Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 1-335 |
| Cow position: | chr2:272832-273155 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 155, 17 |
| Conread position: | 1-387 |
| Cow position: | chr2:29188414-29188021 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 7 |
| Conread position: | 5-391 |
| Cow position: | chr2:51303844-51303450 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 21 |
| Conread position: | 8-316 |
| Cow position: | chr2:24154171-24154493 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 70, 50 |
| Conread position: | 8-341 |
| Cow position: | chr2:80439821-80440168 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 70, 114 |
| Conread position: | 8-381 |
| Cow position: | chr2:41050674-41050295 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 8-389 |
| Cow position: | chr2:16723479-16723869 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 11-356 |
| Cow position: | chr2:73777992-73777647 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 12 |
| Conread position: | 13-356 |
| Cow position: | chr2:27164211-27163867 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 13-356 |
| Cow position: | chr2:64204259-64204602 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 13-389 |
| Cow position: | chr2:14405570-14405960 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 192 |
| Conread position: | 13-389 |
| Cow position: | chr2:15691062-15691452 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 65, 107 |
| Conread position: | 13-389 |
| Cow position: | chr2:84489790-84489401 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 369 |
| Conread position: | 13-464 |
| Cow position: | chr2:34664692-34664241 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 23-297 |
| Cow position: | chr2:76123251-76122973 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 140, 89 |
| Conread position: | 24-385 |
| Cow position: | chr2:49317188-49316808 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 54, 187 |
| Conread position: | 69-360 |
| Cow position: | chr2:9358053-9357758 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 10 |
| Conread position: | 79-360 |
| Cow position: | chr2:2530267-2529993 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 32 |
| Conread position: | 79-360 |
| Cow position: | chr2:64222024-64221740 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 79-389 |
| Cow position: | chr2:44439841-44439544 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 82-399 |
| Cow position: | chr2:79240016-79239696 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 17 |
| Conread position: | 83-382 |
| Cow position: | chr2:43741377-43741085 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 87-382 |
| Cow position: | chr2:34685679-34685382 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 88-360 |
| Cow position: | chr2:44969666-44969938 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 88-448 |
| Cow position: | chr2:70784249-70783885 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 114-391 |
| Cow position: | chr2:38494877-38494594 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 120-389 |
| Cow position: | chr2:44469167-44468899 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 121-359 |
| Cow position: | chr2:1661621-1661862 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 121-383 |
| Cow position: | chr2:31737161-31736895 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 114 |
| Conread position: | 121-389 |
| Cow position: | chr2:62668161-62668426 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 121-432 |
| Cow position: | chr2:84442654-84442970 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 121-448 |
| Cow position: | chr2:14460231-14459898 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 123-388 |
| Cow position: | chr2:31870561-31870295 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 167 |
| Conread position: | 124-360 |
| Cow position: | chr2:5694300-5694066 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 74 |
| Conread position: | 125-399 |
| Cow position: | chr2:14792358-14792631 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 126-388 |
| Cow position: | chr2:76615682-76615951 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 166 |
| Conread position: | 138-463 |
| Cow position: | chr2:56714065-56713735 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 103 |
| Conread position: | 144-333 |
| Cow position: | chr2:19584560-19584753 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 145-385 |
| Cow position: | chr2:76783917-76784159 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 147-388 |
| Cow position: | chr2:11956480-11956720 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 160-355 |
| Cow position: | chr2:15256979-15256784 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 125, 118 |
| Conread position: | 171-327 |
| Cow position: | chr2:60716264-60716108 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 138 |
| Conread position: | 171-368 |
| Cow position: | chr2:59204835-59205025 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 119, 109 |
| Conread position: | 171-384 |
| Cow position: | chr2:68193524-68193737 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 98, 26 |
| Conread position: | 171-389 |
| Cow position: | chr2:72162307-72162085 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 171-389 |
| Cow position: | chr2:86003405-86003619 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 87, 72 |
| Conread position: | 172-389 |
| Cow position: | chr2:55473990-55473772 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 180-367 |
| Cow position: | chr2:69136785-69136601 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 186-471 |
| Cow position: | chr2:3905906-3905618 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 189, 115 |
| Conread position: | 187-423 |
| Cow position: | chr2:5477843-5477601 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 188, 165 |
| Conread position: | 188-388 |
| Cow position: | chr2:16385990-16385792 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 90 |
| Conread position: | 202-389 |
| Cow position: | chr2:32928962-32928775 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-445 |
| Cow position: | chr2:14332586-14332796 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 147, 160 |
Show alignments to all cow chromosomes.