Cow genome map
| Conread name: | Ss1.1-rnmm19c_k16.5 |
| Conread position: | 182-511 |
| Cow position: | chr26:32834240-32834573 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 251-520 |
| Cow position: | chr26:7148042-7148310 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 268-528 |
| Cow position: | chr26:28251400-28251140 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 269-528 |
| Cow position: | chr26:22892205-22892458 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 270-504 |
| Cow position: | chr26:18825041-18825273 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 146, 15 |
| Conread position: | 270-529 |
| Cow position: | chr26:19636534-19636278 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 271-496 |
| Cow position: | chr26:12027991-12028220 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 150 |
| Conread position: | 271-529 |
| Cow position: | chr26:23623803-23624057 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 153, 32 |
| Conread position: | 273-526 |
| Cow position: | chr26:647479-647734 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 213 |
| Conread position: | 273-529 |
| Cow position: | chr26:3758025-3757775 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 275-527 |
| Cow position: | chr26:33201832-33202082 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 276-524 |
| Cow position: | chr26:21418214-21418462 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 20, 132 |
| Conread position: | 277-528 |
| Cow position: | chr26:9535750-9535505 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 277-529 |
| Cow position: | chr26:20824890-20825129 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 278-489 |
| Cow position: | chr26:34114501-34114288 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 142 |
| Conread position: | 278-506 |
| Cow position: | chr26:32517233-32517447 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 281-524 |
| Cow position: | chr26:28247080-28246832 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 125, 17 |
| Conread position: | 281-530 |
| Cow position: | chr26:28423513-28423270 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 240, 25 |
| Conread position: | 282-484 |
| Cow position: | chr26:12807074-12807269 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 142, 50 |
| Conread position: | 282-528 |
| Cow position: | chr26:18872845-18872597 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 124 |
| Conread position: | 282-528 |
| Cow position: | chr26:19446370-19446121 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 15, 173 |
| Conread position: | 282-528 |
| Cow position: | chr26:23848562-23848812 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 77 |
| Conread position: | 282-529 |
| Cow position: | chr26:26887903-26888147 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 21, 86 |
| Conread position: | 283-521 |
| Cow position: | chr26:20291461-20291698 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 283-522 |
| Cow position: | chr26:17057909-17057671 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 283-530 |
| Cow position: | chr26:32830314-32830068 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 101, 138 |
| Conread position: | 284-527 |
| Cow position: | chr26:5836589-5836832 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 28 |
| Conread position: | 285-458 |
| Cow position: | chr26:21320174-21320003 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 285-528 |
| Cow position: | chr26:11874999-11875233 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 285-528 |
| Cow position: | chr26:17212426-17212172 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 286-487 |
| Cow position: | chr26:8811701-8811500 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 125, 12 |
| Conread position: | 286-521 |
| Cow position: | chr26:5666267-5666042 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 287-500 |
| Cow position: | chr26:13862812-13863019 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 287-528 |
| Cow position: | chr26:6037195-6037448 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 171 |
| Conread position: | 287-530 |
| Cow position: | chr26:11672527-11672282 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 82, 135 |
| Conread position: | 288-489 |
| Cow position: | chr26:16585655-16585461 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 288-520 |
| Cow position: | chr26:16784050-16783819 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 293-528 |
| Cow position: | chr26:20260802-20260575 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 131, 96 |
| Conread position: | 294-530 |
| Cow position: | chr26:4584991-4585225 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 155 |
| Conread position: | 295-496 |
| Cow position: | chr26:15132859-15132656 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 106 |
| Conread position: | 295-528 |
| Cow position: | chr26:12144898-12145131 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 295-530 |
| Cow position: | chr26:8811349-8811111 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 206 |
| Conread position: | 297-522 |
| Cow position: | chr26:4854760-4854538 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 104, 91 |
| Conread position: | 297-522 |
| Cow position: | chr26:20770067-20769844 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 298-482 |
| Cow position: | chr26:13705553-13705744 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 109 |
| Conread position: | 298-489 |
| Cow position: | chr26:33038010-33038197 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 298-506 |
| Cow position: | chr26:34060551-34060342 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 298-522 |
| Cow position: | chr26:23925059-23924843 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 298-522 |
| Cow position: | chr26:31137250-31137471 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 40, 92 |
| Conread position: | 298-527 |
| Cow position: | chr26:1328650-1328868 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 298-527 |
| Cow position: | chr26:8307316-8307540 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 298-527 |
| Cow position: | chr26:34724659-34724883 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 298-528 |
| Cow position: | chr26:25526462-25526236 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 126, 76 |
| Conread position: | 298-529 |
| Cow position: | chr26:6714083-6714314 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 66, 201 |
| Conread position: | 298-529 |
| Cow position: | chr26:7314844-7314608 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 298-530 |
| Cow position: | chr26:33253101-33253330 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 298-530 |
| Cow position: | chr26:34610971-34611196 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 299-479 |
| Cow position: | chr26:33112171-33112350 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 110, 90 |
| Conread position: | 299-522 |
| Cow position: | chr26:12940622-12940393 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 299-522 |
| Cow position: | chr26:19591693-19591476 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 131, 79 |
| Conread position: | 301-522 |
| Cow position: | chr26:4167137-4167360 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 81, 121 |
| Conread position: | 302-479 |
| Cow position: | chr26:10700692-10700867 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 302-527 |
| Cow position: | chr26:16435439-16435668 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 20 |
| Conread position: | 302-530 |
| Cow position: | chr26:12893218-12893443 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 224, 72 |
| Conread position: | 302-532 |
| Cow position: | chr26:29900849-29901073 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 306-511 |
| Cow position: | chr26:9501917-9501713 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 306-527 |
| Cow position: | chr26:7687035-7687257 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 70, 87 |
| Conread position: | 312-519 |
| Cow position: | chr26:19671679-19671474 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 102 |
| Conread position: | 312-522 |
| Cow position: | chr26:32897678-32897876 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 312-527 |
| Cow position: | chr26:13802310-13802101 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 313-527 |
| Cow position: | chr26:27491295-27491510 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 69, 150 |
| Conread position: | 315-522 |
| Cow position: | chr26:6487593-6487806 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 167, 74 |
| Conread position: | 318-520 |
| Cow position: | chr26:29663958-29664164 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 318-528 |
| Cow position: | chr26:24240879-24240667 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 357-520 |
| Cow position: | chr26:33242045-33241884 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 357-527 |
| Cow position: | chr26:677824-677992 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 365-513 |
| Cow position: | chr26:31605554-31605408 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 365-522 |
| Cow position: | chr26:7212436-7212593 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 25 |
| Conread position: | 366-525 |
| Cow position: | chr26:13292668-13292509 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 374-531 |
| Cow position: | chr26:23582805-23582959 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.