Cow genome map

Conread name: Ss1.1-rnlu1823b_k24.5

Conread position: 1-132
Cow position: chrX:23185092-23185223 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-185
Cow position: chrX:597236-597412 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 1-203
Cow position: chrX:16763685-16763881 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 193, 84

Conread position: 1-219
Cow position: chrX:2314372-2314591 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 10, 0

Conread position: 1-251
Cow position: chrX:42480070-42479831 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 169
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 53, 17

Conread position: 3-234
Cow position: chrX:48558990-48558759 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 64

Conread position: 4-203
Cow position: chrX:37749749-37749939 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 43

Conread position: 5-158
Cow position: chrX:39886970-39887125 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 5-171
Cow position: chrX:22864019-22864187 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 5-265
Cow position: chrX:13122186-13121917 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 6-145
Cow position: chrX:41194145-41194007 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 60

Conread position: 6-177
Cow position: chrX:10415011-10415183 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 7-172
Cow position: chrX:18873022-18873187 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 7-179
Cow position: chrX:35392064-35392230 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 47

Conread position: 7-185
Cow position: chrX:31489760-31489582 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 7-264
Cow position: chrX:1466404-1466147 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 16, 100

Conread position: 8-129
Cow position: chrX:32590167-32590288 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 8-141
Cow position: chrX:38726906-38727032 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 8-159
Cow position: chrX:876609-876759 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 8-161
Cow position: chrX:1996213-1996366 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 8-166
Cow position: chrX:42515893-42516049 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 8-169
Cow position: chrX:30958967-30958808 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 16, 39

Conread position: 8-169
Cow position: chrX:37717960-37717800 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 152, 0

Conread position: 8-175
Cow position: chrX:34193842-34194009 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 8-179
Cow position: chrX:33466860-33466692 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 72, 38

Conread position: 8-179
Cow position: chrX:41435305-41435481 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 11

Conread position: 8-184
Cow position: chrX:1938251-1938077 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 97, 0

Conread position: 8-184
Cow position: chrX:10279115-10278933 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 8, 43

Conread position: 8-184
Cow position: chrX:32420448-32420275 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 8-184
Cow position: chrX:41011130-41010961 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 46

Conread position: 8-185
Cow position: chrX:11589130-11589305 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 8-185
Cow position: chrX:41199459-41199286 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 146, 11

Conread position: 8-203
Cow position: chrX:4092160-4091968 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 38, 0

Conread position: 8-203
Cow position: chrX:41453539-41453346 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 75

Conread position: 8-228
Cow position: chrX:25035145-25035363 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 186, 10

Conread position: 8-229
Cow position: chrX:19717749-19717539 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 8-231
Cow position: chrX:8642283-8642062 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 186, 153

Conread position: 8-233
Cow position: chrX:4327942-4328169 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 14, 121

Conread position: 8-233
Cow position: chrX:18204228-18204453 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 65, 38

Conread position: 8-233
Cow position: chrX:27668724-27668944 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 8-233
Cow position: chrX:37489967-37489733 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 134

Conread position: 8-233
Cow position: chrX:41941861-41941637 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 68, 0

Conread position: 8-234
Cow position: chrX:16763006-16762784 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 142, 77

Conread position: 8-234
Cow position: chrX:21328151-21327924 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 199, 11

Conread position: 8-234
Cow position: chrX:35285413-35285186 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 14, 0

Conread position: 8-234
Cow position: chrX:40680853-40680627 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 8-235
Cow position: chrX:4399356-4399138 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 124, 94

Conread position: 8-249
Cow position: chrX:8493305-8493062 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 34

Conread position: 8-250
Cow position: chrX:4403556-4403310 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 170, 232

Conread position: 8-251
Cow position: chrX:19394793-19394546 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 93, 104

Conread position: 8-251
Cow position: chrX:20957480-20957237 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 23, 229

Conread position: 8-256
Cow position: chrX:38321144-38321392 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 15, 103

Conread position: 9-131
Cow position: chrX:19161892-19162015 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 9-151
Cow position: chrX:42159180-42159037 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 9-185
Cow position: chrX:5915429-5915250 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 9-185
Cow position: chrX:11454411-11454248 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 9-185
Cow position: chrX:15545026-15545202 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 9-186
Cow position: chrX:5063473-5063306 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 9-231
Cow position: chrX:31480203-31479987 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 103, 0

Conread position: 9-231
Cow position: chrX:46532252-46532479 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 9-233
Cow position: chrX:42380875-42381098 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 89, 40

Conread position: 9-236
Cow position: chrX:29451309-29451538 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 10

Conread position: 9-250
Cow position: chrX:26843028-26843270 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 15, 228

Conread position: 9-251
Cow position: chrX:27431687-27431924 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 232, 37

Conread position: 9-254
Cow position: chrX:20168792-20168550 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 227, 41

Conread position: 10-167
Cow position: chrX:17929233-17929081 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 10-172
Cow position: chrX:13924098-13923939 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 10, 81

Conread position: 10-175
Cow position: chrX:15996587-15996749 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 73, 43

Conread position: 10-182
Cow position: chrX:14135911-14135743 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 125, 80

Conread position: 10-203
Cow position: chrX:20887414-20887597 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 116, 9

Conread position: 10-203
Cow position: chrX:26493243-26493050 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 184, 169

Conread position: 10-210
Cow position: chrX:42050033-42050233 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 134
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 10-233
Cow position: chrX:9201778-9201562 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 9

Conread position: 10-234
Cow position: chrX:11633918-11633695 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 100, 80

Conread position: 10-245
Cow position: chrX:31729673-31729442 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 225, 85

Conread position: 10-265
Cow position: chrX:38935515-38935266 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 169
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 28

Conread position: 10-270
Cow position: chrX:16984871-16984618 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 173
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 251, 89

Conread position: 10-270
Cow position: chrX:43008846-43008587 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 202, 211

Conread position: 11-249
Cow position: chrX:42836416-42836178 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 231, 99

Conread position: 13-179
Cow position: chrX:48574121-48574289 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 0

Conread position: 13-234
Cow position: chrX:8869170-8869389 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 78

Conread position: 18-182
Cow position: chrX:12197298-12197133 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 87, 34

Conread position: 18-222
Cow position: chrX:32867098-32866900 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 18-228
Cow position: chrX:19761977-19761773 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 0

Conread position: 18-234
Cow position: chrX:35269084-35268879 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 54, 35

Conread position: 19-140
Cow position: chrX:42220474-42220595 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 19-141
Cow position: chrX:6856087-6855965 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 93
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 19-168
Cow position: chrX:31279700-31279845 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 19-169
Cow position: chrX:11517751-11517902 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 19-169
Cow position: chrX:11602260-11602407 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 19-169
Cow position: chrX:34108131-34108280 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 19-169
Cow position: chrX:35614824-35614674 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 108
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 19-172
Cow position: chrX:3543092-3542931 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 19-172
Cow position: chrX:22284066-22283912 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 112, 0

Conread position: 19-172
Cow position: chrX:42506719-42506874 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 89, 0

Conread position: 19-175
Cow position: chrX:16770292-16770136 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 19-176
Cow position: chrX:41454726-41454883 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 19-177
Cow position: chrX:296619-296461 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 19-177
Cow position: chrX:4602711-4602868 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 150, 0

Conread position: 19-177
Cow position: chrX:6634572-6634414 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 19-177
Cow position: chrX:14951126-14951283 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 70

Conread position: 19-177
Cow position: chrX:15231432-15231590 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 19-177
Cow position: chrX:16412054-16412211 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 33

Conread position: 19-177
Cow position: chrX:25826912-25827065 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 19-177
Cow position: chrX:27416322-27416163 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 84, 154

Conread position: 19-177
Cow position: chrX:27442311-27442469 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 19-177
Cow position: chrX:33678243-33678403 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 89, 0

Conread position: 19-177
Cow position: chrX:34398556-34398714 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 19-177
Cow position: chrX:35431014-35431169 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 19-177
Cow position: chrX:38577871-38577715 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 90, 0

Conread position: 19-179
Cow position: chrX:5097567-5097731 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 28

Conread position: 19-179
Cow position: chrX:36367707-36367867 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 19-179
Cow position: chrX:40649129-40648963 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 19-179
Cow position: chrX:41215550-41215390 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 19-183
Cow position: chrX:4559961-4559797 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 19-183
Cow position: chrX:9451568-9451409 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 55

Conread position: 19-183
Cow position: chrX:40035215-40035376 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 19-184
Cow position: chrX:51675-51838 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 86, 0

Conread position: 19-184
Cow position: chrX:10251975-10252137 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 19-184
Cow position: chrX:39642401-39642559 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 19-184
Cow position: chrX:42087053-42086890 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 19-184
Cow position: chrX:42760480-42760315 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 19-184
Cow position: chrX:44040404-44040239 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 19-185
Cow position: chrX:3032814-3032981 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 19-185
Cow position: chrX:16323788-16323956 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 19-185
Cow position: chrX:17524156-17524322 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 19-185
Cow position: chrX:23497470-23497629 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 19-185
Cow position: chrX:40108286-40108456 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 19-185
Cow position: chrX:42875436-42875274 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 19-188
Cow position: chrX:44870209-44870373 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 28, 59

Conread position: 19-192
Cow position: chrX:16836067-16836234 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 19-195
Cow position: chrX:32215456-32215281 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 167, 0

Conread position: 19-196
Cow position: chrX:34991588-34991415 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 19-199
Cow position: chrX:32942853-32943028 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 19-201
Cow position: chrX:23335748-23335928 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 167, 0

Conread position: 19-202
Cow position: chrX:41790200-41790384 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 59, 67

Conread position: 19-203
Cow position: chrX:12095544-12095728 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 19-203
Cow position: chrX:19203118-19203302 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 175, 167

Conread position: 19-203
Cow position: chrX:27270596-27270419 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 134, 33

Conread position: 19-203
Cow position: chrX:35409979-35409796 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 175, 128

Conread position: 19-203
Cow position: chrX:36283567-36283384 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 175, 114

Conread position: 19-203
Cow position: chrX:48822115-48822298 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 88, 0

Conread position: 19-205
Cow position: chrX:11674339-11674152 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 165

Conread position: 19-209
Cow position: chrX:6480368-6480555 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 168, 0

Conread position: 19-209
Cow position: chrX:47100367-47100560 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 89, 0

Conread position: 19-210
Cow position: chrX:16555996-16556180 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 19-210
Cow position: chrX:37867481-37867290 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 175, 169

Conread position: 19-219
Cow position: chrX:23358890-23359083 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 19-222
Cow position: chrX:4109412-4109209 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 19-227
Cow position: chrX:40337138-40336931 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 167, 0

Conread position: 19-229
Cow position: chrX:23471641-23471848 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 194, 85

Conread position: 19-231
Cow position: chrX:4632627-4632842 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 116, 0

Conread position: 19-231
Cow position: chrX:7351528-7351316 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 74, 27

Conread position: 19-231
Cow position: chrX:20583887-20583682 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 27, 0

Conread position: 19-231
Cow position: chrX:26205231-26205432 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 175, 13

Conread position: 19-231
Cow position: chrX:36866400-36866189 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 175, 123

Conread position: 19-232
Cow position: chrX:35659021-35658814 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 19-233
Cow position: chrX:9251936-9252149 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 82, 0

Conread position: 19-233
Cow position: chrX:11656305-11656095 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 71, 0

Conread position: 19-233
Cow position: chrX:25207634-25207841 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 81, 0

Conread position: 19-233
Cow position: chrX:31250617-31250402 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 19-233
Cow position: chrX:34412075-34411860 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 63, 0

Conread position: 19-233
Cow position: chrX:37956072-37955861 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 175, 26

Conread position: 19-233
Cow position: chrX:40320635-40320420 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 143
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 19-233
Cow position: chrX:44055030-44054816 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 175, 167

Conread position: 19-234
Cow position: chrX:19018601-19018818 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 70, 169

Conread position: 19-234
Cow position: chrX:27261417-27261204 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 175, 28

Conread position: 19-234
Cow position: chrX:27446910-27446699 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 58, 0

Conread position: 19-234
Cow position: chrX:30672157-30672383 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 19-234
Cow position: chrX:38094299-38094503 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 19-234
Cow position: chrX:38964324-38964121 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 19-234
Cow position: chrX:42492294-42492510 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 112

Conread position: 19-234
Cow position: chrX:42855690-42855471 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 19-234
Cow position: chrX:42894149-42893937 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 186, 77

Conread position: 19-234
Cow position: chrX:43150658-43150440 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 175, 105

Conread position: 19-235
Cow position: chrX:38549674-38549457 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 13, 63

Conread position: 19-239
Cow position: chrX:33854999-33855212 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 209, 27

Conread position: 19-242
Cow position: chrX:17949265-17949490 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 195, 217

Conread position: 19-242
Cow position: chrX:32877152-32877369 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 19-242
Cow position: chrX:34314248-34314028 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 207, 66

Conread position: 19-242
Cow position: chrX:34377166-34376946 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 216, 83

Conread position: 19-243
Cow position: chrX:28940471-28940247 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 135, 80

Conread position: 19-245
Cow position: chrX:24332004-24331777 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 175, 167

Conread position: 19-246
Cow position: chrX:34504826-34505049 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 150, 70

Conread position: 19-249
Cow position: chrX:36393114-36393343 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 190, 152

Conread position: 19-250
Cow position: chrX:18486030-18485796 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 157, 101

Conread position: 19-250
Cow position: chrX:37072613-37072383 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 205, 84

Conread position: 19-251
Cow position: chrX:39290582-39290357 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 36, 74

Conread position: 19-251
Cow position: chrX:43115377-43115144 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 11, 83

Conread position: 19-254
Cow position: chrX:4996816-4996580 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 159
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 82

Conread position: 19-254
Cow position: chrX:13177257-13177484 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 186, 27

Conread position: 19-255
Cow position: chrX:17956916-17956685 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 70, 0

Conread position: 19-256
Cow position: chrX:4268843-4269074 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 176, 66

Conread position: 19-262
Cow position: chrX:22115087-22115330 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 36, 219

Conread position: 19-265
Cow position: chrX:4289661-4289426 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 166
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 176, 70

Conread position: 19-265
Cow position: chrX:6599547-6599797 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 64, 227

Conread position: 19-265
Cow position: chrX:24365595-24365838 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 175, 134

Conread position: 19-265
Cow position: chrX:29542001-29542232 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 19-265
Cow position: chrX:35986042-35985804 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 73, 26

Conread position: 19-272
Cow position: chrX:38218940-38218688 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 121, 71

Conread position: 19-280
Cow position: chrX:34792096-34792346 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 180, 26

Conread position: 19-290
Cow position: chrX:3580172-3579901 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 179
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 175, 167

Conread position: 19-291
Cow position: chrX:5919714-5919444 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 186
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 131, 26

Conread position: 20-153
Cow position: chrX:29723977-29723845 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 20-166
Cow position: chrX:42314663-42314811 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 20-177
Cow position: chrX:8917621-8917464 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 20-184
Cow position: chrX:28107072-28106910 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 20-184
Cow position: chrX:38968121-38967952 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 85, 157

Conread position: 20-185
Cow position: chrX:22552753-22552917 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 20-203
Cow position: chrX:41858658-41858838 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 106, 70

Conread position: 20-228
Cow position: chrX:2936179-2935976 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 20-232
Cow position: chrX:27508798-27509007 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 88, 116

Conread position: 20-233
Cow position: chrX:6559230-6559434 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 121, 0

Conread position: 20-233
Cow position: chrX:29050468-29050264 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 109, 33

Conread position: 20-234
Cow position: chrX:6407770-6407559 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 153, 0

Conread position: 20-250
Cow position: chrX:5118272-5118505 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 180, 95

Conread position: 20-251
Cow position: chrX:34554950-34554719 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 174, 166

Conread position: 20-252
Cow position: chrX:34836846-34837070 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 215, 29

Conread position: 21-162
Cow position: chrX:19356689-19356548 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 21-167
Cow position: chrX:35509455-35509599 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 21-168
Cow position: chrX:11670912-11670765 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 21-179
Cow position: chrX:29478947-29478792 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 21-179
Cow position: chrX:35841024-35840866 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 21-179
Cow position: chrX:37542314-37542470 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 21-184
Cow position: chrX:1101775-1101620 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 21-184
Cow position: chrX:14925498-14925335 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 21-184
Cow position: chrX:46588045-46587885 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 21-185
Cow position: chrX:12219371-12219207 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 115
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-185
Cow position: chrX:24335851-24336015 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 115
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-185
Cow position: chrX:25815674-25815839 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 78, 111

Conread position: 21-185
Cow position: chrX:26881854-26882018 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 21-185
Cow position: chrX:27175225-27175060 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 39, 0

Conread position: 21-185
Cow position: chrX:44859637-44859801 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-185
Cow position: chrX:48071387-48071223 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-186
Cow position: chrX:17498548-17498383 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 21-189
Cow position: chrX:37867658-37867490 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 21-191
Cow position: chrX:2674728-2674903 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 21-195
Cow position: chrX:1121141-1121315 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 21-195
Cow position: chrX:1396346-1396168 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 21-195
Cow position: chrX:24457322-24457496 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-202
Cow position: chrX:31983353-31983538 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 76, 172

Conread position: 21-203
Cow position: chrX:8759848-8759671 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 111, 137

Conread position: 21-203
Cow position: chrX:12290943-12290763 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 71, 0

Conread position: 21-203
Cow position: chrX:13347494-13347317 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 173, 126

Conread position: 21-203
Cow position: chrX:18030191-18030373 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 124
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-203
Cow position: chrX:35276211-35276029 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 21-203
Cow position: chrX:46068539-46068715 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 21-215
Cow position: chrX:18439222-18439028 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 130
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-217
Cow position: chrX:1960200-1960395 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 173, 69

Conread position: 21-218
Cow position: chrX:46910033-46909844 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 173, 31

Conread position: 21-221
Cow position: chrX:31250669-31250869 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 134
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 21-227
Cow position: chrX:28068076-28067870 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 21-232
Cow position: chrX:10516479-10516267 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 203, 0

Conread position: 21-233
Cow position: chrX:17293181-17292969 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 21-233
Cow position: chrX:18111604-18111392 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 88, 95

Conread position: 21-233
Cow position: chrX:25049056-25049268 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 21-233
Cow position: chrX:33654618-33654830 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 173, 165

Conread position: 21-233
Cow position: chrX:35885507-35885713 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 74, 0

Conread position: 21-233
Cow position: chrX:44339096-44339308 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 85, 26

Conread position: 21-234
Cow position: chrX:4645689-4645900 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 88, 0

Conread position: 21-234
Cow position: chrX:24170500-24170716 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 75, 136

Conread position: 21-234
Cow position: chrX:27705812-27705600 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 36, 45

Conread position: 21-234
Cow position: chrX:31948709-31948923 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 199, 0

Conread position: 21-234
Cow position: chrX:40826525-40826738 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 118

Conread position: 21-234
Cow position: chrX:42246956-42247169 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 21-237
Cow position: chrX:3494596-3494813 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 146
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 193, 200

Conread position: 21-244
Cow position: chrX:21642256-21642481 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 199, 0

Conread position: 21-249
Cow position: chrX:45403320-45403550 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 154
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 193, 200

Conread position: 21-250
Cow position: chrX:40574718-40574945 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 0

Conread position: 21-251
Cow position: chrX:30962650-30962886 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 103, 0

Conread position: 21-251
Cow position: chrX:48004071-48003844 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 155
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 193, 108

Conread position: 21-252
Cow position: chrX:46023000-46022768 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 157
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 193, 166

Conread position: 21-254
Cow position: chrX:20339670-20339899 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 215, 31

Conread position: 21-255
Cow position: chrX:17231962-17231729 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 103, 214

Conread position: 21-263
Cow position: chrX:26979566-26979801 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 96, 34

Conread position: 21-264
Cow position: chrX:11844011-11844262 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 171
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 21-269
Cow position: chrX:36109389-36109641 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 76, 0

Conread position: 22-154
Cow position: chrX:10479974-10479842 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 22-165
Cow position: chrX:43028453-43028314 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 22-170
Cow position: chrX:28167203-28167056 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 22-172
Cow position: chrX:4486800-4486949 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 88, 0

Conread position: 22-177
Cow position: chrX:22075019-22074870 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 22-184
Cow position: chrX:34270785-34270624 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 22-185
Cow position: chrX:1122323-1122485 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 22-185
Cow position: chrX:11653991-11653832 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 22-185
Cow position: chrX:32330395-32330228 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 128, 0

Conread position: 22-200
Cow position: chrX:8327129-8326951 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 172, 165

Conread position: 22-202
Cow position: chrX:27074827-27075006 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 22-233
Cow position: chrX:17795203-17794995 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 22-233
Cow position: chrX:27145823-27145618 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 63, 0

Conread position: 22-233
Cow position: chrX:44192218-44192433 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 22-234
Cow position: chrX:1175766-1175969 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 172, 53

Conread position: 22-234
Cow position: chrX:38302038-38301822 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 68, 169

Conread position: 22-234
Cow position: chrX:39220312-39220092 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 22-234
Cow position: chrX:41878713-41878917 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 22-234
Cow position: chrX:42449789-42450001 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 172, 165

Conread position: 22-245
Cow position: chrX:24749311-24749088 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 59

Conread position: 22-245
Cow position: chrX:26881338-26881565 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 43

Conread position: 22-248
Cow position: chrX:21986077-21986293 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 219, 62

Conread position: 22-250
Cow position: chrX:42927606-42927830 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 213, 41

Conread position: 22-251
Cow position: chrX:1087924-1088142 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 22-251
Cow position: chrX:29230231-29229995 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 63, 176

Conread position: 22-255
Cow position: chrX:47345554-47345321 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 76, 94

Conread position: 22-261
Cow position: chrX:6544469-6544242 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 210, 67

Conread position: 22-265
Cow position: chrX:22392764-22392999 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 23-183
Cow position: chrX:45759892-45759735 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 75

Conread position: 23-184
Cow position: chrX:40556240-40556396 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 107, 56

Conread position: 23-185
Cow position: chrX:15100201-15100045 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 23-203
Cow position: chrX:3606104-3605924 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 23-203
Cow position: chrX:35681790-35681611 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 87, 0

Conread position: 23-203
Cow position: chrX:37751888-37752062 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 23-228
Cow position: chrX:29601606-29601809 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 23-233
Cow position: chrX:15546104-15545896 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 23-233
Cow position: chrX:22921544-22921335 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 139
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 122, 0

Conread position: 23-233
Cow position: chrX:23563567-23563777 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 23-234
Cow position: chrX:25845850-25846060 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 142
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 23-234
Cow position: chrX:41027383-41027172 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 23-290
Cow position: chrX:9650804-9651072 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 179
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 211, 89

Conread position: 24-185
Cow position: chrX:27415366-27415518 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 24-185
Cow position: chrX:45139709-45139870 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 24-234
Cow position: chrX:15146977-15147180 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 25-179
Cow position: chrX:45044675-45044520 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 25-185
Cow position: chrX:46533083-46533243 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 25-186
Cow position: chrX:44123470-44123316 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 26-185
Cow position: chrX:20152068-20151918 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 26-185
Cow position: chrX:34544006-34543846 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 34, 0

Conread position: 27-250
Cow position: chrX:40685110-40685331 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 27-251
Cow position: chrX:31436688-31436468 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 197, 73

Conread position: 27-258
Cow position: chrX:19469296-19469519 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 208, 71

Conread position: 27-264
Cow position: chrX:1055162-1055395 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 157
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 28-187
Cow position: chrX:44995718-44995558 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 142, 0

Conread position: 29-185
Cow position: chrX:13868921-13868764 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 78, 55

Conread position: 29-185
Cow position: chrX:32821257-32821090 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 29-203
Cow position: chrX:20345668-20345494 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 29-228
Cow position: chrX:30922389-30922190 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 5

Conread position: 29-233
Cow position: chrX:7648195-7648396 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 101

Conread position: 29-233
Cow position: chrX:34420953-34420748 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 71, 61

Conread position: 30-176
Cow position: chrX:11678795-11678648 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 83, 54

Conread position: 30-177
Cow position: chrX:11813290-11813143 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 30-185
Cow position: chrX:10237697-10237851 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 85, 0

Conread position: 30-185
Cow position: chrX:31986356-31986512 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 137, 84

Conread position: 30-186
Cow position: chrX:10831265-10831429 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 60, 122

Conread position: 30-228
Cow position: chrX:41809959-41810149 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 30-255
Cow position: chrX:27228345-27228118 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 69, 0

Conread position: 31-177
Cow position: chrX:16007542-16007688 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-185
Cow position: chrX:13144662-13144508 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 31-233
Cow position: chrX:34238938-34238733 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 31-251
Cow position: chrX:4278904-4279120 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 21

Conread position: 33-234
Cow position: chrX:28877953-28878161 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 34-228
Cow position: chrX:32574528-32574336 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 160, 47

Conread position: 34-278
Cow position: chrX:12309173-12309419 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 201, 216

Conread position: 35-233
Cow position: chrX:36976163-36975966 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 183, 0

Conread position: 38-233
Cow position: chrX:22822263-22822060 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 75, 156

Conread position: 38-234
Cow position: chrX:31294361-31294559 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 39-265
Cow position: chrX:48474117-48473893 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 184

Conread position: 46-246
Cow position: chrX:11859336-11859538 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 68, 118

Conread position: 46-249
Cow position: chrX:44660388-44660593 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 85, 175

Conread position: 47-186
Cow position: chrX:34222912-34222777 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 53-234
Cow position: chrX:39180040-39180220 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 93, 0

Conread position: 55-199
Cow position: chrX:4515879-4515739 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 73, 57

Conread position: 85-232
Cow position: chrX:37129431-37129284 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.