Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 3-389 |
| Cow position: | chr13:38625517-38625915 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 7-360 |
| Cow position: | chr13:11990185-11989823 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 8-291 |
| Cow position: | chr13:41398119-41398406 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 8-335 |
| Cow position: | chr13:27204618-27204956 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 8-342 |
| Cow position: | chr13:21587857-21588190 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 8-343 |
| Cow position: | chr13:41566845-41566506 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 75 |
| Conread position: | 8-388 |
| Cow position: | chr13:32659304-32658908 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 113 |
| Conread position: | 8-389 |
| Cow position: | chr13:571150-571549 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 120 |
| Conread position: | 8-389 |
| Cow position: | chr13:22189197-22189591 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 70, 117 |
| Conread position: | 8-413 |
| Cow position: | chr13:10391943-10391532 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 281 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 30, 81 |
| Conread position: | 13-356 |
| Cow position: | chr13:31657013-31656658 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 65, 138 |
| Conread position: | 13-471 |
| Cow position: | chr13:39629704-39629249 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 40, 98 |
| Conread position: | 19-393 |
| Cow position: | chr13:21832460-21832830 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 24-383 |
| Cow position: | chr13:17048905-17048546 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 30-360 |
| Cow position: | chr13:21264739-21265084 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 76-314 |
| Cow position: | chr13:35695619-35695857 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 79-317 |
| Cow position: | chr13:12877688-12877442 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 88, 24 |
| Conread position: | 79-389 |
| Cow position: | chr13:33584512-33584818 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 83-437 |
| Cow position: | chr13:19154725-19154375 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 89-356 |
| Cow position: | chr13:17102650-17102376 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 79, 129 |
| Conread position: | 121-356 |
| Cow position: | chr13:13289561-13289321 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 37, 162 |
| Conread position: | 121-367 |
| Cow position: | chr13:6900515-6900266 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 121-368 |
| Cow position: | chr13:7547563-7547811 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 121-384 |
| Cow position: | chr13:18474286-18474020 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 121-389 |
| Cow position: | chr13:54242407-54242132 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 122-389 |
| Cow position: | chr13:35766424-35766695 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 87 |
| Conread position: | 124-356 |
| Cow position: | chr13:12906986-12907227 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 124-360 |
| Cow position: | chr13:14070700-14070935 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 131, 42 |
| Conread position: | 146-398 |
| Cow position: | chr13:51190854-51191103 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 157-413 |
| Cow position: | chr13:7542599-7542348 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 158-445 |
| Cow position: | chr13:6148596-6148870 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 217, 77 |
| Conread position: | 165-356 |
| Cow position: | chr13:15296300-15296490 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 165-381 |
| Cow position: | chr13:3150242-3150029 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 210, 130 |
| Conread position: | 171-343 |
| Cow position: | chr13:18749129-18748957 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 166, 9 |
| Conread position: | 171-382 |
| Cow position: | chr13:42039064-42039275 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 183, 41 |
| Conread position: | 171-389 |
| Cow position: | chr13:34094423-34094205 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 171-418 |
| Cow position: | chr13:44634953-44634707 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 220, 25 |
| Conread position: | 172-380 |
| Cow position: | chr13:26259740-26259949 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 175-389 |
| Cow position: | chr13:42319941-42320154 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 180-360 |
| Cow position: | chr13:56717536-56717712 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 186-356 |
| Cow position: | chr13:31656653-31656485 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 104, 94 |
| Conread position: | 187-389 |
| Cow position: | chr13:22569147-22568945 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 188, 177 |
| Conread position: | 228-417 |
| Cow position: | chr13:37584879-37585073 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.