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Cow genome map

           
Conread name:
           
Ss1.1-rnca23b_e14.5
        

               
Conread position:
               
64-505
               

               
Cow position:
               
chr11:48474887-48474449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
66-503
               

               
Cow position:
               
chr11:46580542-46580109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
67-507
               

               
Cow position:
               
chr11:22977688-22978118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
69-488
               

               
Cow position:
               
chr11:82940439-82940860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
71-496
               

               
Cow position:
               
chr11:64905172-64904745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
77-507
               

               
Cow position:
               
chr11:67804919-67804491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
86-504
               

               
Cow position:
               
chr11:34113426-34113015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
87-503
               

               
Cow position:
               
chr11:73353904-73354311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
257, 21
               

               
Conread position:
               
91-499
               

               
Cow position:
               
chr11:36112578-36112166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
91-505
               

               
Cow position:
               
chr11:18572952-18572544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
137, 11
               

               
Conread position:
               
101-505
               

               
Cow position:
               
chr11:6233728-6234138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
106-489
               

               
Cow position:
               
chr11:2084290-2083904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
108-428
               

               
Cow position:
               
chr11:9270591-9270909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
212, 13
               

               
Conread position:
               
108-457
               

               
Cow position:
               
chr11:65607550-65607905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
108-499
               

               
Cow position:
               
chr11:13043005-13043395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
108-500
               

               
Cow position:
               
chr11:66188176-66188576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
108-504
               

               
Cow position:
               
chr11:66041415-66041015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
108-505
               

               
Cow position:
               
chr11:18699013-18698615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 13
               

               
Conread position:
               
108-505
               

               
Cow position:
               
chr11:19247061-19247455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
108-505
               

               
Cow position:
               
chr11:41985905-41986303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
108-505
               

               
Cow position:
               
chr11:65826608-65826991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
108-505
               

               
Cow position:
               
chr11:67600921-67600508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
108-507
               

               
Cow position:
               
chr11:21843996-21844394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
108-527
               

               
Cow position:
               
chr11:77758618-77759043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
109-432
               

               
Cow position:
               
chr11:71500994-71501318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
112-505
               

               
Cow position:
               
chr11:59873062-59872667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
112-507
               

               
Cow position:
               
chr11:17227512-17227901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
113-499
               

               
Cow position:
               
chr11:56821111-56821510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
113-507
               

               
Cow position:
               
chr11:13500154-13499753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
120-468
               

               
Cow position:
               
chr11:23586764-23586413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
121-406
               

               
Cow position:
               
chr11:2575776-2576063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
122-291
               

               
Cow position:
               
chr11:897798-897632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
122-330
               

               
Cow position:
               
chr11:17721670-17721885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
122-334
               

               
Cow position:
               
chr11:33409132-33409345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
122-342
               

               
Cow position:
               
chr11:24599264-24599482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
168, 15
               

               
Conread position:
               
122-357
               

               
Cow position:
               
chr11:17036401-17036639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
122-382
               

               
Cow position:
               
chr11:62789258-62788993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
122-393
               

               
Cow position:
               
chr11:49057514-49057256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
171, 15
               

               
Conread position:
               
122-406
               

               
Cow position:
               
chr11:71390443-71390723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
177, 15
               

               
Conread position:
               
122-407
               

               
Cow position:
               
chr11:45435208-45434926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
122-409
               

               
Cow position:
               
chr11:56187738-56187457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
122-423
               

               
Cow position:
               
chr11:30830487-30830792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
122-423
               

               
Cow position:
               
chr11:51729405-51729111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
188, 13
               

               
Conread position:
               
122-457
               

               
Cow position:
               
chr11:4207447-4207101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 64
               

               
Conread position:
               
122-477
               

               
Cow position:
               
chr11:21728157-21728499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 17
               

               
Conread position:
               
122-480
               

               
Cow position:
               
chr11:11469522-11469868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
122-497
               

               
Cow position:
               
chr11:18706698-18707065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
122-497
               

               
Cow position:
               
chr11:45646462-45646845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
122-498
               

               
Cow position:
               
chr11:259045-259431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
122-498
               

               
Cow position:
               
chr11:48544567-48544190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
122-500
               

               
Cow position:
               
chr11:34121329-34120944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
122-500
               

               
Cow position:
               
chr11:40818501-40818893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
122-501
               

               
Cow position:
               
chr11:65495213-65495583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
122-503
               

               
Cow position:
               
chr11:36182823-36182431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
122-505
               

               
Cow position:
               
chr11:8988105-8988489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
122-505
               

               
Cow position:
               
chr11:17083184-17083557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
122-505
               

               
Cow position:
               
chr11:49149177-49148790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
122-505
               

               
Cow position:
               
chr11:62663110-62663492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
131, 15
               

               
Conread position:
               
122-505
               

               
Cow position:
               
chr11:68206715-68207095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
122-524
               

               
Cow position:
               
chr11:78380938-78381325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
122-525
               

               
Cow position:
               
chr11:27747049-27746640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
123-400
               

               
Cow position:
               
chr11:35213039-35213314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
123-467
               

               
Cow position:
               
chr11:2925177-2925512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
123-503
               

               
Cow position:
               
chr11:41305-40924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
123-503
               

               
Cow position:
               
chr11:44032137-44031742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
123-505
               

               
Cow position:
               
chr11:2917463-2917836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
123-505
               

               
Cow position:
               
chr11:11125790-11125403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
123-505
               

               
Cow position:
               
chr11:20602348-20601980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
159, 15
               

               
Conread position:
               
123-505
               

               
Cow position:
               
chr11:52297093-52297483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
123-527
               

               
Cow position:
               
chr11:3393084-3393493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
124-505
               

               
Cow position:
               
chr11:83043238-83043620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
124-508
               

               
Cow position:
               
chr11:33348065-33348447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
220, 13
               

               
Conread position:
               
125-438
               

               
Cow position:
               
chr11:37804432-37804746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
168, 12
               

               
Conread position:
               
125-478
               

               
Cow position:
               
chr11:32436458-32436096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
125-479
               

               
Cow position:
               
chr11:25620270-25620629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
125-498
               

               
Cow position:
               
chr11:35153701-35154080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
125-503
               

               
Cow position:
               
chr11:46746766-46746377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
125-504
               

               
Cow position:
               
chr11:79728545-79728932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 66
               

               
Conread position:
               
125-505
               

               
Cow position:
               
chr11:46747739-46748128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
12, 44
               

               
Conread position:
               
127-362
               

               
Cow position:
               
chr11:39060484-39060715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 30
               

               
Conread position:
               
129-491
               

               
Cow position:
               
chr11:62239861-62239504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
171, 28
               

               
Conread position:
               
129-502
               

               
Cow position:
               
chr11:33311095-33310714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr11:71868482-71868863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
131-456
               

               
Cow position:
               
chr11:36286815-36286488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
131-503
               

               
Cow position:
               
chr11:77128777-77128411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
132-505
               

               
Cow position:
               
chr11:41809379-41809736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
236, 25
               

               
Conread position:
               
133-479
               

               
Cow position:
               
chr11:65762475-65762830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr11:73512328-73512679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
133-507
               

               
Cow position:
               
chr11:952379-952007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 31
               

               
Conread position:
               
134-489
               

               
Cow position:
               
chr11:40258299-40258645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
134-540
               

               
Cow position:
               
chr11:63482319-63482719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
135-505
               

               
Cow position:
               
chr11:30355169-30354808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
173, 15
               

               
Conread position:
               
136-327
               

               
Cow position:
               
chr11:41293708-41293895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
165, 25
               

               
Conread position:
               
136-411
               

               
Cow position:
               
chr11:16906939-16907207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 58
               

               
Conread position:
               
136-432
               

               
Cow position:
               
chr11:34646699-34646402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
163, 21
               

               
Conread position:
               
136-447
               

               
Cow position:
               
chr11:72375564-72375890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
136-488
               

               
Cow position:
               
chr11:65157295-65157650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 59
               

               
Conread position:
               
136-489
               

               
Cow position:
               
chr11:36849027-36848688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
136-497
               

               
Cow position:
               
chr11:20238786-20238421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 7
               

               
Conread position:
               
136-497
               

               
Cow position:
               
chr11:77319524-77319172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
166, 21
               

               
Conread position:
               
136-498
               

               
Cow position:
               
chr11:37278110-37278452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
136-498
               

               
Cow position:
               
chr11:63847954-63847597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
136-499
               

               
Cow position:
               
chr11:50152701-50153072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
136-501
               

               
Cow position:
               
chr11:2907419-2907781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
187, 20
               

               
Conread position:
               
136-501
               

               
Cow position:
               
chr11:7590300-7589935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
182, 58
               

               
Conread position:
               
136-502
               

               
Cow position:
               
chr11:68904968-68905319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
208, 21
               

               
Conread position:
               
136-503
               

               
Cow position:
               
chr11:18086238-18086596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
211, 43
               

               
Conread position:
               
136-503
               

               
Cow position:
               
chr11:33753800-33754157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 57
               

               
Conread position:
               
136-503
               

               
Cow position:
               
chr11:70609910-70609530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
136-503
               

               
Cow position:
               
chr11:75178004-75177631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
136-503
               

               
Cow position:
               
chr11:77750662-77751023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
169, 20
               

               
Conread position:
               
136-505
               

               
Cow position:
               
chr11:28644197-28643822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 21
               

               
Conread position:
               
136-505
               

               
Cow position:
               
chr11:33414350-33413974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
136-505
               

               
Cow position:
               
chr11:34963179-34962803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
150, 19
               

               
Conread position:
               
136-505
               

               
Cow position:
               
chr11:39499467-39499117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
136-505
               

               
Cow position:
               
chr11:48272312-48271935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 58
               

               
Conread position:
               
136-505
               

               
Cow position:
               
chr11:54334438-54334075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
206, 43
               

               
Conread position:
               
136-505
               

               
Cow position:
               
chr11:60470089-60470439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
246, 21
               

               
Conread position:
               
136-505
               

               
Cow position:
               
chr11:69119404-69119040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 20
               

               
Conread position:
               
136-505
               

               
Cow position:
               
chr11:73924451-73924818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
136-530
               

               
Cow position:
               
chr11:52380762-52381154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 21
               

               
Conread position:
               
137-385
               

               
Cow position:
               
chr11:47772279-47772530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
137-480
               

               
Cow position:
               
chr11:62620485-62620150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
241, 20
               

               
Conread position:
               
137-484
               

               
Cow position:
               
chr11:27404962-27405307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 59
               

               
Conread position:
               
137-485
               

               
Cow position:
               
chr11:36658713-36659052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
174, 30
               

               
Conread position:
               
137-503
               

               
Cow position:
               
chr11:17831110-17831485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
137-503
               

               
Cow position:
               
chr11:37975046-37974668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
137-505
               

               
Cow position:
               
chr11:19487372-19487735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
166, 31
               

               
Conread position:
               
137-505
               

               
Cow position:
               
chr11:53778727-53778353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 58
               

               
Conread position:
               
137-505
               

               
Cow position:
               
chr11:80923214-80923595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
138-447
               

               
Cow position:
               
chr11:19591887-19592199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
138-459
               

               
Cow position:
               
chr11:11558281-11557955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
138-490
               

               
Cow position:
               
chr11:8525008-8525358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 19
               

               
Conread position:
               
138-492
               

               
Cow position:
               
chr11:17889621-17889973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
138-501
               

               
Cow position:
               
chr11:84385531-84385901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
138-502
               

               
Cow position:
               
chr11:27248598-27248236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 19
               

               
Conread position:
               
138-504
               

               
Cow position:
               
chr11:35580371-35579995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 63
               

               
Conread position:
               
138-505
               

               
Cow position:
               
chr11:1625112-1625474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
138-539
               

               
Cow position:
               
chr11:30192287-30191873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 18
               

               
Conread position:
               
140-371
               

               
Cow position:
               
chr11:65767306-65767073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
159, 20
               

               
Conread position:
               
141-498
               

               
Cow position:
               
chr11:56654664-56654294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
142-337
               

               
Cow position:
               
chr11:36328930-36329118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
142-342
               

               
Cow position:
               
chr11:8437587-8437782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 53
               

               
Conread position:
               
143-426
               

               
Cow position:
               
chr11:5568-5287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
165, 51
               

               
Conread position:
               
143-453
               

               
Cow position:
               
chr11:71492757-71493068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
201, 57
               

               
Conread position:
               
143-467
               

               
Cow position:
               
chr11:34144822-34145138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
167, 14
               

               
Conread position:
               
143-472
               

               
Cow position:
               
chr11:29960398-29960078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
165, 12
               

               
Conread position:
               
143-489
               

               
Cow position:
               
chr11:83230298-83230630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
225, 13
               

               
Conread position:
               
143-501
               

               
Cow position:
               
chr11:1070988-1071347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 14
               

               
Conread position:
               
143-502
               

               
Cow position:
               
chr11:83066590-83066239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
143-503
               

               
Cow position:
               
chr11:70836274-70836625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
127, 12
               

               
Conread position:
               
143-505
               

               
Cow position:
               
chr11:44636652-44637020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
143-505
               

               
Cow position:
               
chr11:45631663-45632024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
163, 14
               

               
Conread position:
               
143-505
               

               
Cow position:
               
chr11:53147427-53147799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
143-529
               

               
Cow position:
               
chr11:16342124-16342525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 57
               

               
Conread position:
               
144-489
               

               
Cow position:
               
chr11:30638846-30639192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
200, 45
               

               
Conread position:
               
144-489
               

               
Cow position:
               
chr11:44222986-44222656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
157, 14
               

               
Conread position:
               
144-501
               

               
Cow position:
               
chr11:377539-377904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 12
               

               
Conread position:
               
144-504
               

               
Cow position:
               
chr11:3234179-3233821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
203, 50
               

               
Conread position:
               
144-504
               

               
Cow position:
               
chr11:10992368-10992021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
144-504
               

               
Cow position:
               
chr11:20761944-20761587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 13
               

               
Conread position:
               
144-504
               

               
Cow position:
               
chr11:62150792-62151140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
144-505
               

               
Cow position:
               
chr11:15285513-15285877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
166, 13
               

               
Conread position:
               
144-505
               

               
Cow position:
               
chr11:43898240-43897878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 13
               

               
Conread position:
               
144-505
               

               
Cow position:
               
chr11:47545238-47544868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 59
               

               
Conread position:
               
144-505
               

               
Cow position:
               
chr11:56518209-56518572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
151, 12
               

               
Conread position:
               
144-527
               

               
Cow position:
               
chr11:17321754-17321376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
145-505
               

               
Cow position:
               
chr11:36799207-36799555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
199, 23
               

               
Conread position:
               
146-470
               

               
Cow position:
               
chr11:69811005-69810679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
146-499
               

               
Cow position:
               
chr11:35684401-35684751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 22
               

               
Conread position:
               
146-504
               

               
Cow position:
               
chr11:39115597-39115235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 50
               

               
Conread position:
               
146-505
               

               
Cow position:
               
chr11:44036821-44036456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
154, 48
               

               
Conread position:
               
146-505
               

               
Cow position:
               
chr11:55744567-55744214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
222, 42
               

               
Conread position:
               
146-505
               

               
Cow position:
               
chr11:83398005-83397645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
198, 25
               

               
Conread position:
               
146-527
               

               
Cow position:
               
chr11:30934516-30934144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 10
               

               
Conread position:
               
146-527
               

               
Cow position:
               
chr11:40459208-40458837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
218, 22
               

               
Conread position:
               
147-503
               

               
Cow position:
               
chr11:29946814-29947184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
147-505
               

               
Cow position:
               
chr11:22499266-22499610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
171, 53
               

               
Conread position:
               
147-505
               

               
Cow position:
               
chr11:23137953-23138320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
147-505
               

               
Cow position:
               
chr11:30165610-30165251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
148-502
               

               
Cow position:
               
chr11:25791595-25791949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
149-437
               

               
Cow position:
               
chr11:13592834-13592542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
150-381
               

               
Cow position:
               
chr11:69978068-69977843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
218, 37
               

               
Conread position:
               
150-468
               

               
Cow position:
               
chr11:17661181-17660872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
197, 44
               

               
Conread position:
               
150-505
               

               
Cow position:
               
chr11:12111361-12111727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
170, 50
               

               
Conread position:
               
150-505
               

               
Cow position:
               
chr11:50951651-50951291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
24, 8
               

               
Conread position:
               
150-505
               

               
Cow position:
               
chr11:61454419-61454794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
140, 50
               

               
Conread position:
               
150-508
               

               
Cow position:
               
chr11:8147801-8148146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
174, 44
               

               
Conread position:
               
151-469
               

               
Cow position:
               
chr11:19500695-19501001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
213, 43
               

               
Conread position:
               
151-485
               

               
Cow position:
               
chr11:10213472-10213807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 38
               

               
Conread position:
               
151-504
               

               
Cow position:
               
chr11:41272234-41271879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
147, 49
               

               
Conread position:
               
151-505
               

               
Cow position:
               
chr11:80530454-80530111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 6
               

               
Conread position:
               
152-478
               

               
Cow position:
               
chr11:42043902-42044223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
143, 5
               

               
Conread position:
               
152-500
               

               
Cow position:
               
chr11:49153044-49152699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
167, 48
               

               
Conread position:
               
152-503
               

               
Cow position:
               
chr11:80564388-80564047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
147, 21
               

               
Conread position:
               
152-505
               

               
Cow position:
               
chr11:1362372-1362740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
135, 42
               

               
Conread position:
               
152-505
               

               
Cow position:
               
chr11:77705846-77705505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
142, 42
               

               
Conread position:
               
153-447
               

               
Cow position:
               
chr11:61958650-61958951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
140, 27
               

               
Conread position:
               
153-488
               

               
Cow position:
               
chr11:76606767-76606443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 41
               

               
Conread position:
               
153-490
               

               
Cow position:
               
chr11:53553310-53553007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
215, 27
               

               
Conread position:
               
156-496
               

               
Cow position:
               
chr11:42083560-42083229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
157-404
               

               
Cow position:
               
chr11:55494770-55494522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
139, 37
               

               
Conread position:
               
157-496
               

               
Cow position:
               
chr11:35873912-35874235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
135, 37
               

               
Conread position:
               
160-489
               

               
Cow position:
               
chr11:47899356-47899033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 34
               

               
Conread position:
               
160-505
               

               
Cow position:
               
chr11:33341057-33341405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 34
               

               
Conread position:
               
160-505
               

               
Cow position:
               
chr11:49934643-49935002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
139, 34
               

               
Conread position:
               
160-505
               

               
Cow position:
               
chr11:64638438-64638783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
160-505
               

               
Cow position:
               
chr11:80819917-80820258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
184, 34
               

               
Conread position:
               
161-491
               

               
Cow position:
               
chr11:50073024-50072716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
183, 40
               

               
Conread position:
               
161-499
               

               
Cow position:
               
chr11:42519819-42519488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
161-505
               

               
Cow position:
               
chr11:31352465-31352830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
162-533
               

               
Cow position:
               
chr11:1485776-1486154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
167-474
               

               
Cow position:
               
chr11:66424799-66425119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
132, 23
               

               
Conread position:
               
167-500
               

               
Cow position:
               
chr11:11232375-11232708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
144, 33
               

               
Conread position:
               
167-500
               

               
Cow position:
               
chr11:50778448-50778116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 33
               

               
Conread position:
               
167-503
               

               
Cow position:
               
chr11:23128459-23128797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 27
               

               
Conread position:
               
167-505
               

               
Cow position:
               
chr11:30837626-30837283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
168-503
               

               
Cow position:
               
chr11:8428591-8428237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
170-489
               

               
Cow position:
               
chr11:8840668-8840984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
133, 75
               

               
Conread position:
               
170-503
               

               
Cow position:
               
chr11:1849088-1849423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 173
               

               
Conread position:
               
170-505
               

               
Cow position:
               
chr11:62880554-62880883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
137, 24
               

               
Conread position:
               
173-503
               

               
Cow position:
               
chr11:44642207-44642543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
173-505
               

               
Cow position:
               
chr11:13061161-13061483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 28
               

               
Conread position:
               
176-505
               

               
Cow position:
               
chr11:23232438-23232773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 75
               

               
Conread position:
               
176-505
               

               
Cow position:
               
chr11:42291764-42292095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
177-505
               

               
Cow position:
               
chr11:58990573-58990251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
178-465
               

               
Cow position:
               
chr11:49231943-49231654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 13
               

               
Conread position:
               
178-504
               

               
Cow position:
               
chr11:10095413-10095084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
132, 21
               

               
Conread position:
               
179-445
               

               
Cow position:
               
chr11:41215801-41215544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
179-505
               

               
Cow position:
               
chr11:16226769-16226446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 8
               

               
Conread position:
               
179-505
               

               
Cow position:
               
chr11:38639180-38638863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
166, 15
               

               
Conread position:
               
179-505
               

               
Cow position:
               
chr11:45897981-45898315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
180-457
               

               
Cow position:
               
chr11:52983743-52983479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
164, 14
               

               
Conread position:
               
180-490
               

               
Cow position:
               
chr11:2092402-2092095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
119, 14
               

               
Conread position:
               
180-500
               

               
Cow position:
               
chr11:58588412-58588090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
167, 20
               

               
Conread position:
               
180-503
               

               
Cow position:
               
chr11:30879735-30879421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
188, 14
               

               
Conread position:
               
180-503
               

               
Cow position:
               
chr11:51144781-51144460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
110, 20
               

               
Conread position:
               
180-505
               

               
Cow position:
               
chr11:34829718-34830039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
130, 14
               

               
Conread position:
               
180-505
               

               
Cow position:
               
chr11:36987017-36986702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
204, 21
               

               
Conread position:
               
180-505
               

               
Cow position:
               
chr11:43430389-43430706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
112, 14
               

               
Conread position:
               
180-505
               

               
Cow position:
               
chr11:62155706-62155371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
7, 11
               

               
Conread position:
               
181-475
               

               
Cow position:
               
chr11:2509239-2509525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 152
               

               
Conread position:
               
181-505
               

               
Cow position:
               
chr11:5328853-5328536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
188-505
               

               
Cow position:
               
chr11:24602026-24601710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
156, 96
               

               
Conread position:
               
193-505
               

               
Cow position:
               
chr11:76114704-76114395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
8, 114
               

               
Conread position:
               
195-499
               

               
Cow position:
               
chr11:7924534-7924843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
195-505
               

               
Cow position:
               
chr11:19788178-19787886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
197-331
               

               
Cow position:
               
chr11:54218767-54218635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
197-464
               

               
Cow position:
               
chr11:61858850-61859118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
115, 102
               

               
Conread position:
               
197-473
               

               
Cow position:
               
chr11:5433323-5433040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 153
               

               
Conread position:
               
197-481
               

               
Cow position:
               
chr11:63434005-63434291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
147, 106
               

               
Conread position:
               
197-505
               

               
Cow position:
               
chr11:24937718-24937403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 191
               

               
Conread position:
               
197-505
               

               
Cow position:
               
chr11:27939536-27939227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
197-505
               

               
Cow position:
               
chr11:44575692-44575996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
171, 97
               

               
Conread position:
               
197-505
               

               
Cow position:
               
chr11:59902943-59902631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
121, 98
               

               
Conread position:
               
197-505
               

               
Cow position:
               
chr11:70620097-70619796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 145
               

               
Conread position:
               
197-505
               

               
Cow position:
               
chr11:83323616-83323317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
147, 91
               

               
Conread position:
               
198-505
               

               
Cow position:
               
chr11:5031724-5032036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
112, 42
               

               
Conread position:
               
198-505
               

               
Cow position:
               
chr11:32198994-32198681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
47, 106
               

               
Conread position:
               
199-503
               

               
Cow position:
               
chr11:30597044-30596739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 222
               

               
Conread position:
               
200-459
               

               
Cow position:
               
chr11:67550328-67550578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
141, 80
               

               
Conread position:
               
200-499
               

               
Cow position:
               
chr11:30911954-30912246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
169, 11
               

               
Conread position:
               
200-499
               

               
Cow position:
               
chr11:61427644-61427360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
168, 87
               

               
Conread position:
               
200-499
               

               
Cow position:
               
chr11:81162383-81162685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
91, 167
               

               
Conread position:
               
200-500
               

               
Cow position:
               
chr11:67747334-67747027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
144, 271
               

               
Conread position:
               
200-505
               

               
Cow position:
               
chr11:21894112-21894413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
144, 24
               

               
Conread position:
               
200-505
               

               
Cow position:
               
chr11:44234405-44234099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
200-505
               

               
Cow position:
               
chr11:55761918-55761620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
200-505
               

               
Cow position:
               
chr11:62490488-62490174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
200-505
               

               
Cow position:
               
chr11:65409104-65409417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
45, 67
               

               
Conread position:
               
200-505
               

               
Cow position:
               
chr11:70483802-70484121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
200-505
               

               
Cow position:
               
chr11:74316759-74316447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
144, 80
               

               
Conread position:
               
200-505
               

               
Cow position:
               
chr11:76369473-76369781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
201-424
               

               
Cow position:
               
chr11:41175900-41176127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
201-441
               

               
Cow position:
               
chr11:5075179-5075418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
163, 127
               

               
Conread position:
               
201-448
               

               
Cow position:
               
chr11:64077453-64077704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 73
               

               
Conread position:
               
201-457
               

               
Cow position:
               
chr11:5486062-5485796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
201-459
               

               
Cow position:
               
chr11:70114521-70114259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 93
               

               
Conread position:
               
201-462
               

               
Cow position:
               
chr11:9463884-9463612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
201-463
               

               
Cow position:
               
chr11:68913189-68912920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
111, 91
               

               
Conread position:
               
201-466
               

               
Cow position:
               
chr11:20730229-20730499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 94
               

               
Conread position:
               
201-466
               

               
Cow position:
               
chr11:35724017-35723756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 65
               

               
Conread position:
               
201-471
               

               
Cow position:
               
chr11:19593866-19593593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
201-474
               

               
Cow position:
               
chr11:38874353-38874630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
118, 268
               

               
Conread position:
               
201-476
               

               
Cow position:
               
chr11:51293359-51293640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 87
               

               
Conread position:
               
201-480
               

               
Cow position:
               
chr11:5961354-5961078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 97
               

               
Conread position:
               
201-481
               

               
Cow position:
               
chr11:10686838-10687123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
201-481
               

               
Cow position:
               
chr11:23385194-23385480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 36
               

               
Conread position:
               
201-488
               

               
Cow position:
               
chr11:57724776-57725071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
55, 67
               

               
Conread position:
               
201-489
               

               
Cow position:
               
chr11:77745203-77745494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
82, 206
               

               
Conread position:
               
201-498
               

               
Cow position:
               
chr11:3726337-3726033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
201-498
               

               
Cow position:
               
chr11:6400015-6400326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
44, 104
               

               
Conread position:
               
201-500
               

               
Cow position:
               
chr11:40792656-40792948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
201-501
               

               
Cow position:
               
chr11:17495693-17496001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
53, 67
               

               
Conread position:
               
201-503
               

               
Cow position:
               
chr11:3833314-3833605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
146, 33
               

               
Conread position:
               
201-503
               

               
Cow position:
               
chr11:32595506-32595209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
143, 81
               

               
Conread position:
               
201-503
               

               
Cow position:
               
chr11:34616308-34616011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 83
               

               
Conread position:
               
201-503
               

               
Cow position:
               
chr11:47351387-47351096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
201-503
               

               
Cow position:
               
chr11:70382642-70382953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chr11:287287-287592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
62, 77
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chr11:5197026-5197336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chr11:18371388-18371698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 96
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chr11:35347704-35348016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
60, 46
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chr11:36940547-36940859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 112
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chr11:56728998-56728688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
65, 76
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chr11:81300572-81300871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
143, 60
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:2788442-2788120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 93
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:3720302-3719992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 32
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:3780369-3780684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:4323407-4323107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
112, 92
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:4436368-4436073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:4674397-4674710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
143, 106
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:4732391-4732079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:10620279-10620585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 131
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:15467507-15467210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
182, 33
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:15504161-15503841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
49, 118
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:17860107-17860413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
143, 106
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:18243893-18244201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
112, 35
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:18588537-18588840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
215, 144
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:23251544-23251862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:26483760-26483460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
117, 47
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:30708555-30708244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
105, 221
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:30764539-30764220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
52, 69
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:31413507-31413191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:32378236-32377928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 28
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:32750159-32749848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 31
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:33349652-33349961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
143, 93
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:36981612-36981308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 69
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:40467075-40467383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:41811866-41812171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
52, 67
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:42016591-42016898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:42835902-42836222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
44, 152
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:44819142-44818837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
143, 81
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:45277103-45277415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
147, 30
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:61203214-61202903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
101, 107
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:63065701-63065394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
29, 23
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:66733878-66733576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
110, 141
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:67931444-67931754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:70273355-70273042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
109, 93
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:80761329-80761639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:83357443-83357133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
122, 36
               

               
Conread position:
               
201-505
               

               
Cow position:
               
chr11:85723746-85723442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
60, 68
               

               
Conread position:
               
201-506
               

               
Cow position:
               
chr11:866339-866038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
162, 65
               

               
Conread position:
               
201-508
               

               
Cow position:
               
chr11:31525927-31525602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 277
               

               
Conread position:
               
201-518
               

               
Cow position:
               
chr11:29916590-29916265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
82, 220
               

               
Conread position:
               
201-529
               

               
Cow position:
               
chr11:59463590-59463919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
109, 55
               

               
Conread position:
               
201-529
               

               
Cow position:
               
chr11:80787858-80788194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
115, 93
               

               
Conread position:
               
201-531
               

               
Cow position:
               
chr11:18340992-18341320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
123, 53
               

               
Conread position:
               
201-557
               

               
Cow position:
               
chr11:34032154-34032508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
144, 24
               

               
Conread position:
               
201-622
               

               
Cow position:
               
chr11:70304118-70303708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
143, 67
               

               
Conread position:
               
202-489
               

               
Cow position:
               
chr11:5226683-5226985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 100
               

               
Conread position:
               
203-472
               

               
Cow position:
               
chr11:64044280-64044012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
141, 73
               

               
Conread position:
               
203-489
               

               
Cow position:
               
chr11:42884740-42885014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
203-497
               

               
Cow position:
               
chr11:33293732-33294043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
99, 91
               

               
Conread position:
               
203-500
               

               
Cow position:
               
chr11:87155566-87155261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
42, 64
               

               
Conread position:
               
203-503
               

               
Cow position:
               
chr11:30120615-30120919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
203-503
               

               
Cow position:
               
chr11:38236298-38235986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
203-503
               

               
Cow position:
               
chr11:45872264-45872576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
91, 84
               

               
Conread position:
               
203-504
               

               
Cow position:
               
chr11:21549527-21549237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
165, 85
               

               
Conread position:
               
203-504
               

               
Cow position:
               
chr11:53773728-53773414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
203-505
               

               
Cow position:
               
chr11:439616-439918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 82
               

               
Conread position:
               
203-505
               

               
Cow position:
               
chr11:6835580-6835268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
46, 66
               

               
Conread position:
               
203-505
               

               
Cow position:
               
chr11:8827826-8827520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
203-505
               

               
Cow position:
               
chr11:8828585-8828888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
203-505
               

               
Cow position:
               
chr11:13191281-13190960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
58, 119
               

               
Conread position:
               
203-505
               

               
Cow position:
               
chr11:26067136-26067439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 106
               

               
Conread position:
               
203-505
               

               
Cow position:
               
chr11:30721145-30720838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
80, 109
               

               
Conread position:
               
203-505
               

               
Cow position:
               
chr11:54856663-54856375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
183, 57
               

               
Conread position:
               
203-505
               

               
Cow position:
               
chr11:64090050-64090346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
204-505
               

               
Cow position:
               
chr11:63519045-63518755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
204-505
               

               
Cow position:
               
chr11:84724700-84724392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
205-521
               

               
Cow position:
               
chr11:55333954-55333632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
115, 88
               

               
Conread position:
               
206-505
               

               
Cow position:
               
chr11:16910315-16910626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
207-500
               

               
Cow position:
               
chr11:77766552-77766854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
93, 146
               

               
Conread position:
               
207-503
               

               
Cow position:
               
chr11:15632511-15632813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
99, 294
               

               
Conread position:
               
209-500
               

               
Cow position:
               
chr11:42792932-42793230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
210-467
               

               
Cow position:
               
chr11:2811690-2811945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
99, 142
               

               
Conread position:
               
210-539
               

               
Cow position:
               
chr11:14649274-14649604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
94, 73
               

               
Conread position:
               
211-432
               

               
Cow position:
               
chr11:57170791-57171016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 82
               

               
Conread position:
               
211-503
               

               
Cow position:
               
chr11:14094381-14094680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 179
               

               
Conread position:
               
213-504
               

               
Cow position:
               
chr11:8339369-8339663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
83, 140
               

               
Conread position:
               
213-527
               

               
Cow position:
               
chr11:65431091-65430781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
100, 55
               

               
Conread position:
               
214-474
               

               
Cow position:
               
chr11:18591398-18591662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
130, 81
               

               
Conread position:
               
217-505
               

               
Cow position:
               
chr11:18210315-18210608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
218-499
               

               
Cow position:
               
chr11:6154440-6154158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
226-505
               

               
Cow position:
               
chr11:60301937-60302217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
227-505
               

               
Cow position:
               
chr11:50197410-50197704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
229-501
               

               
Cow position:
               
chr11:16251223-16251504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr11:4412010-4412272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 76
               

               
Conread position:
               
241-505
               

               
Cow position:
               
chr11:25320064-25319791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
247-503
               

               
Cow position:
               
chr11:77208045-77207791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 71
               

               
Conread position:
               
249-489
               

               
Cow position:
               
chr11:47165140-47165381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
95, 61
               

               
Conread position:
               
249-501
               

               
Cow position:
               
chr11:62965547-62965809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
249-502
               

               
Cow position:
               
chr11:48901082-48901334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
249-505
               

               
Cow position:
               
chr11:41983456-41983706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
249-505
               

               
Cow position:
               
chr11:47586349-47586605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
249-506
               

               
Cow position:
               
chr11:8105786-8105522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
249-507
               

               
Cow position:
               
chr11:63516828-63516561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
250-466
               

               
Cow position:
               
chr11:21830348-21830573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
250-505
               

               
Cow position:
               
chr11:7333720-7333981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
63, 44
               

               
Conread position:
               
250-505
               

               
Cow position:
               
chr11:32432141-32431877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 49
               

               
Conread position:
               
251-505
               

               
Cow position:
               
chr11:1485360-1485620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
252-505
               

               
Cow position:
               
chr11:17112634-17112886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
252-505
               

               
Cow position:
               
chr11:38810350-38810610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
90, 57
               

               
Conread position:
               
252-505
               

               
Cow position:
               
chr11:41239273-41239531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
252-505
               

               
Cow position:
               
chr11:64088029-64087774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
62, 77
               

               
Conread position:
               
253-505
               

               
Cow position:
               
chr11:30110959-30110712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
91, 130
               

               
Conread position:
               
254-453
               

               
Cow position:
               
chr11:36672048-36672258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 39
               

               
Conread position:
               
254-499
               

               
Cow position:
               
chr11:2050575-2050326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
254-499
               

               
Cow position:
               
chr11:64029267-64029510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
132, 53
               

               
Conread position:
               
254-499
               

               
Cow position:
               
chr11:67950976-67951215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
158, 42
               

               
Conread position:
               
254-501
               

               
Cow position:
               
chr11:62979486-62979222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
254-503
               

               
Cow position:
               
chr11:71455788-71455530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
254-505
               

               
Cow position:
               
chr11:12401712-12401971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 53
               

               
Conread position:
               
254-505
               

               
Cow position:
               
chr11:48697444-48697188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 89
               

               
Conread position:
               
254-505
               

               
Cow position:
               
chr11:51043932-51044196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
254-505
               

               
Cow position:
               
chr11:83196493-83196240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
57, 7
               

               
Conread position:
               
255-505
               

               
Cow position:
               
chr11:59155882-59156130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
45, 166
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr11:11752523-11752778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr11:17968588-17968835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 38
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr11:24334708-24334452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr11:43369402-43369658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr11:46142042-46142299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
55, 39
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr11:60628945-60629200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr11:66529587-66529843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr11:72050937-72050681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr11:84184727-84184471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
256-506
               

               
Cow position:
               
chr11:52180261-52180004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
257-504
               

               
Cow position:
               
chr11:64334844-64334599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
259-505
               

               
Cow position:
               
chr11:3704295-3704061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
261-492
               

               
Cow position:
               
chr11:5677712-5677474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
261-504
               

               
Cow position:
               
chr11:38194146-38193893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
261-505
               

               
Cow position:
               
chr11:53130802-53130553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 241
               

               
Conread position:
               
261-505
               

               
Cow position:
               
chr11:81614651-81614891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
261-526
               

               
Cow position:
               
chr11:73478597-73478339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
261-527
               

               
Cow position:
               
chr11:2309861-2309592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
46, 122
               

               
Conread position:
               
262-503
               

               
Cow position:
               
chr11:18484181-18484417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 74
               

               
Conread position:
               
263-489
               

               
Cow position:
               
chr11:21819454-21819688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
264-505
               

               
Cow position:
               
chr11:10076754-10076515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 67
               

               
Conread position:
               
266-505
               

               
Cow position:
               
chr11:71846362-71846608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
82, 204
               

               
Conread position:
               
267-490
               

               
Cow position:
               
chr11:77241353-77241129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
77, 133
               

               
Conread position:
               
267-503
               

               
Cow position:
               
chr11:32609981-32609734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 37
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chr11:68570686-68570930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
267-505
               

               
Cow position:
               
chr11:9837115-9837357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 156
               

               
Conread position:
               
267-505
               

               
Cow position:
               
chr11:48932604-48932842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
267-505
               

               
Cow position:
               
chr11:49106040-49105799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 151
               

               
Conread position:
               
267-505
               

               
Cow position:
               
chr11:75748417-75748176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
52, 239
               

               
Conread position:
               
267-507
               

               
Cow position:
               
chr11:9221743-9221987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
268-446
               

               
Cow position:
               
chr11:47851008-47850826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
268-459
               

               
Cow position:
               
chr11:36301096-36301295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
268-469
               

               
Cow position:
               
chr11:81406180-81406381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
268-478
               

               
Cow position:
               
chr11:2514612-2514825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
42, 99
               

               
Conread position:
               
268-478
               

               
Cow position:
               
chr11:5526589-5526805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
268-480
               

               
Cow position:
               
chr11:7445023-7444805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 26
               

               
Conread position:
               
268-492
               

               
Cow position:
               
chr11:62808670-62808895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
268-498
               

               
Cow position:
               
chr11:3175364-3175125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
268-503
               

               
Cow position:
               
chr11:65857842-65857600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 41
               

               
Conread position:
               
268-503
               

               
Cow position:
               
chr11:79994839-79995077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 59
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chr11:171720-171956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 26
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chr11:986912-986680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chr11:59370996-59370755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chr11:62749774-62750009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
100, 37
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chr11:67345672-67345904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chr11:68909864-68910107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
268-529
               

               
Cow position:
               
chr11:43914197-43913937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
29, 151
               

               
Conread position:
               
271-505
               

               
Cow position:
               
chr11:31901025-31900789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
272-449
               

               
Cow position:
               
chr11:33364321-33364138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
272-466
               

               
Cow position:
               
chr11:30433476-30433275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-488
               

               
Cow position:
               
chr11:37100379-37100602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
272-503
               

               
Cow position:
               
chr11:15048387-15048149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:17078895-17078655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:23774184-23773944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:32031072-32030833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:39078130-39078370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:41040715-41040955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:41262098-41261858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:41269452-41269692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:41421852-41422092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:47655722-47655482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:47846919-47846680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:56051735-56051495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:57760780-57760541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:60778512-60778272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:63185569-63185809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:64951357-64951595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:68137123-68136883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:72015973-72016213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:74389984-74389744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr11:81174864-81174631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
272-533
               

               
Cow position:
               
chr11:10700713-10700979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
273-503
               

               
Cow position:
               
chr11:58102798-58103032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 74
               

               
Conread position:
               
273-505
               

               
Cow position:
               
chr11:62045373-62045139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 142
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr11:62709899-62710129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
276-505
               

               
Cow position:
               
chr11:37068343-37068562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
277-466
               

               
Cow position:
               
chr11:6364209-6364405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
277-466
               

               
Cow position:
               
chr11:25760669-25760472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
277-502
               

               
Cow position:
               
chr11:26117747-26117974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
67, 154
               

               
Conread position:
               
277-504
               

               
Cow position:
               
chr11:4384592-4384367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
277-505
               

               
Cow position:
               
chr11:6156582-6156806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
277-505
               

               
Cow position:
               
chr11:9235239-9235476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
277-505
               

               
Cow position:
               
chr11:10948497-10948732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
277-505
               

               
Cow position:
               
chr11:13247143-13247378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
277-505
               

               
Cow position:
               
chr11:18097593-18097828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
277-505
               

               
Cow position:
               
chr11:58156062-58155828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
277-505
               

               
Cow position:
               
chr11:61059635-61059870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
277-505
               

               
Cow position:
               
chr11:62019620-62019858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
277-505
               

               
Cow position:
               
chr11:66663499-66663734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
277-505
               

               
Cow position:
               
chr11:81066614-81066841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
278-505
               

               
Cow position:
               
chr11:35206547-35206781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
279-506
               

               
Cow position:
               
chr11:63520745-63520511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
284-505
               

               
Cow position:
               
chr11:2281325-2281546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
285-502
               

               
Cow position:
               
chr11:75480067-75480283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
286-504
               

               
Cow position:
               
chr11:51687761-51687984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
287-489
               

               
Cow position:
               
chr11:25165407-25165200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
288-500
               

               
Cow position:
               
chr11:63156946-63157167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
288-505
               

               
Cow position:
               
chr11:1668641-1668415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
289-505
               

               
Cow position:
               
chr11:74929743-74929521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
292-490
               

               
Cow position:
               
chr11:41438260-41438469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
293-505
               

               
Cow position:
               
chr11:30475959-30475740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
293-505
               

               
Cow position:
               
chr11:43593947-43593733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
293-527
               

               
Cow position:
               
chr11:37347437-37347192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
26, 183
               

               
Conread position:
               
294-502
               

               
Cow position:
               
chr11:75355566-75355353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
294-505
               

               
Cow position:
               
chr11:3303783-3303577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
294-505
               

               
Cow position:
               
chr11:41577058-41577264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 125
               

               
Conread position:
               
294-505
               

               
Cow position:
               
chr11:41598768-41598987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
295-504
               

               
Cow position:
               
chr11:27462436-27462643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
295-505
               

               
Cow position:
               
chr11:40485982-40486193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
49, 87
               

               
Conread position:
               
296-505
               

               
Cow position:
               
chr11:85764893-85764692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
298-505
               

               
Cow position:
               
chr11:57111353-57111567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 160
               

               
Conread position:
               
299-506
               

               
Cow position:
               
chr11:19508246-19508037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 141
               

               
Conread position:
               
300-478
               

               
Cow position:
               
chr11:31417381-31417203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
45, 152
               

               
Conread position:
               
300-505
               

               
Cow position:
               
chr11:25337026-25336816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
44, 198
               

               
Conread position:
               
300-505
               

               
Cow position:
               
chr11:43524569-43524363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
300-505
               

               
Cow position:
               
chr11:50112139-50111932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
300-614
               

               
Cow position:
               
chr11:7247932-7248247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
44, 33
               

               
Conread position:
               
301-505
               

               
Cow position:
               
chr11:7315178-7315386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 42
               

               
Conread position:
               
302-489
               

               
Cow position:
               
chr11:25783432-25783248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
302-505
               

               
Cow position:
               
chr11:80825111-80824909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 115
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chr11:53719891-53719691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
303-505
               

               
Cow position:
               
chr11:35238781-35238569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
304-489
               

               
Cow position:
               
chr11:84924148-84924342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
304-492
               

               
Cow position:
               
chr11:2832725-2832917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
305-505
               

               
Cow position:
               
chr11:25745266-25745062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 7
               

               
Conread position:
               
307-478
               

               
Cow position:
               
chr11:6329192-6329013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
308-504
               

               
Cow position:
               
chr11:34413040-34412838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr11:70617785-70617588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
314-505
               

               
Cow position:
               
chr11:35276236-35276041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 60
               

               
Conread position:
               
314-505
               

               
Cow position:
               
chr11:81138159-81137962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
314-539
               

               
Cow position:
               
chr11:84890814-84891048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
30, 189
               

               
Conread position:
               
320-505
               

               
Cow position:
               
chr11:6639437-6639252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
321-500
               

               
Cow position:
               
chr11:31885447-31885266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 89
               

               
Conread position:
               
321-505
               

               
Cow position:
               
chr11:35363427-35363236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 183
               

               
Conread position:
               
322-503
               

               
Cow position:
               
chr11:17192354-17192539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
323-505
               

               
Cow position:
               
chr11:10875953-10875763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
323-533
               

               
Cow position:
               
chr11:48232660-48232453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
325-504
               

               
Cow position:
               
chr11:49980665-49980850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
325-505
               

               
Cow position:
               
chr11:70459492-70459315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
330-503
               

               
Cow position:
               
chr11:85189462-85189641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
331-505
               

               
Cow position:
               
chr11:62376517-62376696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 171
               

               
Conread position:
               
333-509
               

               
Cow position:
               
chr11:36647280-36647097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
336-507
               

               
Cow position:
               
chr11:35881824-35881650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
345-505
               

               
Cow position:
               
chr11:58400164-58400006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 110
               

               
Conread position:
               
346-504
               

               
Cow position:
               
chr11:15608389-15608551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 155
               

               
Conread position:
               
346-505
               

               
Cow position:
               
chr11:55348168-55348003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
346-522
               

               
Cow position:
               
chr11:51756220-51756040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 153
               

               
Conread position:
               
347-490
               

               
Cow position:
               
chr11:26277190-26277335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
347-504
               

               
Cow position:
               
chr11:37563364-37563211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
347-505
               

               
Cow position:
               
chr11:37118390-37118225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 130
               

               
Conread position:
               
348-497
               

               
Cow position:
               
chr11:5416802-5416649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
16, 126
               

               
Conread position:
               
348-499
               

               
Cow position:
               
chr11:7414948-7415100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
348-501
               

               
Cow position:
               
chr11:16795252-16795407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
348-527
               

               
Cow position:
               
chr11:6620385-6620575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
348-532
               

               
Cow position:
               
chr11:39057534-39057350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
8, 32
               

               
Conread position:
               
349-504
               

               
Cow position:
               
chr11:75510334-75510491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
350-500
               

               
Cow position:
               
chr11:72870825-72870670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
356-510
               

               
Cow position:
               
chr11:12528714-12528864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 8
               

               
Conread position:
               
360-488
               

               
Cow position:
               
chr11:30172262-30172129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
360-500
               

               
Cow position:
               
chr11:34467484-34467348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
360-505
               

               
Cow position:
               
chr11:48428971-48428835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 55
               

               
Conread position:
               
362-505
               

               
Cow position:
               
chr11:36315487-36315341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
366-498
               

               
Cow position:
               
chr11:3241241-3241109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
48, 104
               

               
Conread position:
               
368-488
               

               
Cow position:
               
chr11:64405455-64405579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
369-499
               

               
Cow position:
               
chr11:17036671-17036806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
370-505
               

               
Cow position:
               
chr11:39034325-39034195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
373-505
               

               
Cow position:
               
chr11:23495743-23495610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
375-491
               

               
Cow position:
               
chr11:30466745-30466865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
375-504
               

               
Cow position:
               
chr11:31227861-31227736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
375-505
               

               
Cow position:
               
chr11:49873299-49873166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
375-505
               

               
Cow position:
               
chr11:78480672-78480535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
377-505
               

               
Cow position:
               
chr11:40608850-40608980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
379-505
               

               
Cow position:
               
chr11:9234495-9234368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
379-505
               

               
Cow position:
               
chr11:55117343-55117213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
379-505
               

               
Cow position:
               
chr11:70205911-70205788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
379-506
               

               
Cow position:
               
chr11:81337102-81337233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
380-505
               

               
Cow position:
               
chr11:10545859-10545730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
388-505
               

               
Cow position:
               
chr11:63166301-63166419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
389-501
               

               
Cow position:
               
chr11:69075165-69075052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
390-520
               

               
Cow position:
               
chr11:56751528-56751659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
392-519
               

               
Cow position:
               
chr11:81145004-81145131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
393-505
               

               
Cow position:
               
chr11:83925096-83924981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
397-505
               

               
Cow position:
               
chr11:59959131-59959238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
398-534
               

               
Cow position:
               
chr11:10839322-10839458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
16, 8
               

               
Conread position:
               
505-636
               

               
Cow position:
               
chr11:63167492-63167627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 42
               
Show alignments to all cow chromosomes.