Cow genome map
| Conread name: | Ss1.1-rnep19c_k15.5 |
| Conread position: | 1-487 |
| Cow position: | chr19:33898352-33898838 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-487 |
| Cow position: | chr19:33927402-33927840 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 38-479 |
| Cow position: | chr19:33829218-33829665 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 38-487 |
| Cow position: | chr19:33911064-33911510 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 46 |
| Conread position: | 271-483 |
| Cow position: | chr19:33974288-33974503 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 160, 172 |
| Conread position: | 271-487 |
| Cow position: | chr19:33814968-33815181 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 273-367 |
| Cow position: | chr19:33695750-33695844 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 273-403 |
| Cow position: | chr19:33754431-33754561 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 481-568 |
| Cow position: | chr19:33899325-33899412 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 562-724 |
| Cow position: | chr19:33900192-33900354 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 144 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 563-727 |
| Cow position: | chr19:33928768-33928932 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 564-724 |
| Cow position: | chr19:33831063-33831223 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 567-732 |
| Cow position: | chr19:33816413-33816580 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 570-724 |
| Cow position: | chr19:33772633-33772787 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 570-724 |
| Cow position: | chr19:33975618-33975772 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 722-885 |
| Cow position: | chr19:33816651-33816814 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 722-885 |
| Cow position: | chr19:33832418-33832581 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 722-885 |
| Cow position: | chr19:33900604-33900767 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 722-885 |
| Cow position: | chr19:33914003-33914166 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 722-885 |
| Cow position: | chr19:33931157-33931320 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 149 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 753-885 |
| Cow position: | chr19:33773671-33773803 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 884-1007 |
| Cow position: | chr19:33900849-33900972 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 117 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 884-1007 |
| Cow position: | chr19:33931404-33931527 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 884-1011 |
| Cow position: | chr19:33914248-33914375 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1011-1223 |
| Cow position: | chr19:33835696-33835908 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1011-1225 |
| Cow position: | chr19:33774132-33774346 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1011-1229 |
| Cow position: | chr19:33902662-33902880 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1011-1229 |
| Cow position: | chr19:33915033-33915252 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1011-1229 |
| Cow position: | chr19:33933282-33933500 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1011-1229 |
| Cow position: | chr19:33976994-33977213 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1278-1500 |
| Cow position: | chr19:33903662-33903892 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 147 |
Show alignments to all cow chromosomes.