Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 1-336 |
| Cow position: | chr10:33971590-33971236 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 2-437 |
| Cow position: | chr10:11501991-11501559 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 7-356 |
| Cow position: | chr10:53211051-53210699 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 8-360 |
| Cow position: | chr10:7500828-7501188 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 8-388 |
| Cow position: | chr10:8518329-8517935 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 39, 287 |
| Conread position: | 8-389 |
| Cow position: | chr10:56736018-56736400 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 157, 70 |
| Conread position: | 8-418 |
| Cow position: | chr10:39265243-39265671 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 286 |
| Conread position: | 8-465 |
| Cow position: | chr10:24336654-24337103 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 96, 49 |
| Conread position: | 9-417 |
| Cow position: | chr10:25922704-25923118 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 11-445 |
| Cow position: | chr10:25013157-25012715 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 11-483 |
| Cow position: | chr10:20124965-20125433 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 311 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 8, 342 |
| Conread position: | 13-334 |
| Cow position: | chr10:40739721-40739395 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 155 |
| Conread position: | 13-448 |
| Cow position: | chr10:9608767-9608332 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 147, 65 |
| Conread position: | 13-457 |
| Cow position: | chr10:28790919-28790482 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 15-356 |
| Cow position: | chr10:20935341-20934986 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 24-389 |
| Cow position: | chr10:27719987-27719617 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 59, 118 |
| Conread position: | 49-309 |
| Cow position: | chr10:7931403-7931144 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 79-322 |
| Cow position: | chr10:30447411-30447167 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 82-366 |
| Cow position: | chr10:21384196-21383926 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 83-477 |
| Cow position: | chr10:24099449-24099065 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 90-356 |
| Cow position: | chr10:5448101-5447833 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 106-348 |
| Cow position: | chr10:42398310-42398559 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 144 |
| Conread position: | 115-373 |
| Cow position: | chr10:3327110-3327367 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 43, 170 |
| Conread position: | 121-338 |
| Cow position: | chr10:48883215-48883436 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 121-357 |
| Cow position: | chr10:61882386-61882628 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 121-389 |
| Cow position: | chr10:23543087-23542825 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 121-389 |
| Cow position: | chr10:23865972-23865714 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 121-389 |
| Cow position: | chr10:51762517-51762247 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 121-445 |
| Cow position: | chr10:14902037-14902364 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 124-389 |
| Cow position: | chr10:28728010-28727742 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 41, 170 |
| Conread position: | 125-387 |
| Cow position: | chr10:48391171-48390912 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 136-389 |
| Cow position: | chr10:15485809-15486061 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 160, 40 |
| Conread position: | 137-327 |
| Cow position: | chr10:7317864-7317671 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 138-389 |
| Cow position: | chr10:51724776-51724519 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 142-389 |
| Cow position: | chr10:42430750-42430503 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 146-360 |
| Cow position: | chr10:56451534-56451750 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 134 |
| Conread position: | 167-448 |
| Cow position: | chr10:9100961-9100680 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 101, 105 |
| Conread position: | 171-357 |
| Cow position: | chr10:3812852-3812668 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 172-389 |
| Cow position: | chr10:12937989-12938204 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 183-417 |
| Cow position: | chr10:47737414-47737183 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 144, 79 |
| Conread position: | 186-389 |
| Cow position: | chr10:39837921-39837723 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 189, 134 |
| Conread position: | 187-448 |
| Cow position: | chr10:30612568-30612827 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 201, 132 |
| Conread position: | 199-455 |
| Cow position: | chr10:9876126-9876380 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 190, 13 |
Show alignments to all cow chromosomes.