Cow genome map
| Conread name: | Ss1.1-rnep16c_e13.5 |
| Conread position: | 1-370 |
| Cow position: | chr5:20062920-20062551 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-382 |
| Cow position: | chr5:20124000-20123618 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 0 |
| Conread position: | 41-370 |
| Cow position: | chr5:20323208-20322891 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 124-385 |
| Cow position: | chr5:20216929-20216673 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 70, 26 |
| Conread position: | 128-377 |
| Cow position: | chr5:20080213-20079964 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-373 |
| Cow position: | chr5:20264420-20264209 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 158-383 |
| Cow position: | chr5:20103740-20103517 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 176-370 |
| Cow position: | chr5:19974528-19974337 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 185-370 |
| Cow position: | chr5:20233517-20233336 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 186-373 |
| Cow position: | chr5:20285041-20284858 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 210-370 |
| Cow position: | chr5:19903175-19903015 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 210-370 |
| Cow position: | chr5:19990379-19990219 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 210-370 |
| Cow position: | chr5:20009226-20009066 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 210-370 |
| Cow position: | chr5:20026499-20026339 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 212-370 |
| Cow position: | chr5:20303565-20303407 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 213-377 |
| Cow position: | chr5:20336678-20336514 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-370 |
| Cow position: | chr5:20194959-20194810 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 86, 98 |
| Conread position: | 222-370 |
| Cow position: | chr5:19891503-19891355 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 223-370 |
| Cow position: | chr5:20136750-20136603 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-369 |
| Cow position: | chr5:19853606-19853466 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 232-384 |
| Cow position: | chr5:19768327-19768477 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 232-384 |
| Cow position: | chr5:19789165-19789015 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 233-380 |
| Cow position: | chr5:19805092-19805239 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 140 |
| Conread position: | 349-593 |
| Cow position: | chr5:20301795-20301551 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 351-591 |
| Cow position: | chr5:20101350-20101110 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-578 |
| Cow position: | chr5:20211232-20211020 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 84, 73 |
| Conread position: | 366-578 |
| Cow position: | chr5:20378021-20377815 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:19687701-19687913 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:19758651-19758439 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:19769196-19769408 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:19787435-19787223 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:19807704-19807916 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:19833638-19833426 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:19852264-19852052 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:19872573-19872361 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:19989365-19989147 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 366-584 |
| Cow position: | chr5:20008150-20007932 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:20025781-20025563 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 366-584 |
| Cow position: | chr5:20060092-20059874 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-584 |
| Cow position: | chr5:20079378-20079160 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-585 |
| Cow position: | chr5:20193743-20193524 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-587 |
| Cow position: | chr5:20231571-20231344 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 67, 195 |
| Conread position: | 366-587 |
| Cow position: | chr5:20336160-20335939 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 157, 147 |
| Conread position: | 366-590 |
| Cow position: | chr5:20321067-20320836 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 366-592 |
| Cow position: | chr5:20122385-20122159 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-593 |
| Cow position: | chr5:19889019-19888798 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 366-593 |
| Cow position: | chr5:20283832-20283599 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 69, 156 |
| Conread position: | 366-594 |
| Cow position: | chr5:19902486-19902258 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 366-594 |
| Cow position: | chr5:20135335-20135107 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.