Cow genome map
| Conread name: | Ss1.1-rnep31c_n21.5 |
| Conread position: | 1-75 |
| Cow position: | chr23:548347-548421 (view UCSC Genome Browser custom track) |
| Alignm length: | 75 |
| Alignm identity: | 71 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-78 |
| Cow position: | chr23:599704-599781 (view UCSC Genome Browser custom track) |
| Alignm length: | 78 |
| Alignm identity: | 72 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-230 |
| Cow position: | chr23:623378-623571 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 69-230 |
| Cow position: | chr23:329460-329621 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-230 |
| Cow position: | chr23:474033-474194 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 141 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-230 |
| Cow position: | chr23:548747-548908 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 146 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-230 |
| Cow position: | chr23:582485-582646 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 148 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-245 |
| Cow position: | chr23:601048-601225 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 70-230 |
| Cow position: | chr23:321057-321217 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-230 |
| Cow position: | chr23:340593-340753 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-230 |
| Cow position: | chr23:373207-373367 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-230 |
| Cow position: | chr23:442469-442629 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-230 |
| Cow position: | chr23:485984-486144 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 146 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-230 |
| Cow position: | chr23:493753-493913 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 138 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-230 |
| Cow position: | chr23:434283-434440 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-230 |
| Cow position: | chr23:456232-456390 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 77-230 |
| Cow position: | chr23:517993-518146 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-230 |
| Cow position: | chr23:535866-536018 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 223-387 |
| Cow position: | chr23:373510-373674 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-378 |
| Cow position: | chr23:495429-495579 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-381 |
| Cow position: | chr23:486409-486562 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-382 |
| Cow position: | chr23:518508-518662 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-391 |
| Cow position: | chr23:474739-474902 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-391 |
| Cow position: | chr23:549683-549846 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-391 |
| Cow position: | chr23:584136-584299 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 142 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-391 |
| Cow position: | chr23:602074-602237 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-391 |
| Cow position: | chr23:624714-624877 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 144 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-529 |
| Cow position: | chr23:435014-435157 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 389-517 |
| Cow position: | chr23:475000-475128 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-517 |
| Cow position: | chr23:486858-486986 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 119 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-517 |
| Cow position: | chr23:549938-550066 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 122 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-517 |
| Cow position: | chr23:584391-584519 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 125 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-517 |
| Cow position: | chr23:602329-602457 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 125 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-517 |
| Cow position: | chr23:624969-625097 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 125 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-517 |
| Cow position: | chr23:561987-562114 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 121 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-529 |
| Cow position: | chr23:443357-443497 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 409-517 |
| Cow position: | chr23:518777-518885 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-517 |
| Cow position: | chr23:536586-536694 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-739 |
| Cow position: | chr23:487403-487625 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-739 |
| Cow position: | chr23:497165-497387 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-739 |
| Cow position: | chr23:537380-537602 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-739 |
| Cow position: | chr23:562285-562507 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-739 |
| Cow position: | chr23:584690-584912 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-739 |
| Cow position: | chr23:602628-602850 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-739 |
| Cow position: | chr23:625268-625490 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 519-739 |
| Cow position: | chr23:475297-475517 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 524-732 |
| Cow position: | chr23:331435-331643 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 524-733 |
| Cow position: | chr23:323475-323684 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 524-733 |
| Cow position: | chr23:373992-374201 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 527-732 |
| Cow position: | chr23:435284-435489 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 527-739 |
| Cow position: | chr23:457058-457270 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 527-740 |
| Cow position: | chr23:443665-443878 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 41, 37 |
| Conread position: | 527-759 |
| Cow position: | chr23:341556-341790 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 214, 223 |
| Conread position: | 598-739 |
| Cow position: | chr23:519413-519554 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 124 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 736-1074 |
| Cow position: | chr23:603616-603941 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 152 |
Show alignments to all cow chromosomes.