cow position:
               
chrX:39938518-39938728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
139-355
               

               
Cow position:
               
chrX:46587826-46587611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
139-358
               

               
Cow position:
               
chrX:9425739-9425951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
139-362
               

               
Cow position:
               
chrX:19023450-19023225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 215
               

               
Conread position:
               
139-370
               

               
Cow position:
               
chrX:23091873-23091660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
139-371
               

               
Cow position:
               
chrX:1503343-1503117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
139-373
               

               
Cow position:
               
chrX:10437663-10437889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
89, 44
               

               
Conread position:
               
139-374
               

               
Cow position:
               
chrX:29509434-29509669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 143
               

               
Conread position:
               
139-375
               

               
Cow position:
               
chrX:7721993-7721758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 10
               

               
Conread position:
               
139-375
               

               
Cow position:
               
chrX:33639979-33639745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
139-380
               

               
Cow position:
               
chrX:9201557-9201315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
139-382
               

               
Cow position:
               
chrX:13382335-13382090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 0
               

               
Conread position:
               
139-382
               

               
Cow position:
               
chrX:41199110-41198870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
97, 54
               

               
Conread position:
               
139-384
               

               
Cow position:
               
chrX:38853202-38852960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
220, 51
               

               
Conread position:
               
139-386
               

               
Cow position:
               
chrX:11562161-11561916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chrX:8517876-8517636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chrX:10373321-10373067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chrX:16283939-16284187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chrX:21672559-21672311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 9
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chrX:23514011-23514258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 24
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chrX:37119600-37119359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chrX:41884408-41884658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 69
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chrX:44053264-44053018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chrX:44961755-44961507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
16, 121
               

               
Conread position:
               
139-389
               

               
Cow position:
               
chrX:40789216-40788964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 90
               

               
Conread position:
               
139-390
               

               
Cow position:
               
chrX:40035440-40035693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
156, 17
               

               
Conread position:
               
139-392
               

               
Cow position:
               
chrX:41743918-41743669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 135
               

               
Conread position:
               
139-394
               

               
Cow position:
               
chrX:48652717-48652975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
139-395
               

               
Cow position:
               
chrX:28835898-28836148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
7, 77
               

               
Conread position:
               
139-397
               

               
Cow position:
               
chrX:25713798-25713552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:151909-151651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 34
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:1055389-1055638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:6414052-6413796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:6544261-6544006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:7571909-7571656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:17498089-17497846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:17541964-17541714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
15, 64
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:23497663-23497913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 98
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:30133314-30133574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
22, 132
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:31250392-31250142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
237, 101
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:34192677-34192430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
15, 77
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:34376952-34376707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:36693242-36692985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:38006761-38007018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 14
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chrX:45414296-45414550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
237, 14
               

               
Conread position:
               
139-399
               

               
Cow position:
               
chrX:5288149-5288408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
139-399
               

               
Cow position:
               
chrX:11358055-11358316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
235, 0
               

               
Conread position:
               
139-399
               

               
Cow position:
               
chrX:22857042-22856781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
235, 0
               

               
Conread position:
               
139-405
               

               
Cow position:
               
chrX:20752258-20752007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
235, 10
               

               
Conread position:
               
139-405
               

               
Cow position:
               
chrX:28580232-28579963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
79, 89
               

               
Conread position:
               
139-406
               

               
Cow position:
               
chrX:5017407-5017667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
11, 100
               

               
Conread position:
               
139-406
               

               
Cow position:
               
chrX:11717783-11718041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 82
               

               
Conread position:
               
139-406
               

               
Cow position:
               
chrX:11844243-11844499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 59
               

               
Conread position:
               
139-406
               

               
Cow position:
               
chrX:41123066-41122811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
238, 10
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:8797260-8796988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 223
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:9226973-9227246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:11082618-11082875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:13070593-13070864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
124, 14
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:17725979-17725716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
95, 68
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:17980604-17980333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
235, 86
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:19015437-19015180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
237, 14
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:20583026-20582768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:20710079-20709813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:25232597-25232324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 100
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:25276490-25276761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
235, 14
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:25848916-25848653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
235, 17
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:31436478-31436218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
204, 9
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:31442825-31443083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:33983598-33983868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
235, 10
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:34532524-34532269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
215, 45
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:35803824-35803552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 87
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:42994617-42994352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 9
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chrX:47210839-47211112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
139-408
               

               
Cow position:
               
chrX:13868708-13868434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 148
               

               
Conread position:
               
139-408
               

               
Cow position:
               
chrX:23563787-23564060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
139-408
               

               
Cow position:
               
chrX:35224300-35224039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
118, 14
               

               
Conread position:
               
139-408
               

               
Cow position:
               
chrX:44192443-44192705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
5, 64
               

               
Conread position:
               
139-408
               

               
Cow position:
               
chrX:45437215-45436947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
140, 46
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:161416-161160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
237, 33
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:10831486-10831780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:11313776-11314046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:13913070-13912811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
215, 13
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:27516534-27516265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 129
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:28845837-28845576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
26, 114
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:34270406-34270148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
237, 47
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:38964112-38963844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:39545971-39546241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 54
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:45403821-45404102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:47873332-47873609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chrX:47967608-47967332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
7, 130
               

               
Conread position:
               
139-414
               

               
Cow position:
               
chrX:42585074-42585337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
235, 54
               

               
Conread position:
               
140-274
               

               
Cow position:
               
chrX:38728743-38728608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
140-306
               

               
Cow position:
               
chrX:27228131-27227966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 8
               

               
Conread position:
               
140-341
               

               
Cow position:
               
chrX:8869399-8869601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
11, 96
               

               
Conread position:
               
140-346
               

               
Cow position:
               
chrX:37781108-37781315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
128, 9
               

               
Conread position:
               
140-358
               

               
Cow position:
               
chrX:45846102-45845886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
140-360
               

               
Cow position:
               
chrX:29542214-29542430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
140-366
               

               
Cow position:
               
chrX:29601825-29602050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 98
               

               
Conread position:
               
140-376
               

               
Cow position:
               
chrX:10959391-10959629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 99
               

               
Conread position:
               
140-382
               

               
Cow position:
               
chrX:30962871-30963106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
236, 13
               

               
Conread position:
               
140-384
               

               
Cow position:
               
chrX:11856431-11856195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
140-388
               

               
Cow position:
               
chrX:7509146-7508897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
67, 77
               

               
Conread position:
               
140-388
               

               
Cow position:
               
chrX:26875878-26876121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
12, 98
               

               
Conread position:
               
140-391
               

               
Cow position:
               
chrX:678566-678811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
140-395
               

               
Cow position:
               
chrX:17888415-17888652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
236, 54
               

               
Conread position:
               
140-398
               

               
Cow position:
               
chrX:19690221-19689968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
140-399
               

               
Cow position:
               
chrX:24365820-24366080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 128
               

               
Conread position:
               
140-403
               

               
Cow position:
               
chrX:30763417-30763677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
96, 140
               

               
Conread position:
               
140-405
               

               
Cow position:
               
chrX:10096033-10095766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
140-407
               

               
Cow position:
               
chrX:2786552-2786808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
140-407
               

               
Cow position:
               
chrX:5046892-5047159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 109
               

               
Conread position:
               
140-407
               

               
Cow position:
               
chrX:13385417-13385145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
140-407
               

               
Cow position:
               
chrX:23024708-23024442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
254, 21
               

               
Conread position:
               
140-407
               

               
Cow position:
               
chrX:32747688-32747396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
140-407
               

               
Cow position:
               
chrX:40269492-40269214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 97
               

               
Conread position:
               
140-408
               

               
Cow position:
               
chrX:488496-488227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
70, 98
               

               
Conread position:
               
140-408
               

               
Cow position:
               
chrX:41238349-41238626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
91, 51
               

               
Conread position:
               
140-413
               

               
Cow position:
               
chrX:878377-878636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
15, 64
               

               
Conread position:
               
140-413
               

               
Cow position:
               
chrX:7277916-7277662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
118, 9
               

               
Conread position:
               
140-413
               

               
Cow position:
               
chrX:16762774-16762504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
140-413
               

               
Cow position:
               
chrX:35609993-35609718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 138
               

               
Conread position:
               
140-420
               

               
Cow position:
               
chrX:13785359-13785639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
154, 97
               

               
Conread position:
               
140-422
               

               
Cow position:
               
chrX:6278495-6278777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 260
               

               
Conread position:
               
141-289
               

               
Cow position:
               
chrX:11614704-11614555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
141-314
               

               
Cow position:
               
chrX:47186318-47186486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 52
               

               
Conread position:
               
141-316
               

               
Cow position:
               
chrX:4399128-4398958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
141-316
               

               
Cow position:
               
chrX:6407547-6407381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
141-320
               

               
Cow position:
               
chrX:35885726-35885901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chrX:16514260-16514443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chrX:36061161-36060973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
141-352
               

               
Cow position:
               
chrX:29544871-29545083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
19, 161
               

               
Conread position:
               
141-360
               

               
Cow position:
               
chrX:842162-841947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
76, 20
               

               
Conread position:
               
141-371
               

               
Cow position:
               
chrX:45993231-45992990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
141-375
               

               
Cow position:
               
chrX:1728425-1728643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
141-375
               

               
Cow position:
               
chrX:13245600-13245365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
141-375
               

               
Cow position:
               
chrX:44397021-44396789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
156, 89
               

               
Conread position:
               
141-376
               

               
Cow position:
               
chrX:4043857-4044077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
141-381
               

               
Cow position:
               
chrX:42338943-42339169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
235, 41
               

               
Conread position:
               
141-382
               

               
Cow position:
               
chrX:48010605-48010360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
141-384
               

               
Cow position:
               
chrX:15815088-15814861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
235, 56
               

               
Conread position:
               
141-385
               

               
Cow position:
               
chrX:6690254-6690485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
141-388
               

               
Cow position:
               
chrX:38935282-38935041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
141-389
               

               
Cow position:
               
chrX:11982140-11981890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 93
               

               
Conread position:
               
141-390
               

               
Cow position:
               
chrX:47232833-47232595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
141-398
               

               
Cow position:
               
chrX:917362-917620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 83
               

               
Conread position:
               
141-398
               

               
Cow position:
               
chrX:3653761-3653513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
176, 8
               

               
Conread position:
               
141-398
               

               
Cow position:
               
chrX:25035376-25035637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 217
               

               
Conread position:
               
141-398
               

               
Cow position:
               
chrX:31948934-31949181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 59
               

               
Conread position:
               
141-398
               

               
Cow position:
               
chrX:40557677-40557926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 97
               

               
Conread position:
               
141-398
               

               
Cow position:
               
chrX:42589755-42590008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
141-398
               

               
Cow position:
               
chrX:46722733-46722991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
141-399
               

               
Cow position:
               
chrX:29226481-29226225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
233, 12
               

               
Conread position:
               
141-399
               

               
Cow position:
               
chrX:32170884-32171133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
93, 68
               

               
Conread position:
               
141-407
               

               
Cow position:
               
chrX:7053727-7053997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
96, 205
               

               
Conread position:
               
141-407
               

               
Cow position:
               
chrX:41878929-41879193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 59
               

               
Conread position:
               
141-408
               

               
Cow position:
               
chrX:46032718-46032981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
89, 20
               

               
Conread position:
               
141-413
               

               
Cow position:
               
chrX:9252160-9252442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
141-413
               

               
Cow position:
               
chrX:12290724-12290468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
141-413
               

               
Cow position:
               
chrX:24287925-24288181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
120, 36
               

               
Conread position:
               
141-413
               

               
Cow position:
               
chrX:47344297-47344026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 68
               

               
Conread position:
               
141-414
               

               
Cow position:
               
chrX:2467885-2467611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
142-280
               

               
Cow position:
               
chrX:41027159-41027022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
142-355
               

               
Cow position:
               
chrX:36961644-36961428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
142-358
               

               
Cow position:
               
chrX:6234450-6234658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
142-373
               

               
Cow position:
               
chrX:17042695-17042466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
77, 86
               

               
Conread position:
               
142-386
               

               
Cow position:
               
chrX:27680397-27680165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
234, 59
               

               
Conread position:
               
142-387
               

               
Cow position:
               
chrX:11675064-11674825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
142-388
               

               
Cow position:
               
chrX:21004683-21004444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
142-388
               

               
Cow position:
               
chrX:33493779-33493535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
234, 83
               

               
Conread position:
               
142-404
               

               
Cow position:
               
chrX:38840891-38840632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
82, 72
               

               
Conread position:
               
142-406
               

               
Cow position:
               
chrX:35413623-35413369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
48, 87
               

               
Conread position:
               
142-407
               

               
Cow position:
               
chrX:30922186-30921923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
142-407
               

               
Cow position:
               
chrX:34441449-34441709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 137
               

               
Conread position:
               
142-407
               

               
Cow position:
               
chrX:40647989-40647716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 96
               

               
Conread position:
               
142-410
               

               
Cow position:
               
chrX:37764191-37764462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
232, 11
               

               
Conread position:
               
142-413
               

               
Cow position:
               
chrX:5872321-5872048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 35
               

               
Conread position:
               
142-413
               

               
Cow position:
               
chrX:25238172-25237910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 25
               

               
Conread position:
               
142-413
               

               
Cow position:
               
chrX:29289582-29289308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
143-335
               

               
Cow position:
               
chrX:31312030-31311839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
143-372
               

               
Cow position:
               
chrX:1499666-1499446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
143-375
               

               
Cow position:
               
chrX:35542896-35542665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 64
               

               
Conread position:
               
143-375
               

               
Cow position:
               
chrX:36197971-36197741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
143-376
               

               
Cow position:
               
chrX:5900470-5900230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
106, 198
               

               
Conread position:
               
143-392
               

               
Cow position:
               
chrX:11806012-11806261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
233, 94
               

               
Conread position:
               
143-398
               

               
Cow position:
               
chrX:45373289-45373542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
143-404
               

               
Cow position:
               
chrX:45502146-45501889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 59
               

               
Conread position:
               
143-407
               

               
Cow position:
               
chrX:20339890-20340153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 29
               

               
Conread position:
               
143-407
               

               
Cow position:
               
chrX:37232414-37232150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 94
               

               
Conread position:
               
143-407
               

               
Cow position:
               
chrX:48800535-48800275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
143-408
               

               
Cow position:
               
chrX:35387900-35388170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
143-413
               

               
Cow position:
               
chrX:22813067-22812794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
143-413
               

               
Cow position:
               
chrX:42171293-42171564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
144-282
               

               
Cow position:
               
chrX:11085058-11085194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
144-324
               

               
Cow position:
               
chrX:18485798-18485619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
144-375
               

               
Cow position:
               
chrX:14900729-14900947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
144-385
               

               
Cow position:
               
chrX:17662592-17662834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
144-386
               

               
Cow position:
               
chrX:19019105-19019348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
144-389
               

               
Cow position:
               
chrX:8558461-8558704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 64
               

               
Conread position:
               
144-398
               

               
Cow position:
               
chrX:5638168-5638419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 65
               

               
Conread position:
               
144-398
               

               
Cow position:
               
chrX:45393119-45393367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 17
               

               
Conread position:
               
144-402
               

               
Cow position:
               
chrX:9161587-9161334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
144-407
               

               
Cow position:
               
chrX:1331940-1331670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
144-407
               

               
Cow position:
               
chrX:7695751-7695501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
7, 137
               

               
Conread position:
               
144-407
               

               
Cow position:
               
chrX:24318064-24317804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
232, 19
               

               
Conread position:
               
144-408
               

               
Cow position:
               
chrX:34502922-34502660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 93
               

               
Conread position:
               
144-408
               

               
Cow position:
               
chrX:38227092-38227353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
144-413
               

               
Cow position:
               
chrX:7718854-7718588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 49
               

               
Conread position:
               
144-413
               

               
Cow position:
               
chrX:42874984-42874710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 217
               

               
Conread position:
               
145-316
               

               
Cow position:
               
chrX:23667124-23666955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 134
               

               
Conread position:
               
145-333
               

               
Cow position:
               
chrX:36068014-36067835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chrX:42247187-42247444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
148-351
               

               
Cow position:
               
chrX:18216282-18216074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
148-380
               

               
Cow position:
               
chrX:36975946-36975717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
84, 61
               

               
Conread position:
               
148-388
               

               
Cow position:
               
chrX:41403975-41403735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
86, 222
               

               
Conread position:
               
148-388
               

               
Cow position:
               
chrX:41410523-41410283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
86, 222
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chrX:27705582-27705330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chrX:47379472-47379730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
59, 98
               

               
Conread position:
               
148-413
               

               
Cow position:
               
chrX:34454661-34454401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
86, 50
               

               
Conread position:
               
149-316
               

               
Cow position:
               
chrX:14003645-14003812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
149-331
               

               
Cow position:
               
chrX:32821025-32820847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
89, 129
               

               
Conread position:
               
149-363
               

               
Cow position:
               
chrX:34411837-34411625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
201, 88
               

               
Conread position:
               
149-365
               

               
Cow position:
               
chrX:40567597-40567383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
89, 44
               

               
Conread position:
               
149-380
               

               
Cow position:
               
chrX:17231728-17231502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 59
               

               
Conread position:
               
149-386
               

               
Cow position:
               
chrX:42492522-42492748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
86, 49
               

               
Conread position:
               
149-398
               

               
Cow position:
               
chrX:32743530-32743288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
70, 79
               

               
Conread position:
               
149-398
               

               
Cow position:
               
chrX:45674842-45674594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
227, 14
               

               
Conread position:
               
149-407
               

               
Cow position:
               
chrX:14883963-14884226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 79
               

               
Conread position:
               
149-407
               

               
Cow position:
               
chrX:28134341-28134087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 90
               

               
Conread position:
               
149-408
               

               
Cow position:
               
chrX:21665599-21665856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
149-408
               

               
Cow position:
               
chrX:27442559-27442815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
149-413
               

               
Cow position:
               
chrX:15485630-15485893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 12
               

               
Conread position:
               
149-413
               

               
Cow position:
               
chrX:42469951-42470205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
225, 34
               

               
Conread position:
               
149-413
               

               
Cow position:
               
chrX:43527505-43527235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 136
               

               
Conread position:
               
150-305
               

               
Cow position:
               
chrX:48385363-48385520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
150-316
               

               
Cow position:
               
chrX:30222125-30221959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-367
               

               
Cow position:
               
chrX:37574838-37574638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
150-385
               

               
Cow position:
               
chrX:16689491-16689258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
229, 219
               

               
Conread position:
               
150-389
               

               
Cow position:
               
chrX:21663299-21663068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
80, 52
               

               
Conread position:
               
150-389
               

               
Cow position:
               
chrX:47756934-47757170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
150-392
               

               
Cow position:
               
chrX:11656086-11655842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 89
               

               
Conread position:
               
150-397
               

               
Cow position:
               
chrX:44850676-44850925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
150-398
               

               
Cow position:
               
chrX:4996590-4996361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
224, 35
               

               
Conread position:
               
150-398
               

               
Cow position:
               
chrX:23299953-23299704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
226, 0
               

               
Conread position:
               
150-398
               

               
Cow position:
               
chrX:43984172-43983921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
88, 64
               

               
Conread position:
               
150-402
               

               
Cow position:
               
chrX:15037744-15037996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
226, 246
               

               
Conread position:
               
150-405
               

               
Cow position:
               
chrX:15545886-15545641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 43
               

               
Conread position:
               
150-407
               

               
Cow position:
               
chrX:5288688-5288949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
87, 74
               

               
Conread position:
               
150-407
               

               
Cow position:
               
chrX:27498767-27498506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
226, 0
               

               
Conread position:
               
150-407
               

               
Cow position:
               
chrX:30141319-30141587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
150-407
               

               
Cow position:
               
chrX:38102448-38102706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
226, 75
               

               
Conread position:
               
150-408
               

               
Cow position:
               
chrX:12826741-12826484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
189, 59
               

               
Conread position:
               
151-393
               

               
Cow position:
               
chrX:44736993-44737236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
152-388
               

               
Cow position:
               
chrX:43049341-43049102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
153-276
               

               
Cow position:
               
chrX:9365685-9365806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
153-286
               

               
Cow position:
               
chrX:21566395-21566261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
153-292
               

               
Cow position:
               
chrX:31294572-31294707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
125, 65
               

               
Conread position:
               
153-298
               

               
Cow position:
               
chrX:29680269-29680409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
153-306
               

               
Cow position:
               
chrX:36723099-36723252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
153-312
               

               
Cow position:
               
chrX:41068712-41068564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
153-316
               

               
Cow position:
               
chrX:22387251-22387415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
153-316
               

               
Cow position:
               
chrX:46433483-46433315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
153-325
               

               
Cow position:
               
chrX:47165893-47166061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
80, 64
               

               
Conread position:
               
153-330
               

               
Cow position:
               
chrX:7336819-7336645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
157, 16
               

               
Conread position:
               
153-340
               

               
Cow position:
               
chrX:43730231-43730406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
153-352
               

               
Cow position:
               
chrX:17908297-17908487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
153-367
               

               
Cow position:
               
chrX:48236810-48236593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
153-374
               

               
Cow position:
               
chrX:13265634-13265845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
153-374
               

               
Cow position:
               
chrX:28013456-28013665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
153-375
               

               
Cow position:
               
chrX:16789861-16790063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
153-375
               

               
Cow position:
               
chrX:37048586-37048807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
197, 76
               

               
Conread position:
               
153-378
               

               
Cow position:
               
chrX:35681332-35681116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
85, 127
               

               
Conread position:
               
153-379
               

               
Cow position:
               
chrX:18456392-18456161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
153-380
               

               
Cow position:
               
chrX:19841669-19841890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
176, 10
               

               
Conread position:
               
153-382
               

               
Cow position:
               
chrX:37489714-37489496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
153-382
               

               
Cow position:
               
chrX:46072829-46073055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
201, 84
               

               
Conread position:
               
153-382
               

               
Cow position:
               
chrX:47054536-47054761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
106, 126
               

               
Conread position:
               
153-383
               

               
Cow position:
               
chrX:21664731-21664957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 61
               

               
Conread position:
               
153-388
               

               
Cow position:
               
chrX:16416499-16416268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
153-388
               

               
Cow position:
               
chrX:22624464-22624241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
224, 49
               

               
Conread position:
               
153-388
               

               
Cow position:
               
chrX:23970367-23970149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
226, 41
               

               
Conread position:
               
153-388
               

               
Cow position:
               
chrX:31745071-31745287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
153-388
               

               
Cow position:
               
chrX:32310093-32309866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
221, 24
               

               
Conread position:
               
153-388
               

               
Cow position:
               
chrX:40540150-40540382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
226, 86
               

               
Conread position:
               
153-389
               

               
Cow position:
               
chrX:17630815-17631043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
223, 63
               

               
Conread position:
               
153-389
               

               
Cow position:
               
chrX:39558359-39558591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 84
               

               
Conread position:
               
153-389
               

               
Cow position:
               
chrX:42282419-42282195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
223, 75
               

               
Conread position:
               
153-390
               

               
Cow position:
               
chrX:32127999-32128220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
153-390
               

               
Cow position:
               
chrX:35284611-35284375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
208, 124
               

               
Conread position:
               
153-395
               

               
Cow position:
               
chrX:41674101-41673855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
153-397
               

               
Cow position:
               
chrX:1616053-1616300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 84
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chrX:7497231-7496995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
224, 63
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chrX:14973749-14973982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
165, 103
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chrX:28098103-28097875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
224, 51
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chrX:34991024-34990791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
221, 35
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chrX:38936688-38936449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
221, 75
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chrX:42587437-42587679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
223, 65
               

               
Conread position:
               
153-399
               

               
Cow position:
               
chrX:14599523-14599282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
153-399
               

               
Cow position:
               
chrX:28878177-28878413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
153-401
               

               
Cow position:
               
chrX:24259592-24259830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
221, 54
               

               
Conread position:
               
153-406
               

               
Cow position:
               
chrX:25419166-25419421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 61
               

               
Conread position:
               
153-407
               

               
Cow position:
               
chrX:1810172-1810423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
153-407
               

               
Cow position:
               
chrX:7351292-7351040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 166
               

               
Conread position:
               
153-407
               

               
Cow position:
               
chrX:8925692-8925444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 76
               

               
Conread position:
               
153-407
               

               
Cow position:
               
chrX:10411995-10412248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 54
               

               
Conread position:
               
153-407
               

               
Cow position:
               
chrX:14924992-14924738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 134
               

               
Conread position:
               
153-407
               

               
Cow position:
               
chrX:15007158-15007413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 148
               

               
Conread position:
               
153-407
               

               
Cow position:
               
chrX:19188929-19188674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 107
               

               
Conread position:
               
153-408
               

               
Cow position:
               
chrX:47481793-47481535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
83, 120
               

               
Conread position:
               
153-410
               

               
Cow position:
               
chrX:44054797-44054539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
84, 10
               

               
Conread position:
               
153-413
               

               
Cow position:
               
chrX:12116037-12115773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
83, 140
               

               
Conread position:
               
153-413
               

               
Cow position:
               
chrX:20887654-20887912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
153-413
               

               
Cow position:
               
chrX:26492998-26492734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
223, 0
               

               
Conread position:
               
153-413
               

               
Cow position:
               
chrX:31489509-31489244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
153-413
               

               
Cow position:
               
chrX:34238706-34238453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 49
               

               
Conread position:
               
154-335
               

               
Cow position:
               
chrX:44656971-44657151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
86, 115
               

               
Conread position:
               
154-407
               

               
Cow position:
               
chrX:630318-630559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
156-297
               

               
Cow position:
               
chrX:12405395-12405539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
156-335
               

               
Cow position:
               
chrX:42235540-42235720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
114, 73
               

               
Conread position:
               
156-335
               

               
Cow position:
               
chrX:48035415-48035241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
156-367
               

               
Cow position:
               
chrX:20791829-20792036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
5, 61
               

               
Conread position:
               
156-374
               

               
Cow position:
               
chrX:4750316-4750523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
156-376
               

               
Cow position:
               
chrX:37910430-37910226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
156-380
               

               
Cow position:
               
chrX:38549435-38549216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 69
               

               
Conread position:
               
156-384
               

               
Cow position:
               
chrX:30420949-30421175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
138, 37
               

               
Conread position:
               
156-387
               

               
Cow position:
               
chrX:45598613-45598843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
218, 83
               

               
Conread position:
               
156-388
               

               
Cow position:
               
chrX:619016-619248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 81
               

               
Conread position:
               
156-388
               

               
Cow position:
               
chrX:1514422-1514638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
156-388
               

               
Cow position:
               
chrX:11455059-11455292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
57, 133
               

               
Conread position:
               
156-388
               

               
Cow position:
               
chrX:26625688-26625917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
103, 46
               

               
Conread position:
               
156-392
               

               
Cow position:
               
chrX:45174836-45174600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
143, 60
               

               
Conread position:
               
156-398
               

               
Cow position:
               
chrX:38094533-38094775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 165
               

               
Conread position:
               
156-398
               

               
Cow position:
               
chrX:45694090-45693856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
221, 46
               

               
Conread position:
               
156-406
               

               
Cow position:
               
chrX:8731075-8730818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
156-406
               

               
Cow position:
               
chrX:45412671-45412913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
102, 54
               

               
Conread position:
               
156-407
               

               
Cow position:
               
chrX:13177480-13177726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
227, 43
               

               
Conread position:
               
156-413
               

               
Cow position:
               
chrX:754951-754690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 0
               

               
Conread position:
               
156-413
               

               
Cow position:
               
chrX:8900016-8899756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
156-413
               

               
Cow position:
               
chrX:10865879-10866135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
218, 122
               

               
Conread position:
               
156-413
               

               
Cow position:
               
chrX:34565269-34565032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
220, 67
               

               
Conread position:
               
156-413
               

               
Cow position:
               
chrX:37836578-37836321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 108
               

               
Conread position:
               
156-414
               

               
Cow position:
               
chrX:34754201-34754461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 37
               

               
Conread position:
               
156-419
               

               
Cow position:
               
chrX:157786-158041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
60, 72
               

               
Conread position:
               
157-284
               

               
Cow position:
               
chrX:37955818-37955694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
157-324
               

               
Cow position:
               
chrX:29563391-29563546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
157-331
               

               
Cow position:
               
chrX:45759379-45759215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 50
               

               
Conread position:
               
157-367
               

               
Cow position:
               
chrX:36283339-36283127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
157-370
               

               
Cow position:
               
chrX:11633667-11633457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
83, 123
               

               
Conread position:
               
157-375
               

               
Cow position:
               
chrX:36922631-36922421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
152, 36
               

               
Conread position:
               
157-383
               

               
Cow position:
               
chrX:27514856-27514633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
157-384
               

               
Cow position:
               
chrX:46532514-46532745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 201
               

               
Conread position:
               
157-385
               

               
Cow position:
               
chrX:4768729-4768513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
157-388
               

               
Cow position:
               
chrX:27394035-27394254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
219, 27
               

               
Conread position:
               
157-389
               

               
Cow position:
               
chrX:30832862-30833079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
219, 31
               

               
Conread position:
               
157-398
               

               
Cow position:
               
chrX:28157485-28157235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 64
               

               
Conread position:
               
157-398
               

               
Cow position:
               
chrX:30543301-30543532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
219, 72
               

               
Conread position:
               
157-398
               

               
Cow position:
               
chrX:38439465-38439223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 80
               

               
Conread position:
               
157-399
               

               
Cow position:
               
chrX:7646240-7646007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
196, 28
               

               
Conread position:
               
157-406
               

               
Cow position:
               
chrX:27446683-27446430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
157-407
               

               
Cow position:
               
chrX:15147200-15147448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 120
               

               
Conread position:
               
157-407
               

               
Cow position:
               
chrX:28866017-28866251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
157-407
               

               
Cow position:
               
chrX:42461757-42462010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 73
               

               
Conread position:
               
157-408
               

               
Cow position:
               
chrX:21593275-21593023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 0
               

               
Conread position:
               
158-307
               

               
Cow position:
               
chrX:36356099-36355957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chrX:47454116-47453917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 103
               

               
Conread position:
               
158-386
               

               
Cow position:
               
chrX:41166978-41167202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 121
               

               
Conread position:
               
158-388
               

               
Cow position:
               
chrX:12249786-12249565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
197, 14
               

               
Conread position:
               
158-388
               

               
Cow position:
               
chrX:33855248-33855473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
218, 10
               

               
Conread position:
               
158-393
               

               
Cow position:
               
chrX:3654594-3654359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
218, 79
               

               
Conread position:
               
158-399
               

               
Cow position:
               
chrX:25815922-25816147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
218, 35
               

               
Conread position:
               
158-404
               

               
Cow position:
               
chrX:20151836-20151591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 123
               

               
Conread position:
               
158-405
               

               
Cow position:
               
chrX:42588682-42588930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 123
               

               
Conread position:
               
159-284
               

               
Cow position:
               
chrX:616277-616401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
159-301
               

               
Cow position:
               
chrX:20584309-20584166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
106, 70
               

               
Conread position:
               
159-316
               

               
Cow position:
               
chrX:34792323-34792478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
159-335
               

               
Cow position:
               
chrX:31256851-31256681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
159-356
               

               
Cow position:
               
chrX:46315392-46315588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
159-357
               

               
Cow position:
               
chrX:45110641-45110447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chrX:8039807-8039598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 64
               

               
Conread position:
               
159-375
               

               
Cow position:
               
chrX:42381117-42381326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
76, 48
               

               
Conread position:
               
159-375
               

               
Cow position:
               
chrX:48684239-48684449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
15, 121
               

               
Conread position:
               
159-389
               

               
Cow position:
               
chrX:9416707-9416934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
159-392
               

               
Cow position:
               
chrX:20677356-20677121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
113, 90
               

               
Conread position:
               
159-395
               

               
Cow position:
               
chrX:27431929-27432166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 78
               

               
Conread position:
               
159-397
               

               
Cow position:
               
chrX:11073208-11073440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 22
               

               
Conread position:
               
159-398
               

               
Cow position:
               
chrX:13647801-13648034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
217, 22
               

               
Conread position:
               
159-398
               

               
Cow position:
               
chrX:42086842-42086612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
218, 50
               

               
Conread position:
               
159-408
               

               
Cow position:
               
chrX:12309401-12309651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 18
               

               
Conread position:
               
159-408
               

               
Cow position:
               
chrX:23583545-23583295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
215, 34
               

               
Conread position:
               
159-408
               

               
Cow position:
               
chrX:26440793-26441043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 104
               

               
Conread position:
               
159-413
               

               
Cow position:
               
chrX:10306659-10306405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
159-413
               

               
Cow position:
               
chrX:35042210-35041954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
159-413
               

               
Cow position:
               
chrX:42507658-42507912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
160-341
               

               
Cow position:
               
chrX:37541108-37540932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 28
               

               
Conread position:
               
160-348
               

               
Cow position:
               
chrX:4091632-4091448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 114
               

               
Conread position:
               
160-358
               

               
Cow position:
               
chrX:47046522-47046729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
160-373
               

               
Cow position:
               
chrX:36840854-36840649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
139, 42
               

               
Conread position:
               
160-374
               

               
Cow position:
               
chrX:41083910-41083700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
160-375
               

               
Cow position:
               
chrX:7425453-7425238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
160-379
               

               
Cow position:
               
chrX:22822033-22821816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
160-380
               

               
Cow position:
               
chrX:2383473-2383257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
107, 69
               

               
Conread position:
               
160-385
               

               
Cow position:
               
chrX:2648369-2648587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
47, 58
               

               
Conread position:
               
160-385
               

               
Cow position:
               
chrX:27771979-27772193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
217, 12
               

               
Conread position:
               
160-388
               

               
Cow position:
               
chrX:2029376-2029150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
46, 55
               

               
Conread position:
               
160-388
               

               
Cow position:
               
chrX:32420202-32419970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
99, 12
               

               
Conread position:
               
160-393
               

               
Cow position:
               
chrX:33803022-33803258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
160-406
               

               
Cow position:
               
chrX:15139561-15139803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 68
               

               
Conread position:
               
160-407
               

               
Cow position:
               
chrX:4632867-4633114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
160-407
               

               
Cow position:
               
chrX:20376952-20376708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 121
               

               
Conread position:
               
160-407
               

               
Cow position:
               
chrX:30162981-30162735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
62, 78
               

               
Conread position:
               
160-407
               

               
Cow position:
               
chrX:35273339-35273082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
172, 47
               

               
Conread position:
               
160-407
               

               
Cow position:
               
chrX:35409644-35409406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
160-407
               

               
Cow position:
               
chrX:40183359-40183612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
160-408
               

               
Cow position:
               
chrX:20697623-20697866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
160-408
               

               
Cow position:
               
chrX:32020135-32020381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 121
               

               
Conread position:
               
160-408
               

               
Cow position:
               
chrX:33466594-33466354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
214, 63
               

               
Conread position:
               
160-413
               

               
Cow position:
               
chrX:12018276-12018007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 150
               

               
Conread position:
               
160-413
               

               
Cow position:
               
chrX:40452225-40452481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 77
               

               
Conread position:
               
161-284
               

               
Cow position:
               
chrX:18204478-18204602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chrX:44063737-44063927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
161-388
               

               
Cow position:
               
chrX:8681944-8682170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
51, 71
               

               
Conread position:
               
161-398
               

               
Cow position:
               
chrX:40826768-40826997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
72, 110
               

               
Conread position:
               
161-398
               

               
Cow position:
               
chrX:47145073-47144832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
139, 68
               

               
Conread position:
               
161-407
               

               
Cow position:
               
chrX:28846898-28847138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 102
               

               
Conread position:
               
161-408
               

               
Cow position:
               
chrX:41790462-41790703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
213, 46
               

               
Conread position:
               
161-410
               

               
Cow position:
               
chrX:39555854-39556081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
215, 41
               

               
Conread position:
               
161-413
               

               
Cow position:
               
chrX:21064265-21064018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
161-413
               

               
Cow position:
               
chrX:33020467-33020218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
162-341
               

               
Cow position:
               
chrX:45874981-45874806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
162-375
               

               
Cow position:
               
chrX:1978493-1978279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
162-382
               

               
Cow position:
               
chrX:877051-877257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
214, 11
               

               
Conread position:
               
162-388
               

               
Cow position:
               
chrX:42011261-42011040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
215, 52
               

               
Conread position:
               
162-389
               

               
Cow position:
               
chrX:19930633-19930416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
215, 42
               

               
Conread position:
               
162-408
               

               
Cow position:
               
chrX:25338167-25337914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
162-413
               

               
Cow position:
               
chrX:28105902-28105654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
234, 75
               

               
Conread position:
               
162-413
               

               
Cow position:
               
chrX:37843703-37843452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
162-413
               

               
Cow position:
               
chrX:40480886-40481141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 181
               

               
Conread position:
               
163-357
               

               
Cow position:
               
chrX:18195916-18195733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
75, 44
               

               
Conread position:
               
163-398
               

               
Cow position:
               
chrX:36249880-36250112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
214, 116
               

               
Conread position:
               
163-399
               

               
Cow position:
               
chrX:9997354-9997584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 65
               

               
Conread position:
               
163-407
               

               
Cow position:
               
chrX:15119903-15120151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
163-407
               

               
Cow position:
               
chrX:17271305-17271551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
163-407
               

               
Cow position:
               
chrX:21833871-21833623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
163-407
               

               
Cow position:
               
chrX:38218689-38218456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 21
               

               
Conread position:
               
163-407
               

               
Cow position:
               
chrX:41157297-41157049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
163-410
               

               
Cow position:
               
chrX:23571814-23572065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
163-413
               

               
Cow position:
               
chrX:5376356-5376101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
163-413
               

               
Cow position:
               
chrX:6674939-6675193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
84, 10
               

               
Conread position:
               
164-288
               

               
Cow position:
               
chrX:29723722-29723598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
164-327
               

               
Cow position:
               
chrX:9770696-9770863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
164-344
               

               
Cow position:
               
chrX:47484285-47484467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
164-346
               

               
Cow position:
               
chrX:40809669-40809489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 125
               

               
Conread position:
               
164-361
               

               
Cow position:
               
chrX:27174977-27174782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
164-374
               

               
Cow position:
               
chrX:21642498-21642703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
164-376
               

               
Cow position:
               
chrX:45566616-45566403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
150, 40
               

               
Conread position:
               
164-388
               

               
Cow position:
               
chrX:25411821-25411600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
66, 83
               

               
Conread position:
               
164-407
               

               
Cow position:
               
chrX:24105604-24105364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
164-408
               

               
Cow position:
               
chrX:38967628-38967387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 96
               

               
Conread position:
               
164-410
               

               
Cow position:
               
chrX:24201167-24200933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
53, 74
               

               
Conread position:
               
166-316
               

               
Cow position:
               
chrX:23340987-23341135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
166-317
               

               
Cow position:
               
chrX:10128987-10128836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
166-375
               

               
Cow position:
               
chrX:27994273-27994483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 175
               

               
Conread position:
               
166-382
               

               
Cow position:
               
chrX:32330136-32329927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
166-387
               

               
Cow position:
               
chrX:776805-777033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
166-388
               

               
Cow position:
               
chrX:1104821-1105044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-388
               

               
Cow position:
               
chrX:46045024-46044804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
210, 27
               

               
Conread position:
               
166-393
               

               
Cow position:
               
chrX:42460164-42459935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
166-395
               

               
Cow position:
               
chrX:9572506-9572276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-395
               

               
Cow position:
               
chrX:9976419-9976189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-397
               

               
Cow position:
               
chrX:45424842-45425074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-398
               

               
Cow position:
               
chrX:16703653-16703420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
166-398
               

               
Cow position:
               
chrX:18118489-18118722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
166-398
               

               
Cow position:
               
chrX:25458654-25458887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:2160748-2160514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:4343732-4343498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:5423083-5423317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
171, 180
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:11664161-11663927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:12851115-12850881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 102
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:13971244-13971478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
179, 163
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:14121769-14122003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:15438670-15438900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 200
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:15531172-15531406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:16279632-16279398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:16466284-16466049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:17055552-17055318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:20021546-20021312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:22078310-22078076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
93, 101
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:22915449-22915215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:23386564-23386790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
210, 160
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:24757714-24757948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:24904067-24903833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:30822567-30822333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:30981182-30981416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:31977863-31978097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:38015077-38014843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:43979603-43979367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:45237449-45237215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chrX:46424771-46425003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
210, 112
               

               
Conread position:
               
166-401
               

               
Cow position:
               
chrX:18655822-18656058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-401
               

               
Cow position:
               
chrX:26759586-26759822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-401
               

               
Cow position:
               
chrX:35533834-35533598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-401
               

               
Cow position:
               
chrX:37816571-37816335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-402
               

               
Cow position:
               
chrX:16711937-16711700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-402
               

               
Cow position:
               
chrX:18244968-18244735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
210, 200
               

               
Conread position:
               
166-402
               

               
Cow position:
               
chrX:46578872-46579109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
166-405
               

               
Cow position:
               
chrX:30143302-30143545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chrX:2944885-2945129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chrX:10428522-10428278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chrX:22888642-22888397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chrX:23451186-23451432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chrX:28602932-28603175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
64, 197
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chrX:29084103-29083864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
210, 174
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chrX:30823499-30823255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:671026-671271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:1576280-1576525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:1749526-1749771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:1781889-1781643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:1975615-1975859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 10
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:2362482-2362237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:2417501-2417746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:2425139-2425384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:2478645-2478889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
227, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:2558981-2559222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
208, 62
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:2664992-2664747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:2812429-2812674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:2933702-2933460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
210, 160
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:2964032-2963788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 55
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:3388089-3387844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:3648836-3649070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
210, 41
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:4621971-4622216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:4905008-4905251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
210, 86
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:5123378-5123623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:5333838-5334082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
210, 188
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:5646121-5646366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:5739230-5739475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:5867128-5866884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
210, 137
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:6373164-6372919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 113
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:6567057-6566812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:6655284-6655529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:7311976-7311731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:7510119-7509875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 112
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:8530523-8530278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:8782727-8782482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:9018320-9018565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:9096648-9096405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
208, 100
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:9129039-9128794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:9168631-9168876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:10351844-10351599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:10496216-10495971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:10922588-10922833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:11860259-11860504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:12001164-12001409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:12032954-12032709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:12146077-12145833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 223
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:12347857-12347616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
210, 40
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:13448253-13448008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:14163174-14162929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:14846091-14846336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:15008451-15008694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 50
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:15094349-15094104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:15505274-15505029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:15577658-15577903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:15589892-15590134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
210, 97
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:15781564-15781319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:16289579-16289824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:16478885-16478640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:16783470-16783232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
210, 108
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:17605578-17605823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:17783482-17783237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:17995442-17995197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:18025022-18024777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:18461993-18462237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 59
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:18897672-18897913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 161
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:18949762-18950007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 40
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:19333186-19333431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:19473177-19473423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
171, 179
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:19494977-19495222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:19774497-19774742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 60
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:20030235-20029985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
84, 123
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:20099305-20099060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:20320785-20321029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
210, 187
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:20742969-20742724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:20877780-20878025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:21768786-21768542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:22537968-22538216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:22557484-22557239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:22608609-22608854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:22815924-22815679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:23047761-23047518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
208, 112
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:23109740-23109497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
208, 27
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:23122369-23122122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
103, 180
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:23140292-23140048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 73
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:23216090-23215845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:23235813-23235568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:23280986-23280744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
210, 97
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:23987227-23986982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:24509850-24509605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:25452525-25452287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
209, 62
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:25741131-25741376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:25945854-25946096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:26531941-26531696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:26709587-26709342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:27096093-27095857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
210, 16
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:27403963-27404208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:27422299-27422543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
210, 188
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:27469671-27469916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:27704270-27704515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:27759690-27759445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
171, 180
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:27761325-27761078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:27997629-27997388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
210, 176
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:28057812-28058057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:28555452-28555697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:29169351-29169596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:29356570-29356325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:30171727-30171972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:30228130-30228373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
210, 27
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:30816286-30816531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:30899404-30899649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:31202823-31202578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
171, 180
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:31449640-31449884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
208, 35
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:31605667-31605422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:31813906-31814151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
167, 179
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:32011014-32010769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:32038860-32039105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:34095544-34095299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:34175215-34175460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:34285080-34285325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:34333217-34333462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
180, 171
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:35240845-35240602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
210, 89
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:35498069-35497824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:35612562-35612806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
210, 219
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:36240378-36240133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:37060808-37061053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:37497464-37497709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:38051451-38051694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
210, 133
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:38230284-38230529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:38442945-38442700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:39667210-39667455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:39714532-39714287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:39731496-39731251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:40544625-40544872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:41413801-41414046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:42166058-42165813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:43767554-43767799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:44168326-44168571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:44387968-44387728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
210, 235
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:44558062-44557817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:45787109-45786868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
210, 61
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:45904161-45903916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:47608397-47608152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
183, 171
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chrX:48165506-48165261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
171, 179
               

               
Conread position:
               
166-408
               

               
Cow position:
               
chrX:16286192-16285946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 44
               

               
Conread position:
               
166-413
               

               
Cow position:
               
chrX:18194894-18194645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
210, 123
               

               
Conread position:
               
166-414
               

               
Cow position:
               
chrX:1946733-1946990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
166-417
               

               
Cow position:
               
chrX:5300875-5300619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
166-471
               

               
Cow position:
               
chrX:20579768-20580078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
82, 156
               

               
Conread position:
               
167-315
               

               
Cow position:
               
chrX:22866599-22866747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
167-316
               

               
Cow position:
               
chrX:22921297-22921146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
48, 138
               

               
Conread position:
               
167-372
               

               
Cow position:
               
chrX:16541694-16541899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 187
               

               
Conread position:
               
167-397
               

               
Cow position:
               
chrX:21011339-21011571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
167-401
               

               
Cow position:
               
chrX:27106240-27106005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
167-407
               

               
Cow position:
               
chrX:14819696-14819450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
128, 180
               

               
Conread position:
               
167-407
               

               
Cow position:
               
chrX:16714178-16713935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
209, 57
               

               
Conread position:
               
167-407
               

               
Cow position:
               
chrX:21785745-21785505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
151, 106
               

               
Conread position:
               
167-407
               

               
Cow position:
               
chrX:26276121-26275877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
167-407
               

               
Cow position:
               
chrX:32583831-32584075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
167-413
               

               
Cow position:
               
chrX:21416075-21415820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
168-405
               

               
Cow position:
               
chrX:9635209-9635439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
207, 52
               

               
Conread position:
               
168-407
               

               
Cow position:
               
chrX:24441266-24441509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
168-419
               

               
Cow position:
               
chrX:36778387-36778133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 9
               

               
Conread position:
               
169-389
               

               
Cow position:
               
chrX:34662872-34663080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
64, 94
               

               
Conread position:
               
169-407
               

               
Cow position:
               
chrX:30454642-30454884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
169-408
               

               
Cow position:
               
chrX:45658104-45658343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
146, 58
               

               
Conread position:
               
170-335
               

               
Cow position:
               
chrX:7863596-7863757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
170-335
               

               
Cow position:
               
chrX:24149615-24149453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
170-398
               

               
Cow position:
               
chrX:24424414-24424643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
206, 67
               

               
Conread position:
               
170-398
               

               
Cow position:
               
chrX:35258755-35258978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
170-398
               

               
Cow position:
               
chrX:39559673-39559902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 185
               

               
Conread position:
               
170-399
               

               
Cow position:
               
chrX:4869522-4869292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
170-399
               

               
Cow position:
               
chrX:29066416-29066190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
204, 117
               

               
Conread position:
               
170-407
               

               
Cow position:
               
chrX:47385954-47386193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
206, 17
               

               
Conread position:
               
171-388
               

               
Cow position:
               
chrX:2206579-2206784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
205, 11
               

               
Conread position:
               
173-316
               

               
Cow position:
               
chrX:25207870-25208014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
173-335
               

               
Cow position:
               
chrX:23785634-23785467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
173-375
               

               
Cow position:
               
chrX:4482939-4482736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
173-388
               

               
Cow position:
               
chrX:46984526-46984742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 29
               

               
Conread position:
               
173-398
               

               
Cow position:
               
chrX:45043531-45043308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
173-408
               

               
Cow position:
               
chrX:1176008-1176237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
201, 64
               

               
Conread position:
               
173-413
               

               
Cow position:
               
chrX:7178869-7178644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
204, 33
               

               
Conread position:
               
173-413
               

               
Cow position:
               
chrX:11581917-11581666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
11, 92
               

               
Conread position:
               
173-413
               

               
Cow position:
               
chrX:38071793-38072035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
95, 228
               

               
Conread position:
               
173-413
               

               
Cow position:
               
chrX:38577491-38577265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
204, 49
               

               
Conread position:
               
174-334
               

               
Cow position:
               
chrX:35383047-35383205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
175-315
               

               
Cow position:
               
chrX:27145592-27145457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
175-385
               

               
Cow position:
               
chrX:40116390-40116188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
202, 62
               

               
Conread position:
               
175-386
               

               
Cow position:
               
chrX:44731567-44731356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
199, 62
               

               
Conread position:
               
175-389
               

               
Cow position:
               
chrX:24234506-24234719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
201, 80
               

               
Conread position:
               
175-394
               

               
Cow position:
               
chrX:27590065-27590286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
175-398
               

               
Cow position:
               
chrX:31260658-31260881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
201, 44
               

               
Conread position:
               
175-407
               

               
Cow position:
               
chrX:19022335-19022571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
201, 0
               

               
Conread position:
               
175-407
               

               
Cow position:
               
chrX:20801744-20801516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
194, 62
               

               
Conread position:
               
175-407
               

               
Cow position:
               
chrX:22578188-22578423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
175-458
               

               
Cow position:
               
chrX:36931289-36931001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
177-352
               

               
Cow position:
               
chrX:10252214-10252385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
177-407
               

               
Cow position:
               
chrX:6493701-6493470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
219, 69
               

               
Conread position:
               
177-407
               

               
Cow position:
               
chrX:16706774-16706540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
199, 0
               

               
Conread position:
               
177-407
               

               
Cow position:
               
chrX:16853413-16853651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
177-407
               

               
Cow position:
               
chrX:20945532-20945306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
199, 51
               

               
Conread position:
               
177-407
               

               
Cow position:
               
chrX:32188391-32188621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
137, 95
               

               
Conread position:
               
177-413
               

               
Cow position:
               
chrX:46770992-46771240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
180-413
               

               
Cow position:
               
chrX:4123802-4123567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
180-413
               

               
Cow position:
               
chrX:44834845-44835084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
183-320
               

               
Cow position:
               
chrX:41271246-41271379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
183-355
               

               
Cow position:
               
chrX:16996463-16996300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
183-363
               

               
Cow position:
               
chrX:12979863-12980045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
183-388
               

               
Cow position:
               
chrX:38642223-38642020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
183-398
               

               
Cow position:
               
chrX:22482725-22482939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 45
               

               
Conread position:
               
183-407
               

               
Cow position:
               
chrX:30179960-30180188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
183-408
               

               
Cow position:
               
chrX:37072368-37072143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
194, 11
               

               
Conread position:
               
184-349
               

               
Cow position:
               
chrX:45149141-45148974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
184-407
               

               
Cow position:
               
chrX:35937120-35937331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
185-356
               

               
Cow position:
               
chrX:4825861-4826035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
185-365
               

               
Cow position:
               
chrX:46429899-46430075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
175, 43
               

               
Conread position:
               
185-375
               

               
Cow position:
               
chrX:7513473-7513290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
186-354
               

               
Cow position:
               
chrX:29770215-29770384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
186-364
               

               
Cow position:
               
chrX:10123385-10123562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
186-373
               

               
Cow position:
               
chrX:16324006-16324187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
52, 83
               

               
Conread position:
               
186-386
               

               
Cow position:
               
chrX:17794941-17794747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
190, 51
               

               
Conread position:
               
186-387
               

               
Cow position:
               
chrX:11938969-11939163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
190, 42
               

               
Conread position:
               
186-388
               

               
Cow position:
               
chrX:9855263-9855060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
186-388
               

               
Cow position:
               
chrX:9954104-9953901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
186-388
               

               
Cow position:
               
chrX:34543746-34543547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
47, 101
               

               
Conread position:
               
186-398
               

               
Cow position:
               
chrX:7806338-7806127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
168, 10
               

               
Conread position:
               
186-399
               

               
Cow position:
               
chrX:4404495-4404284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
188, 38
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:1550913-1550688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:2274880-2274655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:9085370-9085595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:14222042-14221821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
143, 153
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:18223375-18223151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
190, 168
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:25288716-25288941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:27594219-27594442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
190, 202
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:27627318-27627093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:30021135-30021360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:30197260-30197035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chrX:48227650-48227877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
186-413
               

               
Cow position:
               
chrX:48248786-48248555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
187-407
               

               
Cow position:
               
chrX:19109079-19109303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
189-407
               

               
Cow position:
               
chrX:28517765-28517986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
187, 173
               

               
Conread position:
               
189-407
               

               
Cow position:
               
chrX:33764304-33764082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
190-383
               

               
Cow position:
               
chrX:22074754-22074565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
189, 47
               

               
Conread position:
               
190-387
               

               
Cow position:
               
chrX:4942800-4942988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
190-400
               

               
Cow position:
               
chrX:28111461-28111255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
190-408
               

               
Cow position:
               
chrX:45968114-45967899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
193-380
               

               
Cow position:
               
chrX:6640081-6639892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
45, 90
               

               
Conread position:
               
193-413
               

               
Cow position:
               
chrX:23061397-23061186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
184, 35
               

               
Conread position:
               
193-420
               

               
Cow position:
               
chrX:26883183-26883410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
183, 18
               

               
Conread position:
               
194-373
               

               
Cow position:
               
chrX:34385284-34385105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
194-375
               

               
Cow position:
               
chrX:19210443-19210622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
194-375
               

               
Cow position:
               
chrX:46372791-46372969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
194-388
               

               
Cow position:
               
chrX:13058535-13058340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
12, 16
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chrX:15994359-15994158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chrX:20653351-20653154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
194-398
               

               
Cow position:
               
chrX:16721854-16722052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
182, 22
               

               
Conread position:
               
194-398
               

               
Cow position:
               
chrX:35268832-35268640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
182, 43
               

               
Conread position:
               
194-398
               

               
Cow position:
               
chrX:37416122-37416325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
182, 84
               

               
Conread position:
               
194-398
               

               
Cow position:
               
chrX:46381826-46382026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
182, 65
               

               
Conread position:
               
194-407
               

               
Cow position:
               
chrX:21227425-21227210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
194-407
               

               
Cow position:
               
chrX:42855365-42855149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
195-407
               

               
Cow position:
               
chrX:32978308-32978519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
181, 18
               

               
Conread position:
               
197-388
               

               
Cow position:
               
chrX:42499077-42499269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
197-406
               

               
Cow position:
               
chrX:15596991-15596777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 164
               

               
Conread position:
               
198-347
               

               
Cow position:
               
chrX:43973510-43973360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
198-380
               

               
Cow position:
               
chrX:32623533-32623351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
198-390
               

               
Cow position:
               
chrX:5809143-5808950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
198-398
               

               
Cow position:
               
chrX:16734508-16734307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 145
               

               
Conread position:
               
198-398
               

               
Cow position:
               
chrX:46606562-46606760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
179, 152
               

               
Conread position:
               
198-407
               

               
Cow position:
               
chrX:11949546-11949755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
179, 94
               

               
Conread position:
               
198-407
               

               
Cow position:
               
chrX:18989850-18990062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
199-366
               

               
Cow position:
               
chrX:25036750-25036918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
40, 70
               

               
Conread position:
               
199-398
               

               
Cow position:
               
chrX:11820301-11820108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
200-406
               

               
Cow position:
               
chrX:44087254-44087043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
137, 145
               

               
Conread position:
               
200-407
               

               
Cow position:
               
chrX:35632807-35633015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 7
               

               
Conread position:
               
200-413
               

               
Cow position:
               
chrX:24125124-24125339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
176, 14
               

               
Conread position:
               
201-382
               

               
Cow position:
               
chrX:18812196-18812025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
201-407
               

               
Cow position:
               
chrX:29777989-29777780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
136, 86
               

               
Conread position:
               
203-407
               

               
Cow position:
               
chrX:37403076-37403285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
203-407
               

               
Cow position:
               
chrX:45467273-45467482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
206-390
               

               
Cow position:
               
chrX:21626007-21626194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
208-407
               

               
Cow position:
               
chrX:28646046-28646247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 94
               

               
Conread position:
               
209-389
               

               
Cow position:
               
chrX:20168144-20167963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
209-406
               

               
Cow position:
               
chrX:21795432-21795235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
209-412
               

               
Cow position:
               
chrX:46746630-46746422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
213-407
               

               
Cow position:
               
chrX:48489948-48490146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
214-356
               

               
Cow position:
               
chrX:46672674-46672814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 66
               

               
Conread position:
               
214-396
               

               
Cow position:
               
chrX:48536732-48536914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
162, 23
               

               
Conread position:
               
214-399
               

               
Cow position:
               
chrX:41733260-41733435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
214-407
               

               
Cow position:
               
chrX:48371030-48370834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
216-397
               

               
Cow position:
               
chrX:45787578-45787405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
216-398
               

               
Cow position:
               
chrX:6659311-6659123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
5, 110
               

               
Conread position:
               
216-398
               

               
Cow position:
               
chrX:18293858-18293682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
160, 21
               

               
Conread position:
               
216-402
               

               
Cow position:
               
chrX:25281534-25281721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 177
               

               
Conread position:
               
216-407
               

               
Cow position:
               
chrX:19290695-19290510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
160, 58
               

               
Conread position:
               
216-407
               

               
Cow position:
               
chrX:31556565-31556760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
217-398
               

               
Cow position:
               
chrX:7382251-7382073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
159, 61
               

               
Conread position:
               
217-407
               

               
Cow position:
               
chrX:40774540-40774730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
217-407
               

               
Cow position:
               
chrX:48211045-48211242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
219-388
               

               
Cow position:
               
chrX:15305362-15305528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
220-414
               

               
Cow position:
               
chrX:25283225-25283413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
178, 58
               

               
Conread position:
               
221-357
               

               
Cow position:
               
chrX:38114115-38113979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
221-366
               

               
Cow position:
               
chrX:2186185-2186041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 44
               

               
Conread position:
               
221-405
               

               
Cow position:
               
chrX:13429359-13429538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
155, 17
               

               
Conread position:
               
221-406
               

               
Cow position:
               
chrX:10566722-10566920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
221-406
               

               
Cow position:
               
chrX:41701844-41701660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
175, 145
               

               
Conread position:
               
221-407
               

               
Cow position:
               
chrX:25301827-25302010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
221-407
               

               
Cow position:
               
chrX:31473450-31473260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
135, 16
               

               
Conread position:
               
221-407
               

               
Cow position:
               
chrX:37299523-37299334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
105, 9
               

               
Conread position:
               
221-413
               

               
Cow position:
               
chrX:48676000-48675808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
155, 16
               

               
Conread position:
               
221-428
               

               
Cow position:
               
chrX:3161090-3161295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
125, 57
               

               
Conread position:
               
222-375
               

               
Cow position:
               
chrX:8827588-8827738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
222-388
               

               
Cow position:
               
chrX:23414437-23414608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 121
               

               
Conread position:
               
222-399
               

               
Cow position:
               
chrX:27324857-27325036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
222-406
               

               
Cow position:
               
chrX:2523803-2523991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
222-413
               

               
Cow position:
               
chrX:10916671-10916486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 17
               

               
Conread position:
               
222-413
               

               
Cow position:
               
chrX:33205072-33205260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
154, 41
               

               
Conread position:
               
223-399
               

               
Cow position:
               
chrX:5893154-5892977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
224-407
               

               
Cow position:
               
chrX:22811810-22811624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
153, 137
               

               
Conread position:
               
224-407
               

               
Cow position:
               
chrX:29049884-29049713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
152, 13
               

               
Conread position:
               
225-388
               

               
Cow position:
               
chrX:17933540-17933702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
154, 19
               

               
Conread position:
               
225-398
               

               
Cow position:
               
chrX:33886283-33886116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
225-407
               

               
Cow position:
               
chrX:23452674-23452860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
225-407
               

               
Cow position:
               
chrX:39549254-39549068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
225-407
               

               
Cow position:
               
chrX:48328463-48328649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
227-407
               

               
Cow position:
               
chrX:48204990-48205175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
230-382
               

               
Cow position:
               
chrX:33632095-33631942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
230-385
               

               
Cow position:
               
chrX:28856890-28856740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
147, 48
               

               
Conread position:
               
230-406
               

               
Cow position:
               
chrX:4629770-4629952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
230-407
               

               
Cow position:
               
chrX:12865929-12865750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
146, 97
               

               
Conread position:
               
230-407
               

               
Cow position:
               
chrX:46680008-46680187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
230-408
               

               
Cow position:
               
chrX:16531912-16531736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
146, 49
               

               
Conread position:
               
231-385
               

               
Cow position:
               
chrX:9838056-9837901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
231-386
               

               
Cow position:
               
chrX:14261908-14262064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
231-386
               

               
Cow position:
               
chrX:25205636-25205480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
231-387
               

               
Cow position:
               
chrX:9360800-9360644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
145, 76
               

               
Conread position:
               
231-388
               

               
Cow position:
               
chrX:9538476-9538318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
231-388
               

               
Cow position:
               
chrX:44908233-44908082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
145, 47
               

               
Conread position:
               
231-389
               

               
Cow position:
               
chrX:27176398-27176561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
231-389
               

               
Cow position:
               
chrX:30729486-30729645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
231-389
               

               
Cow position:
               
chrX:37364655-37364506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 47
               

               
Conread position:
               
231-398
               

               
Cow position:
               
chrX:5127831-5127670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
144, 41
               

               
Conread position:
               
231-398
               

               
Cow position:
               
chrX:26619447-26619613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
135, 50
               

               
Conread position:
               
231-398
               

               
Cow position:
               
chrX:30919474-30919642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
231-399
               

               
Cow position:
               
chrX:160119-160284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
145, 48
               

               
Conread position:
               
231-401
               

               
Cow position:
               
chrX:27486324-27486155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
145, 41
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chrX:17743978-17743801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chrX:25329930-25329749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chrX:39346868-39347048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
87, 124
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chrX:40142283-40142456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 87
               

               
Conread position:
               
231-408
               

               
Cow position:
               
chrX:37377348-37377531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
232-387
               

               
Cow position:
               
chrX:8492841-8492997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
232-388
               

               
Cow position:
               
chrX:47243361-47243519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
232-389
               

               
Cow position:
               
chrX:6607336-6607180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
144, 122
               

               
Conread position:
               
232-398
               

               
Cow position:
               
chrX:126704-126542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
144, 34
               

               
Conread position:
               
232-407
               

               
Cow position:
               
chrX:21255953-21255775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
144, 110
               

               
Conread position:
               
232-407
               

               
Cow position:
               
chrX:24735855-24735676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
232-407
               

               
Cow position:
               
chrX:47361969-47362148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
232-420
               

               
Cow position:
               
chrX:31373478-31373299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
144, 33
               

               
Conread position:
               
233-388
               

               
Cow position:
               
chrX:11448155-11448308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
143, 134
               

               
Conread position:
               
233-394
               

               
Cow position:
               
chrX:12852594-12852755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
143, 121
               

               
Conread position:
               
233-406
               

               
Cow position:
               
chrX:41192598-41192429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 63
               

               
Conread position:
               
234-364
               

               
Cow position:
               
chrX:23017917-23017786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
234-398
               

               
Cow position:
               
chrX:20787269-20787423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
234-407
               

               
Cow position:
               
chrX:33157284-33157110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
142, 28
               

               
Conread position:
               
236-406
               

               
Cow position:
               
chrX:45959147-45959321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
236-407
               

               
Cow position:
               
chrX:24173255-24173430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
236-413
               

               
Cow position:
               
chrX:10415618-10415794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
140, 24
               

               
Conread position:
               
236-413
               

               
Cow position:
               
chrX:23316508-23316688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
237-399
               

               
Cow position:
               
chrX:33823011-33822852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 48
               

               
Conread position:
               
237-406
               

               
Cow position:
               
chrX:39386354-39386526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
237-407
               

               
Cow position:
               
chrX:12314266-12314092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
238-410
               

               
Cow position:
               
chrX:32870876-32871051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
139, 89
               

               
Conread position:
               
238-410
               

               
Cow position:
               
chrX:47247005-47247174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
139, 25
               

               
Conread position:
               
239-389
               

               
Cow position:
               
chrX:9404027-9403876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
240-413
               

               
Cow position:
               
chrX:45420764-45420943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
243-389
               

               
Cow position:
               
chrX:33538849-33538709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
244-388
               

               
Cow position:
               
chrX:33519522-33519377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
246-413
               

               
Cow position:
               
chrX:5856424-5856591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
128, 120
               

               
Conread position:
               
258-398
               

               
Cow position:
               
chrX:9651155-9651295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
118, 125
               

               
Conread position:
               
258-407
               

               
Cow position:
               
chrX:22115391-22115544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
260-381
               

               
Cow position:
               
chrX:3130470-3130348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
262-398
               

               
Cow position:
               
chrX:12096364-12096497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
114, 10
               

               
Conread position:
               
264-407
               

               
Cow position:
               
chrX:24102864-24102717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
265-407
               

               
Cow position:
               
chrX:41846650-41846796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
268-408
               

               
Cow position:
               
chrX:5919353-5919208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
270-389
               

               
Cow position:
               
chrX:7710813-7710932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
104, 84
               

               
Conread position:
               
272-407
               

               
Cow position:
               
chrX:616528-616665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
274-388
               

               
Cow position:
               
chrX:48578290-48578175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
274-407
               

               
Cow position:
               
chrX:2351938-2351800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
279-413
               

               
Cow position:
               
chrX:29723318-29723183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 30
               

               
Conread position:
               
284-398
               

               
Cow position:
               
chrX:22325941-22325825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
286-413
               

               
Cow position:
               
chrX:45410179-45410311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
290-413
               

               
Cow position:
               
chrX:45956039-45955913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 97
               

               
Conread position:
               
293-407
               

               
Cow position:
               
chrX:12437384-12437498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
84, 61
               
Show alignments to all cow chromosomes.