Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 4-309 |
| Cow position: | chr18:22482292-22482597 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 27 |
| Conread position: | 4-349 |
| Cow position: | chr18:41249698-41250035 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 8-356 |
| Cow position: | chr18:37861247-37860902 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 8-382 |
| Cow position: | chr18:7085183-7085569 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 330 |
| Conread position: | 8-388 |
| Cow position: | chr18:25835816-25836199 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 92, 200 |
| Conread position: | 8-392 |
| Cow position: | chr18:37398622-37399017 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 70, 246 |
| Conread position: | 13-295 |
| Cow position: | chr18:26642274-26642577 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 65, 211 |
| Conread position: | 13-360 |
| Cow position: | chr18:21455720-21456072 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 13-442 |
| Cow position: | chr18:42362401-42362834 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 290 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 86, 224 |
| Conread position: | 14-448 |
| Cow position: | chr18:19650157-19649748 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 295 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 27-389 |
| Cow position: | chr18:34210562-34210189 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 73, 310 |
| Conread position: | 78-350 |
| Cow position: | chr18:3229473-3229737 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 79-334 |
| Cow position: | chr18:38087152-38086897 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 79-349 |
| Cow position: | chr18:51247369-51247642 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 79-383 |
| Cow position: | chr18:158902-158600 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 29 |
| Conread position: | 79-385 |
| Cow position: | chr18:35851190-35850888 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 86, 32 |
| Conread position: | 80-389 |
| Cow position: | chr18:20755457-20755147 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 86, 30 |
| Conread position: | 106-372 |
| Cow position: | chr18:50248863-50248598 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 114-407 |
| Cow position: | chr18:36414373-36414668 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 169 |
| Conread position: | 115-453 |
| Cow position: | chr18:19534825-19534480 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 117-466 |
| Cow position: | chr18:54147561-54147915 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 121-386 |
| Cow position: | chr18:17153238-17153506 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 44, 158 |
| Conread position: | 121-387 |
| Cow position: | chr18:18091183-18090912 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 121-389 |
| Cow position: | chr18:33373239-33373512 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 156 |
| Conread position: | 127-447 |
| Cow position: | chr18:28189411-28189080 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 137-389 |
| Cow position: | chr18:53019249-53018991 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 147-476 |
| Cow position: | chr18:42757176-42757487 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 162-384 |
| Cow position: | chr18:14143140-14143365 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 119 |
| Conread position: | 165-419 |
| Cow position: | chr18:41720862-41721121 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 223, 159 |
| Conread position: | 165-442 |
| Cow position: | chr18:30198615-30198887 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 162, 32 |
| Conread position: | 171-382 |
| Cow position: | chr18:26014608-26014396 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 53, 205 |
| Conread position: | 172-385 |
| Cow position: | chr18:36785135-36785348 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 172-397 |
| Cow position: | chr18:51331639-51331860 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 65 |
| Conread position: | 173-444 |
| Cow position: | chr18:9860717-9860452 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 180-356 |
| Cow position: | chr18:51031903-51031727 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 183-355 |
| Cow position: | chr18:16233075-16232903 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-392 |
| Cow position: | chr18:28817815-28817617 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
Show alignments to all cow chromosomes.