Cow genome map


           Conread name:
           Ss1.1-rnep31c_n21.5
        

               Conread position:
               1-75
               

               Cow position:
               
               

               Alignm length:
               75
               

               Alignm identity:
               71
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-78
               

               Cow position:
               
               

               Alignm length:
               78
               

               Alignm identity:
               72
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               37-230
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 34
               

               Conread position:
               69-230
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               69-230
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               141
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               69-230
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               146
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               69-230
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               148
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               69-245
               

               Cow position:
               
               

               Alignm length:
               178
               

               Alignm identity:
               152
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               70-230
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               70-230
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               70-230
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               70-230
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               70-230
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               146
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               70-230
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               138
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-230
               

               Cow position:
               
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-230
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               77-230
               

               Cow position:
               
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               78-230
               

               Cow position:
               
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               223-387
               

               Cow position:
               
               

               Alignm length:
               165
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               228-378
               

               Cow position:
               
               

               Alignm length:
               151
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               228-381
               

               Cow position:
               
               

               Alignm length:
               154
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               228-382
               

               Cow position:
               
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               228-391
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               228-391
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               143
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               228-391
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               142
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               228-391
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               145
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               228-391
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               144
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               388-529
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               28, 37
               

               Conread position:
               389-517
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               389-517
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               119
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               389-517
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               122
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               389-517
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               125
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               389-517
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               125
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               389-517
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               125
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               390-517
               

               Cow position:
               
               

               Alignm length:
               128
               

               Alignm identity:
               121
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               390-529
               

               Cow position:
               
               

               Alignm length:
               141
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               409-517
               

               Cow position:
               
               

               Alignm length:
               109
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               409-517
               

               Cow position:
               
               

               Alignm length:
               109
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               517-739
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               517-739
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               517-739
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               517-739
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               517-739
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               517-739
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               517-739
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               519-739
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               524-732
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               158
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               524-733
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               524-733
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               159
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               527-732
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               527-739
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               527-740
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               41, 37
               

               Conread position:
               527-759
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               214, 223
               

               Conread position:
               598-739
               

               Cow position:
               
               

               Alignm length:
               142
               

               Alignm identity:
               124
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               736-1074
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 152
               
Show alignments to all cow chromosomes.