Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 1-296 |
| Cow position: | chr11:52134301-52134012 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 8 |
| Conread position: | 1-389 |
| Cow position: | chr11:52889103-52889507 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 193 |
| Conread position: | 8-389 |
| Cow position: | chr11:26121673-26121299 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 150, 76 |
| Conread position: | 8-419 |
| Cow position: | chr11:68664245-68664653 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 9-389 |
| Cow position: | chr11:52248129-52248517 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 13-356 |
| Cow position: | chr11:55422987-55423332 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 13-389 |
| Cow position: | chr11:31609429-31609801 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 39, 67 |
| Conread position: | 14-356 |
| Cow position: | chr11:25776823-25776465 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 252 |
| Conread position: | 18-356 |
| Cow position: | chr11:35240383-35240735 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 68 |
| Conread position: | 23-389 |
| Cow position: | chr11:16069891-16069524 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 28-388 |
| Cow position: | chr11:66258786-66259153 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 72, 156 |
| Conread position: | 31-389 |
| Cow position: | chr11:37945811-37946165 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 47-423 |
| Cow position: | chr11:49248003-49248371 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 68-371 |
| Cow position: | chr11:45568868-45568568 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 77-397 |
| Cow position: | chr11:40500453-40500773 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 79-445 |
| Cow position: | chr11:82558703-82559076 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 82-474 |
| Cow position: | chr11:75370005-75370409 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 89-347 |
| Cow position: | chr11:38321943-38322201 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 119 |
| Conread position: | 100-442 |
| Cow position: | chr11:75941047-75941377 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 106-360 |
| Cow position: | chr11:4306557-4306814 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 54, 8 |
| Conread position: | 106-465 |
| Cow position: | chr11:46027813-46028177 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 8 |
| Conread position: | 114-422 |
| Cow position: | chr11:16884724-16884412 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 121-389 |
| Cow position: | chr11:2752662-2752931 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 121-390 |
| Cow position: | chr11:13887779-13887505 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 162 |
| Conread position: | 122-341 |
| Cow position: | chr11:40642946-40643168 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 123-382 |
| Cow position: | chr11:74193529-74193265 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 35, 155 |
| Conread position: | 124-385 |
| Cow position: | chr11:57011998-57012258 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 204 |
| Conread position: | 126-486 |
| Cow position: | chr11:84742233-84742595 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 109 |
| Conread position: | 137-367 |
| Cow position: | chr11:9960270-9960035 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 138-367 |
| Cow position: | chr11:65682533-65682766 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 138-391 |
| Cow position: | chr11:23764255-23764508 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 138-391 |
| Cow position: | chr11:85679927-85680184 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 232 |
| Conread position: | 150-389 |
| Cow position: | chr11:40491869-40492113 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 13, 215 |
| Conread position: | 157-422 |
| Cow position: | chr11:10807723-10807450 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 165-417 |
| Cow position: | chr11:35150244-35149988 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 223, 112 |
| Conread position: | 166-357 |
| Cow position: | chr11:35630171-35630363 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 166-382 |
| Cow position: | chr11:76426571-76426786 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 188 |
| Conread position: | 167-356 |
| Cow position: | chr11:15437455-15437642 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 167-372 |
| Cow position: | chr11:33816075-33816282 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 167-381 |
| Cow position: | chr11:39529965-39530176 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 171-349 |
| Cow position: | chr11:51131405-51131583 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-383 |
| Cow position: | chr11:10154832-10154623 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 171-408 |
| Cow position: | chr11:25135416-25135649 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 188 |
| Conread position: | 173-349 |
| Cow position: | chr11:45417184-45417358 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 173-483 |
| Cow position: | chr11:44529605-44529918 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 73 |
| Conread position: | 180-356 |
| Cow position: | chr11:65110639-65110813 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 186-419 |
| Cow position: | chr11:20970623-20970852 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 194, 9 |
| Conread position: | 189-360 |
| Cow position: | chr11:74750003-74750170 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 189-388 |
| Cow position: | chr11:9714502-9714303 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 100, 89 |
| Conread position: | 207-360 |
| Cow position: | chr11:9385683-9385530 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-388 |
| Cow position: | chr11:34572392-34572214 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 78, 71 |
Show alignments to all cow chromosomes.