Cow genome map

Conread name: Ss1.1-rnmm19c_k16.5

Conread position: 258-528
Cow position: chr20:2298516-2298773 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 189
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 11, 41

Conread position: 258-529
Cow position: chr20:23384580-23384311 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 143

Conread position: 262-504
Cow position: chr20:23358215-23358454 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 184

Conread position: 270-528
Cow position: chr20:4944983-4945238 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 115, 24

Conread position: 270-533
Cow position: chr20:11008440-11008179 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 178
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 114, 30

Conread position: 272-528
Cow position: chr20:29845319-29845064 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 112, 22

Conread position: 273-522
Cow position: chr20:5950373-5950623 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 12

Conread position: 273-522
Cow position: chr20:17251982-17251737 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 111, 20

Conread position: 274-529
Cow position: chr20:10200613-10200357 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 175
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 20

Conread position: 275-528
Cow position: chr20:4755570-4755821 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 170
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 149, 23

Conread position: 275-529
Cow position: chr20:31739952-31740207 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 107, 47

Conread position: 276-530
Cow position: chr20:13652116-13652357 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 244, 9

Conread position: 278-528
Cow position: chr20:10209069-10208821 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 206, 110

Conread position: 278-530
Cow position: chr20:16941022-16941275 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 86, 7

Conread position: 279-471
Cow position: chr20:26387717-26387531 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 280-528
Cow position: chr20:8556012-8556255 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 18, 0

Conread position: 281-527
Cow position: chr20:7425932-7426182 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 19, 116

Conread position: 281-528
Cow position: chr20:25009375-25009618 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 15, 0

Conread position: 282-466
Cow position: chr20:27315236-27315053 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 20, 109

Conread position: 282-475
Cow position: chr20:24491768-24491962 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 81

Conread position: 282-520
Cow position: chr20:32847600-32847366 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 24, 16

Conread position: 282-521
Cow position: chr20:14807141-14806907 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 82, 0

Conread position: 282-522
Cow position: chr20:3148936-3148703 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 282-522
Cow position: chr20:24070060-24069825 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 41, 0

Conread position: 282-522
Cow position: chr20:35444848-35445084 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 282-522
Cow position: chr20:42166530-42166760 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 68

Conread position: 282-528
Cow position: chr20:14283188-14282931 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 177
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 146

Conread position: 282-530
Cow position: chr20:4891861-4892106 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 16, 0

Conread position: 282-530
Cow position: chr20:28982957-28982713 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 27, 99

Conread position: 283-528
Cow position: chr20:24097252-24097014 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 73, 0

Conread position: 283-528
Cow position: chr20:35589427-35589677 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 99, 15

Conread position: 284-506
Cow position: chr20:19635922-19636141 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 51, 90

Conread position: 284-525
Cow position: chr20:2204427-2204669 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 112

Conread position: 284-527
Cow position: chr20:5702977-5702738 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 71, 14

Conread position: 285-458
Cow position: chr20:24883106-24883282 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 99, 13

Conread position: 285-526
Cow position: chr20:381879-382113 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 162
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 285-528
Cow position: chr20:11002659-11002407 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 97, 120

Conread position: 285-530
Cow position: chr20:23846410-23846653 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 166, 99

Conread position: 285-530
Cow position: chr20:25953521-25953274 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 97, 13

Conread position: 285-531
Cow position: chr20:34221736-34221489 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 97, 13

Conread position: 286-515
Cow position: chr20:36312260-36312482 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 49, 12

Conread position: 286-521
Cow position: chr20:3564405-3564180 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 286-524
Cow position: chr20:14620053-14620286 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 148, 26

Conread position: 286-527
Cow position: chr20:398059-398292 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 286-527
Cow position: chr20:33623306-33623538 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 49, 12

Conread position: 287-521
Cow position: chr20:23549010-23548768 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 95, 118

Conread position: 287-522
Cow position: chr20:11751904-11751673 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 97, 11

Conread position: 287-522
Cow position: chr20:25161880-25162106 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 204, 15

Conread position: 287-528
Cow position: chr20:12239438-12239668 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 215, 26

Conread position: 287-528
Cow position: chr20:20967574-20967334 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 78

Conread position: 290-520
Cow position: chr20:12126051-12126283 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 92, 0

Conread position: 291-525
Cow position: chr20:34202891-34202650 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 56, 134

Conread position: 294-528
Cow position: chr20:39743551-39743322 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 55

Conread position: 295-528
Cow position: chr20:38090161-38089926 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 159
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 87, 0

Conread position: 296-526
Cow position: chr20:21345682-21345443 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 7

Conread position: 296-528
Cow position: chr20:39398726-39398495 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 228, 0

Conread position: 298-473
Cow position: chr20:16977595-16977776 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 298-487
Cow position: chr20:2316185-2316371 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 76

Conread position: 298-492
Cow position: chr20:27407653-27407838 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 167, 27

Conread position: 298-493
Cow position: chr20:19201776-19201579 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 84, 123

Conread position: 298-505
Cow position: chr20:21325567-21325362 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 298-511
Cow position: chr20:20984239-20984022 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 298-522
Cow position: chr20:7737992-7738212 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 76, 0

Conread position: 298-525
Cow position: chr20:15766358-15766127 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 32, 224

Conread position: 298-526
Cow position: chr20:12420377-12420603 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 93, 0

Conread position: 298-527
Cow position: chr20:14433178-14433408 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 84, 98

Conread position: 298-527
Cow position: chr20:22065303-22065086 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 298-527
Cow position: chr20:38515031-38514793 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 86, 129

Conread position: 298-528
Cow position: chr20:14980265-14980496 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 155, 90

Conread position: 298-529
Cow position: chr20:18379619-18379391 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 64, 0

Conread position: 298-529
Cow position: chr20:33067117-33067347 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 154
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 226, 0

Conread position: 298-530
Cow position: chr20:38925607-38925841 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 84, 126

Conread position: 298-532
Cow position: chr20:32583563-32583327 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 84, 124

Conread position: 299-522
Cow position: chr20:20158372-20158155 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 74, 0

Conread position: 299-529
Cow position: chr20:3255275-3255051 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 110, 64

Conread position: 300-522
Cow position: chr20:8578495-8578268 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 300-528
Cow position: chr20:7438617-7438838 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 302-528
Cow position: chr20:12581718-12581941 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 107, 0

Conread position: 303-511
Cow position: chr20:14880023-14879819 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 121, 71

Conread position: 306-513
Cow position: chr20:39268848-39269057 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 29, 87

Conread position: 306-515
Cow position: chr20:24314803-24315007 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 306-529
Cow position: chr20:13269848-13269634 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 76, 0

Conread position: 312-500
Cow position: chr20:26040869-26041057 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 312-516
Cow position: chr20:40177472-40177270 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 312-519
Cow position: chr20:28605434-28605232 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 62, 0

Conread position: 312-525
Cow position: chr20:16291919-16291704 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 109

Conread position: 312-528
Cow position: chr20:8547288-8547081 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 116, 22

Conread position: 313-511
Cow position: chr20:16548045-16548248 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 314-496
Cow position: chr20:20590078-20590256 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 314-527
Cow position: chr20:2819774-2819559 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 58, 198

Conread position: 334-502
Cow position: chr20:630730-630564 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 338-519
Cow position: chr20:19060638-19060815 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 146, 52

Conread position: 338-527
Cow position: chr20:16935114-16935296 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 347-527
Cow position: chr20:17100551-17100377 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 365-529
Cow position: chr20:22030495-22030334 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 33

Conread position: 376-528
Cow position: chr20:38768298-38768447 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 92, 0

Show alignments to all cow chromosomes.