Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 8-354 |
| Cow position: | chr24:8886195-8886540 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 150, 62 |
| Conread position: | 8-360 |
| Cow position: | chr24:19711263-19711628 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 70, 77 |
| Conread position: | 8-441 |
| Cow position: | chr24:16537415-16536977 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 8-464 |
| Cow position: | chr24:6203327-6203797 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 309 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 70, 17 |
| Conread position: | 12-389 |
| Cow position: | chr24:15344424-15344796 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 151, 32 |
| Conread position: | 13-332 |
| Cow position: | chr24:384552-384885 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 59, 142 |
| Conread position: | 18-393 |
| Cow position: | chr24:16171287-16171661 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 104, 49 |
| Conread position: | 20-394 |
| Cow position: | chr24:35617441-35617822 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 31-360 |
| Cow position: | chr24:42916173-42915835 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 69, 123 |
| Conread position: | 70-389 |
| Cow position: | chr24:22643286-22643602 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 37 |
| Conread position: | 79-356 |
| Cow position: | chr24:34482398-34482677 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 82-348 |
| Cow position: | chr24:11957298-11957030 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 101-445 |
| Cow position: | chr24:31449112-31449448 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 106-386 |
| Cow position: | chr24:33031735-33032022 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 114-392 |
| Cow position: | chr24:31185382-31185663 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 170 |
| Conread position: | 121-360 |
| Cow position: | chr24:7189296-7189054 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 121-387 |
| Cow position: | chr24:30278154-30278419 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 121-389 |
| Cow position: | chr24:21555436-21555706 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 163 |
| Conread position: | 122-382 |
| Cow position: | chr24:9491873-9491608 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 253 |
| Conread position: | 125-463 |
| Cow position: | chr24:40692853-40693181 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 173 |
| Conread position: | 146-389 |
| Cow position: | chr24:20120617-20120367 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 15, 139 |
| Conread position: | 157-389 |
| Cow position: | chr24:35845495-35845264 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 165-389 |
| Cow position: | chr24:37961793-37962011 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 165-389 |
| Cow position: | chr24:37962633-37962851 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 167-349 |
| Cow position: | chr24:33010630-33010452 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 167-383 |
| Cow position: | chr24:34197287-34197502 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 185, 192 |
| Conread position: | 171-476 |
| Cow position: | chr24:39048682-39048369 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 172-363 |
| Cow position: | chr24:11937445-11937256 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 172-367 |
| Cow position: | chr24:27607301-27607107 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 117, 107 |
| Conread position: | 180-356 |
| Cow position: | chr24:5260171-5260349 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 101 |
| Conread position: | 180-360 |
| Cow position: | chr24:26901727-26901908 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 181-348 |
| Cow position: | chr24:43658851-43659018 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 156, 69 |
| Conread position: | 186-392 |
| Cow position: | chr24:39448352-39448141 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 214-389 |
| Cow position: | chr24:18381508-18381331 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.