Cow genome map
| Conread name: | Ss1.1-rnep20c_a20.5 |
| Conread position: | 1-310 |
| Cow position: | chr23:823394-823088 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 1-310 |
| Cow position: | chr23:837822-837516 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 1-310 |
| Cow position: | chr23:851744-851438 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 1-310 |
| Cow position: | chr23:856430-856124 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 1-310 |
| Cow position: | chr23:859491-859185 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 1-310 |
| Cow position: | chr23:882182-881876 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 1-310 |
| Cow position: | chr23:889121-888819 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 1-312 |
| Cow position: | chr23:813876-813563 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 209 |
| Conread position: | 1-312 |
| Cow position: | chr23:823634-823323 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 209 |
| Conread position: | 1-312 |
| Cow position: | chr23:838179-837868 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 209 |
| Conread position: | 1-312 |
| Cow position: | chr23:859731-859420 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 209 |
| Conread position: | 1-312 |
| Cow position: | chr23:865170-864862 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 180 |
| Conread position: | 1-312 |
| Cow position: | chr23:889360-889051 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 209 |
| Conread position: | 1-314 |
| Cow position: | chr23:876500-876187 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 209 |
| Conread position: | 1-314 |
| Cow position: | chr23:882392-882079 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 168 |
| Conread position: | 1-324 |
| Cow position: | chr23:852014-851691 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 233 |
| Conread position: | 7-324 |
| Cow position: | chr23:781681-781989 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 229, 49 |
| Conread position: | 8-312 |
| Cow position: | chr23:837977-837679 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 105, 95 |
| Conread position: | 8-336 |
| Cow position: | chr23:789055-788721 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 10-310 |
| Cow position: | chr23:876281-875984 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 10-324 |
| Cow position: | chr23:823517-823209 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 10-324 |
| Cow position: | chr23:859614-859306 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 10-336 |
| Cow position: | chr23:823415-823092 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 10-336 |
| Cow position: | chr23:837843-837520 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 10-336 |
| Cow position: | chr23:851765-851442 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 10-336 |
| Cow position: | chr23:856451-856128 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 10-336 |
| Cow position: | chr23:859512-859189 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 10-336 |
| Cow position: | chr23:876296-875988 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 103, 93 |
| Conread position: | 10-336 |
| Cow position: | chr23:882203-881880 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 10-336 |
| Cow position: | chr23:889141-888823 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 5 |
| Conread position: | 11-311 |
| Cow position: | chr23:766644-766935 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 12-314 |
| Cow position: | chr23:782034-782330 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 75, 32 |
| Conread position: | 14-316 |
| Cow position: | chr23:781934-782248 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 250 |
| Conread position: | 14-332 |
| Cow position: | chr23:775869-776188 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 190, 59 |
| Conread position: | 15-336 |
| Cow position: | chr23:813787-813465 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 18-312 |
| Cow position: | chr23:851904-851601 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 18-312 |
| Cow position: | chr23:876390-876102 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 23-312 |
| Cow position: | chr23:823672-823398 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 23-312 |
| Cow position: | chr23:859769-859495 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 23-312 |
| Cow position: | chr23:876538-876264 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 23-312 |
| Cow position: | chr23:889398-889125 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 23-324 |
| Cow position: | chr23:882430-882144 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 23-334 |
| Cow position: | chr23:851854-851549 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 35-286 |
| Cow position: | chr23:813928-813678 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 6 |
| Conread position: | 35-324 |
| Cow position: | chr23:837917-837637 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 36-312 |
| Cow position: | chr23:882309-882039 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 50-328 |
| Cow position: | chr23:856456-856180 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 83, 92 |
| Conread position: | 52-324 |
| Cow position: | chr23:852035-851763 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 96, 26 |
| Conread position: | 57-336 |
| Cow position: | chr23:865021-864748 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 65-267 |
| Cow position: | chr23:801047-800845 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-297 |
| Cow position: | chr23:781721-781947 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 193, 83 |
| Conread position: | 65-312 |
| Cow position: | chr23:823492-823251 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 65-312 |
| Cow position: | chr23:859589-859348 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 65-321 |
| Cow position: | chr23:782234-782491 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 101, 67 |
| Conread position: | 65-324 |
| Cow position: | chr23:876358-876105 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 65-324 |
| Cow position: | chr23:882250-881997 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 66-297 |
| Cow position: | chr23:801076-800845 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-301 |
| Cow position: | chr23:856454-856223 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 67-313 |
| Cow position: | chr23:838203-837957 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 67-324 |
| Cow position: | chr23:856496-856245 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 69-312 |
| Cow position: | chr23:823446-823206 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 76-336 |
| Cow position: | chr23:801081-800821 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 82-316 |
| Cow position: | chr23:781651-781879 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 82-325 |
| Cow position: | chr23:789071-788834 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 86-296 |
| Cow position: | chr23:823713-823501 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 142, 30 |
| Conread position: | 96-296 |
| Cow position: | chr23:838251-838046 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 126 |
| Conread position: | 97-324 |
| Cow position: | chr23:838113-837886 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 43, 137 |
| Conread position: | 114-316 |
| Cow position: | chr23:776074-776270 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 126-296 |
| Cow position: | chr23:852054-851881 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 102, 94 |
| Conread position: | 126-296 |
| Cow position: | chr23:859771-859598 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 102, 94 |
| Conread position: | 126-296 |
| Cow position: | chr23:876540-876367 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 102, 94 |
| Conread position: | 126-296 |
| Cow position: | chr23:882432-882259 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 102, 94 |
| Conread position: | 126-296 |
| Cow position: | chr23:889400-889227 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 102, 94 |
| Conread position: | 141-312 |
| Cow position: | chr23:801106-800935 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 142-312 |
| Cow position: | chr23:856454-856287 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 134, 0 |
Show alignments to all cow chromosomes.