Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 3-448 |
| Cow position: | chr3:27531351-27530885 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 4-333 |
| Cow position: | chr3:57531594-57531925 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 102, 74 |
| Conread position: | 8-383 |
| Cow position: | chr3:37909692-37909304 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 118, 335 |
| Conread position: | 8-384 |
| Cow position: | chr3:30003781-30004161 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 49 |
| Conread position: | 8-392 |
| Cow position: | chr3:60262698-60262327 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 122, 44 |
| Conread position: | 8-462 |
| Cow position: | chr3:62246755-62246294 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 303 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 80, 312 |
| Conread position: | 11-391 |
| Cow position: | chr3:77370023-77369641 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 11-424 |
| Cow position: | chr3:4780666-4781070 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 146, 69 |
| Conread position: | 11-453 |
| Cow position: | chr3:62213573-62213137 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 67, 170 |
| Conread position: | 13-367 |
| Cow position: | chr3:35196901-35197262 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 137 |
| Conread position: | 14-311 |
| Cow position: | chr3:11542822-11543131 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 85, 212 |
| Conread position: | 36-389 |
| Cow position: | chr3:67451634-67452003 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 79-389 |
| Cow position: | chr3:58104804-58105125 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 79-444 |
| Cow position: | chr3:21652538-21652909 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 31 |
| Conread position: | 82-383 |
| Cow position: | chr3:19803868-19804173 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 81, 29 |
| Conread position: | 82-389 |
| Cow position: | chr3:18758853-18758548 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 135, 30 |
| Conread position: | 112-421 |
| Cow position: | chr3:59465590-59465900 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 120-424 |
| Cow position: | chr3:14802001-14802314 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 164 |
| Conread position: | 121-337 |
| Cow position: | chr3:73945170-73944941 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 42, 89 |
| Conread position: | 121-389 |
| Cow position: | chr3:17413183-17413456 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 121-421 |
| Cow position: | chr3:80307788-80308084 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 124-356 |
| Cow position: | chr3:80631600-80631364 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 41, 138 |
| Conread position: | 137-337 |
| Cow position: | chr3:67534674-67534876 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 138-387 |
| Cow position: | chr3:25169739-25169991 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 157-445 |
| Cow position: | chr3:11891293-11891582 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 218, 124 |
| Conread position: | 165-354 |
| Cow position: | chr3:14717278-14717467 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 113 |
| Conread position: | 171-382 |
| Cow position: | chr3:58443736-58443521 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 118, 107 |
| Conread position: | 171-391 |
| Cow position: | chr3:39971732-39971512 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 107 |
| Conread position: | 171-391 |
| Cow position: | chr3:66134191-66133971 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-392 |
| Cow position: | chr3:36727671-36727890 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 118, 9 |
| Conread position: | 171-413 |
| Cow position: | chr3:9780462-9780224 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 126, 109 |
| Conread position: | 172-350 |
| Cow position: | chr3:24191798-24191620 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 172-384 |
| Cow position: | chr3:18528048-18528258 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 172-388 |
| Cow position: | chr3:66409627-66409411 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 174, 167 |
| Conread position: | 172-389 |
| Cow position: | chr3:54119501-54119285 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 117, 106 |
| Conread position: | 172-453 |
| Cow position: | chr3:48997682-48997969 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 173-355 |
| Cow position: | chr3:16719645-16719465 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 174-388 |
| Cow position: | chr3:38887960-38888169 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 67 |
| Conread position: | 180-383 |
| Cow position: | chr3:62911219-62911015 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 180-443 |
| Cow position: | chr3:62259144-62258892 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 181-449 |
| Cow position: | chr3:15201490-15201765 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 98 |
| Conread position: | 191-360 |
| Cow position: | chr3:80532523-80532689 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 207-419 |
| Cow position: | chr3:71225615-71225406 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 211-359 |
| Cow position: | chr3:23751255-23751404 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 223-485 |
| Cow position: | chr3:75754012-75753753 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 105, 164 |
Show alignments to all cow chromosomes.