Cow genome map
| Conread name: | Ss1.1-rnep27c_m17.5 |
| Conread position: | 4-420 |
| Cow position: | chr23:693427-693849 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 376 |
| Conread position: | 211-679 |
| Cow position: | chr23:758190-757724 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 26 |
| Conread position: | 337-874 |
| Cow position: | chr23:781631-782171 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 119 |
| Conread position: | 345-832 |
| Cow position: | chr23:775787-776289 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 322 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 350-754 |
| Cow position: | chr23:823530-823114 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 350-797 |
| Cow position: | chr23:851910-851463 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 350-874 |
| Cow position: | chr23:859762-859214 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 352 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 86, 179 |
| Conread position: | 350-906 |
| Cow position: | chr23:852045-851481 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 368 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 86, 179 |
| Conread position: | 353-754 |
| Cow position: | chr23:882318-881902 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 353-795 |
| Cow position: | chr23:782037-782467 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 61, 129 |
| Conread position: | 353-797 |
| Cow position: | chr23:837970-837541 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 119 |
| Conread position: | 353-906 |
| Cow position: | chr23:823693-823131 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 363 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 354-795 |
| Cow position: | chr23:766502-766937 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 177 |
| Conread position: | 357-756 |
| Cow position: | chr23:882326-881915 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 359-642 |
| Cow position: | chr23:789012-788756 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 359-714 |
| Cow position: | chr23:823461-823112 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 359-714 |
| Cow position: | chr23:837889-837540 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 359-714 |
| Cow position: | chr23:851811-851462 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 359-714 |
| Cow position: | chr23:859558-859209 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 359-714 |
| Cow position: | chr23:882249-881900 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 359-714 |
| Cow position: | chr23:889187-888843 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 58 |
| Conread position: | 359-749 |
| Cow position: | chr23:851871-851454 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 359-874 |
| Cow position: | chr23:781797-782285 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 360-677 |
| Cow position: | chr23:782152-782478 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 128 |
| Conread position: | 360-714 |
| Cow position: | chr23:856496-856148 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 86, 116 |
| Conread position: | 361-754 |
| Cow position: | chr23:859616-859211 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 28, 80 |
| Conread position: | 361-874 |
| Cow position: | chr23:851992-851467 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 341 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 80 |
| Conread position: | 362-717 |
| Cow position: | chr23:782124-782485 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 33, 220 |
| Conread position: | 370-797 |
| Cow position: | chr23:889299-888844 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 296 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 25, 121 |
| Conread position: | 370-917 |
| Cow position: | chr23:838118-837549 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 358 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 373-797 |
| Cow position: | chr23:813917-813485 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 376-874 |
| Cow position: | chr23:838213-837722 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 322 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 383-906 |
| Cow position: | chr23:859758-859228 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 348 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 383-915 |
| Cow position: | chr23:889387-888853 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 347 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 383-923 |
| Cow position: | chr23:876527-875995 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 341 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 399-738 |
| Cow position: | chr23:789029-788687 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 39, 67 |
| Conread position: | 401-906 |
| Cow position: | chr23:882432-881919 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 323 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 402-802 |
| Cow position: | chr23:782044-782459 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 432-926 |
| Cow position: | chr23:775805-776328 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 109 |
| Conread position: | 443-874 |
| Cow position: | chr23:865210-864773 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 165, 86 |
| Conread position: | 490-797 |
| Cow position: | chr23:856453-856149 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 139 |
| Conread position: | 496-803 |
| Cow position: | chr23:789049-788736 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 548-862 |
| Cow position: | chr23:781713-782021 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 14 |
| Conread position: | 550-874 |
| Cow position: | chr23:856491-856153 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 101, 11 |
| Conread position: | 554-793 |
| Cow position: | chr23:757966-757724 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 40, 5 |
| Conread position: | 560-756 |
| Cow position: | chr23:801058-800856 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 151 |
| Conread position: | 567-757 |
| Cow position: | chr23:801081-800885 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 576-886 |
| Cow position: | chr23:789053-788746 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 599-914 |
| Cow position: | chr23:789060-788751 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 110 |
| Conread position: | 602-874 |
| Cow position: | chr23:782136-782408 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 603-906 |
| Cow position: | chr23:856481-856167 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 618-862 |
| Cow position: | chr23:758047-757809 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 77, 86 |
Show alignments to all cow chromosomes.