Cow genome map

Conread name: Ss1.1-rnep11c_k21.5

Conread position: 1-421
Cow position: chr5:19789435-19789015 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 48-421
Cow position: chr5:19760213-19759840 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 60-421
Cow position: chr5:19686600-19686952 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 0

Conread position: 63-421
Cow position: chr5:19671927-19671569 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 66-421
Cow position: chr5:19768122-19768477 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 189-406
Cow position: chr5:19835553-19835336 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 203-406
Cow position: chr5:19853669-19853466 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 62, 52

Conread position: 217-407
Cow position: chr5:19805040-19805230 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 258-420
Cow position: chr5:20103677-20103517 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 153, 0

Conread position: 262-406
Cow position: chr5:19874366-19874222 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 265-407
Cow position: chr5:20062693-20062551 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 6, 12

Conread position: 265-426
Cow position: chr5:20080113-20079951 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 6, 12

Conread position: 271-419
Cow position: chr5:20123769-20123618 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 276-407
Cow position: chr5:20264343-20264212 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 276-410
Cow position: chr5:20233467-20233333 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 280-407
Cow position: chr5:19891482-19891355 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 280-407
Cow position: chr5:19903142-19903015 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 280-407
Cow position: chr5:20026466-20026339 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 280-410
Cow position: chr5:20323018-20322888 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 70, 64

Conread position: 280-411
Cow position: chr5:19974464-19974333 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 280-411
Cow position: chr5:19990346-19990215 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 283-411
Cow position: chr5:20009190-20009062 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 388-630
Cow position: chr5:20101350-20101103 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 165
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 68, 238

Conread position: 403-615
Cow position: chr5:19687701-19687913 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 403-615
Cow position: chr5:19758651-19758439 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 403-615
Cow position: chr5:19769196-19769408 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 403-615
Cow position: chr5:19787435-19787223 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 403-615
Cow position: chr5:19807704-19807916 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 403-615
Cow position: chr5:19833638-19833426 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 403-615
Cow position: chr5:19852264-19852052 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 149, 153

Conread position: 403-615
Cow position: chr5:19872573-19872361 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 403-615
Cow position: chr5:19889019-19888807 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 45

Conread position: 403-615
Cow position: chr5:20060092-20059874 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 403-615
Cow position: chr5:20079378-20079160 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 148
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 403-615
Cow position: chr5:20122385-20122167 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.