Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 7-359 |
| Cow position: | chr5:26568210-26567867 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 167, 30 |
| Conread position: | 7-389 |
| Cow position: | chr5:45168407-45168012 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 77, 288 |
| Conread position: | 8-448 |
| Cow position: | chr5:63587848-63588294 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 233 |
| Conread position: | 8-492 |
| Cow position: | chr5:45875336-45874835 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 309 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 9-360 |
| Cow position: | chr5:5441391-5441750 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 46, 181 |
| Conread position: | 13-348 |
| Cow position: | chr5:49070440-49070096 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 109 |
| Conread position: | 13-448 |
| Cow position: | chr5:5393477-5393912 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 65, 95 |
| Conread position: | 27-389 |
| Cow position: | chr5:42918846-42918468 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 77-394 |
| Cow position: | chr5:23641567-23641243 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 5 |
| Conread position: | 79-356 |
| Cow position: | chr5:13410289-13410570 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 73 |
| Conread position: | 79-392 |
| Cow position: | chr5:73069423-73069108 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 80-356 |
| Cow position: | chr5:72600889-72601165 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 84-389 |
| Cow position: | chr5:42232275-42231970 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 87-359 |
| Cow position: | chr5:17888076-17887800 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 106-389 |
| Cow position: | chr5:60490619-60490339 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 110-392 |
| Cow position: | chr5:62362680-62362968 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 92 |
| Conread position: | 123-348 |
| Cow position: | chr5:20775948-20775724 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 157 |
| Conread position: | 124-341 |
| Cow position: | chr5:40226712-40226933 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 124-389 |
| Cow position: | chr5:67623611-67623883 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 39, 220 |
| Conread position: | 127-303 |
| Cow position: | chr5:60674994-60675175 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 136-389 |
| Cow position: | chr5:66982968-66983222 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 146-383 |
| Cow position: | chr5:68469191-68468947 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 147-389 |
| Cow position: | chr5:65275755-65275993 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 6, 163 |
| Conread position: | 147-481 |
| Cow position: | chr5:16309104-16309438 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 165-356 |
| Cow position: | chr5:75374338-75374148 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 124 |
| Conread position: | 166-389 |
| Cow position: | chr5:15764926-15765145 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 68 |
| Conread position: | 171-356 |
| Cow position: | chr5:69626409-69626593 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 148, 73 |
| Conread position: | 171-359 |
| Cow position: | chr5:6064127-6063935 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 171-389 |
| Cow position: | chr5:30793363-30793581 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 120, 112 |
| Conread position: | 171-399 |
| Cow position: | chr5:63828163-63827937 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 221, 98 |
| Conread position: | 171-419 |
| Cow position: | chr5:64389065-64389316 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 245 |
| Conread position: | 171-436 |
| Cow position: | chr5:4438213-4438482 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 94 |
| Conread position: | 171-453 |
| Cow position: | chr5:37715069-37714785 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 118, 109 |
| Conread position: | 174-476 |
| Cow position: | chr5:36223460-36223171 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 180-442 |
| Cow position: | chr5:57791503-57791245 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 134, 78 |
| Conread position: | 183-355 |
| Cow position: | chr5:34961744-34961574 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.