Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 4-423 |
| Cow position: | chr17:38364626-38365064 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 65, 121 |
| Conread position: | 8-310 |
| Cow position: | chr17:23663175-23663483 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 70, 101 |
| Conread position: | 8-382 |
| Cow position: | chr17:45859-45468 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 97 |
| Conread position: | 8-448 |
| Cow position: | chr17:31949134-31948669 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 57, 116 |
| Conread position: | 8-478 |
| Cow position: | chr17:22500797-22501269 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 70, 113 |
| Conread position: | 11-356 |
| Cow position: | chr17:3490165-3490516 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 29, 25 |
| Conread position: | 11-484 |
| Cow position: | chr17:28235427-28235899 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 309 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 154, 67 |
| Conread position: | 13-441 |
| Cow position: | chr17:41704545-41704094 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 300 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 65, 111 |
| Conread position: | 23-388 |
| Cow position: | chr17:2142729-2143111 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 54, 213 |
| Conread position: | 78-322 |
| Cow position: | chr17:42001553-42001790 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 27, 87 |
| Conread position: | 82-387 |
| Cow position: | chr17:4105278-4105583 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 83-389 |
| Cow position: | chr17:11941878-11942187 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 80, 28 |
| Conread position: | 110-389 |
| Cow position: | chr17:16025981-16026264 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 53, 173 |
| Conread position: | 112-380 |
| Cow position: | chr17:25560271-25560544 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 114-360 |
| Cow position: | chr17:39868562-39868322 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 120 |
| Conread position: | 121-385 |
| Cow position: | chr17:9660793-9660529 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 153 |
| Conread position: | 121-388 |
| Cow position: | chr17:5389782-5390053 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 179 |
| Conread position: | 138-319 |
| Cow position: | chr17:36718239-36718056 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 138-389 |
| Cow position: | chr17:24309741-24310000 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 20, 150 |
| Conread position: | 145-387 |
| Cow position: | chr17:4121073-4121318 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 145-448 |
| Cow position: | chr17:30752375-30752685 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 165-356 |
| Cow position: | chr17:28034705-28034895 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 118, 93 |
| Conread position: | 165-388 |
| Cow position: | chr17:18595507-18595729 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 114 |
| Conread position: | 167-386 |
| Cow position: | chr17:32024261-32024044 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 171-356 |
| Cow position: | chr17:44330822-44331007 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 148, 156 |
| Conread position: | 171-434 |
| Cow position: | chr17:16667243-16666985 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 117, 109 |
| Conread position: | 171-441 |
| Cow position: | chr17:18834161-18833896 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 243, 64 |
| Conread position: | 171-449 |
| Cow position: | chr17:3729974-3729695 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 109 |
| Conread position: | 172-360 |
| Cow position: | chr17:12470956-12471142 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 157, 64 |
| Conread position: | 172-372 |
| Cow position: | chr17:26842803-26842604 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 172-389 |
| Cow position: | chr17:18898832-18898610 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 113 |
| Conread position: | 172-463 |
| Cow position: | chr17:18851421-18851703 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 117, 25 |
| Conread position: | 174-367 |
| Cow position: | chr17:18840784-18840592 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 69 |
Show alignments to all cow chromosomes.