Cow genome map
| Conread name: | Ss1.1-rnep13c_g15.5 |
| Conread position: | 55-334 |
| Cow position: | chr26:26187420-26187142 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 25 |
| Conread position: | 58-520 |
| Cow position: | chr26:26163275-26162826 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 5 |
| Conread position: | 60-460 |
| Cow position: | chr26:26193606-26193176 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 60-504 |
| Cow position: | chr26:26176721-26176272 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 140 |
| Conread position: | 60-520 |
| Cow position: | chr26:26213947-26213466 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 164 |
| Conread position: | 62-460 |
| Cow position: | chr26:26236853-26236439 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 132 |
| Conread position: | 70-528 |
| Cow position: | chr26:26220363-26219913 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 6 |
| Conread position: | 73-300 |
| Cow position: | chr26:26219965-26219742 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 180, 10 |
| Conread position: | 73-359 |
| Cow position: | chr26:26204464-26204180 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 73-427 |
| Cow position: | chr26:26220124-26219768 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 73-459 |
| Cow position: | chr26:26236719-26236325 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 275 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 93, 220 |
| Conread position: | 80-461 |
| Cow position: | chr26:26204630-26204231 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 98, 318 |
| Conread position: | 84-436 |
| Cow position: | chr26:26247767-26247421 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 89 |
| Conread position: | 88-427 |
| Cow position: | chr26:26187358-26187001 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 327 |
| Conread position: | 88-427 |
| Cow position: | chr26:26213625-26213269 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 324 |
| Conread position: | 88-427 |
| Cow position: | chr26:26220081-26219747 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 141 |
| Conread position: | 88-460 |
| Cow position: | chr26:26236797-26236409 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 112 |
| Conread position: | 88-474 |
| Cow position: | chr26:26163153-26162764 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 112 |
| Conread position: | 95-427 |
| Cow position: | chr26:26204381-26204052 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 129 |
| Conread position: | 95-459 |
| Cow position: | chr26:26236727-26236381 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 100 |
| Conread position: | 95-516 |
| Cow position: | chr26:26220245-26219802 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 305 |
| Conread position: | 114-516 |
| Cow position: | chr26:26204491-26204086 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 122-516 |
| Cow position: | chr26:26163242-26162848 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 80 |
| Conread position: | 127-516 |
| Cow position: | chr26:26193383-26192997 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 128-516 |
| Cow position: | chr26:26213711-26213303 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 51 |
| Conread position: | 137-516 |
| Cow position: | chr26:26247525-26247119 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 155-427 |
| Cow position: | chr26:26247363-26247085 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 89 |
| Conread position: | 155-436 |
| Cow position: | chr26:26247537-26247247 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 89 |
| Conread position: | 170-501 |
| Cow position: | chr26:26187105-26186771 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 174-353 |
| Cow position: | chr26:26193063-26192884 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 174-353 |
| Cow position: | chr26:26204152-26203973 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 218-396 |
| Cow position: | chr26:26204615-26204437 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 148 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 220-516 |
| Cow position: | chr26:26176654-26176352 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 39, 163 |
| Conread position: | 220-516 |
| Cow position: | chr26:26187349-26187035 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 58, 115 |
| Conread position: | 220-520 |
| Cow position: | chr26:26236788-26236485 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 69, 144 |
| Conread position: | 241-457 |
| Cow position: | chr26:26187388-26187172 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 165, 156 |
| Conread position: | 245-427 |
| Cow position: | chr26:26193148-26192963 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 153 |
| Conread position: | 353-519 |
| Cow position: | chr26:26204603-26204437 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 371-516 |
| Cow position: | chr26:26187381-26187236 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-514 |
| Cow position: | chr26:26193509-26193365 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 398-520 |
| Cow position: | chr26:26247759-26247637 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-528 |
| Cow position: | chr26:26213762-26213614 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
Show alignments to all cow chromosomes.