Cow genome map

Conread name: Ss1.1-rnep32c_d10.5

Conread position: 1-387
Cow position: chr23:547749-548138 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 1-387
Cow position: chr23:620895-621285 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 33-387
Cow position: chr23:597597-597954 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 35-387
Cow position: chr23:581432-581787 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 92-387
Cow position: chr23:516380-516678 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 94-284
Cow position: chr23:532384-532577 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 35, 74

Conread position: 174-387
Cow position: chr23:484692-484905 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 174-393
Cow position: chr23:472598-472818 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 177-387
Cow position: chr23:492717-492927 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 186-377
Cow position: chr23:371184-371374 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 159, 13

Conread position: 187-387
Cow position: chr23:441306-441509 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 144, 133

Conread position: 198-377
Cow position: chr23:339747-339926 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 145, 129

Conread position: 199-377
Cow position: chr23:318343-318521 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 146, 128

Conread position: 199-377
Cow position: chr23:432113-432291 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 144, 128

Conread position: 199-387
Cow position: chr23:454533-454724 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 132, 153

Conread position: 204-387
Cow position: chr23:327544-327727 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 136, 123

Conread position: 386-472
Cow position: chr23:485707-485793 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 81
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 386-472
Cow position: chr23:622274-622360 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 81
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 386-473
Cow position: chr23:548334-548421 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 81
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 386-473
Cow position: chr23:581889-581976 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 79
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-476
Cow position: chr23:599691-599781 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 80
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 435-588
Cow position: chr23:623378-623531 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 127
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 25, 35

Conread position: 466-588
Cow position: chr23:485982-486104 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 109
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 467-587
Cow position: chr23:321056-321176 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 467-587
Cow position: chr23:373206-373326 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 467-588
Cow position: chr23:442468-442589 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 468-588
Cow position: chr23:474034-474154 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 111
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 468-588
Cow position: chr23:493753-493873 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 109
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 468-588
Cow position: chr23:548748-548868 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 114
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 468-588
Cow position: chr23:582486-582606 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 108
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 471-582
Cow position: chr23:456232-456344 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 471-588
Cow position: chr23:601053-601170 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 111
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.