Cow genome map
| Conread name: | Ss1.1-rnep26c_m7.5 |
| Conread position: | 23-124 |
| Cow position: | chr5:19756866-19756765 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-124 |
| Cow position: | chr5:19771037-19771138 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-124 |
| Cow position: | chr5:19786206-19786105 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-124 |
| Cow position: | chr5:19832652-19832551 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-305 |
| Cow position: | chr5:19756565-19756360 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 119-291 |
| Cow position: | chr5:19812252-19812423 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 119-291 |
| Cow position: | chr5:19831898-19831727 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 119-291 |
| Cow position: | chr5:19868718-19868547 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 119-294 |
| Cow position: | chr5:19850045-19849871 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 119-294 |
| Cow position: | chr5:20376009-20375835 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 119-305 |
| Cow position: | chr5:19678203-19678387 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 119-305 |
| Cow position: | chr5:19689264-19689448 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 119-305 |
| Cow position: | chr5:19771362-19771546 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 119-305 |
| Cow position: | chr5:19785530-19785346 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 133-304 |
| Cow position: | chr5:19882971-19882802 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 136-291 |
| Cow position: | chr5:19988369-19988215 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 108, 115 |
| Conread position: | 136-291 |
| Cow position: | chr5:20007159-20007005 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 108, 115 |
| Conread position: | 142-285 |
| Cow position: | chr5:20024123-20023980 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 173-291 |
| Cow position: | chr5:19899996-19899879 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 270-411 |
| Cow position: | chr5:19678622-19678763 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 125 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 270-411 |
| Cow position: | chr5:19689683-19689824 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 125 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-405 |
| Cow position: | chr5:19812651-19812772 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-410 |
| Cow position: | chr5:19785101-19784975 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 119 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-411 |
| Cow position: | chr5:19756118-19755991 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 121 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-411 |
| Cow position: | chr5:19771777-19771904 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 119 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-411 |
| Cow position: | chr5:19831471-19831344 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 119 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 406-627 |
| Cow position: | chr5:20330336-20330115 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 106 |
| Conread position: | 408-626 |
| Cow position: | chr5:20191548-20191330 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-627 |
| Cow position: | chr5:20281294-20281075 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-633 |
| Cow position: | chr5:19864148-19863923 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-636 |
| Cow position: | chr5:20227373-20227145 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-627 |
| Cow position: | chr5:19818626-19818844 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-627 |
| Cow position: | chr5:19849140-19848922 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-644 |
| Cow position: | chr5:20093857-20093622 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-662 |
| Cow position: | chr5:20116545-20116294 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 0 |
| Conread position: | 410-627 |
| Cow position: | chr5:20259105-20258888 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 410-633 |
| Cow position: | chr5:19679014-19679230 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 147 |
| Conread position: | 410-633 |
| Cow position: | chr5:19690075-19690298 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 410-633 |
| Cow position: | chr5:19755779-19755556 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 410-633 |
| Cow position: | chr5:19772099-19772321 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 410-633 |
| Cow position: | chr5:19784723-19784500 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 415-641 |
| Cow position: | chr5:20057304-20057078 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-627 |
| Cow position: | chr5:19881466-19881255 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-627 |
| Cow position: | chr5:19897673-19897462 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-627 |
| Cow position: | chr5:19986843-19986632 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-627 |
| Cow position: | chr5:20005641-20005430 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-627 |
| Cow position: | chr5:20023272-20023061 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-627 |
| Cow position: | chr5:20074391-20074180 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-633 |
| Cow position: | chr5:19830948-19830731 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 419-627 |
| Cow position: | chr5:20314749-20314541 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 421-627 |
| Cow position: | chr5:20298353-20298147 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 421-640 |
| Cow position: | chr5:20374679-20374461 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 427-627 |
| Cow position: | chr5:24472538-24472733 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 431-627 |
| Cow position: | chr5:20131444-20131248 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-627 |
| Cow position: | chr5:19746373-19746559 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 442-627 |
| Cow position: | chr5:19570219-19570034 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 665-802 |
| Cow position: | chr5:19755026-19754889 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 129 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 665-827 |
| Cow position: | chr5:19783295-19783133 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.