Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 3-385 |
| Cow position: | chr7:57821292-57820910 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 67, 325 |
| Conread position: | 3-463 |
| Cow position: | chr7:42505630-42506097 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 5-362 |
| Cow position: | chr7:66136402-66136771 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 72, 235 |
| Conread position: | 8-287 |
| Cow position: | chr7:29509342-29509629 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 72, 109 |
| Conread position: | 8-328 |
| Cow position: | chr7:30715864-30715545 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 158, 71 |
| Conread position: | 8-348 |
| Cow position: | chr7:21914768-21915115 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 71 |
| Conread position: | 8-356 |
| Cow position: | chr7:25015995-25015632 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 70, 237 |
| Conread position: | 8-465 |
| Cow position: | chr7:25024702-25024222 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 70, 237 |
| Conread position: | 9-389 |
| Cow position: | chr7:54895614-54895225 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 44 |
| Conread position: | 11-389 |
| Cow position: | chr7:31638136-31638524 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 12 |
| Conread position: | 13-315 |
| Cow position: | chr7:8605134-8605442 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 14-391 |
| Cow position: | chr7:1731620-1731244 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 66, 197 |
| Conread position: | 16-385 |
| Cow position: | chr7:62439270-62438899 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 18-349 |
| Cow position: | chr7:51288097-51288429 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 145, 47 |
| Conread position: | 18-363 |
| Cow position: | chr7:15569022-15569384 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 62, 351 |
| Conread position: | 18-381 |
| Cow position: | chr7:55810523-55810891 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 102 |
| Conread position: | 18-389 |
| Cow position: | chr7:11907900-11908281 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 25-343 |
| Cow position: | chr7:29505684-29505370 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 89 |
| Conread position: | 36-421 |
| Cow position: | chr7:1548941-1548547 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 79-389 |
| Cow position: | chr7:33633382-33633069 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 79-389 |
| Cow position: | chr7:53034872-53034559 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 85-389 |
| Cow position: | chr7:37783317-37783011 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 90-334 |
| Cow position: | chr7:28880006-28880253 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 119-356 |
| Cow position: | chr7:34757957-34758196 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 70 |
| Conread position: | 121-313 |
| Cow position: | chr7:5114781-5114978 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 129 |
| Conread position: | 121-356 |
| Cow position: | chr7:31316242-31316480 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 39, 119 |
| Conread position: | 121-359 |
| Cow position: | chr7:41156332-41156575 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 166 |
| Conread position: | 126-356 |
| Cow position: | chr7:56093243-56093476 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 31, 90 |
| Conread position: | 127-391 |
| Cow position: | chr7:10346260-10345992 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 158 |
| Conread position: | 128-315 |
| Cow position: | chr7:41339875-41339683 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 136-391 |
| Cow position: | chr7:41984768-41985015 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 137-383 |
| Cow position: | chr7:49772039-49771791 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 144-325 |
| Cow position: | chr7:58656567-58656757 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 146-356 |
| Cow position: | chr7:15572252-15572461 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 159-445 |
| Cow position: | chr7:20170045-20170336 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 132 |
| Conread position: | 164-356 |
| Cow position: | chr7:54184162-54183972 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 180, 124 |
| Conread position: | 165-437 |
| Cow position: | chr7:23257322-23257042 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 48 |
| Conread position: | 166-342 |
| Cow position: | chr7:24224543-24224720 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 171-355 |
| Cow position: | chr7:8074681-8074865 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 124, 36 |
| Conread position: | 171-382 |
| Cow position: | chr7:4402472-4402264 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 172-389 |
| Cow position: | chr7:36733822-36734041 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 40, 64 |
| Conread position: | 192-389 |
| Cow position: | chr7:26722248-26722052 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 204-441 |
| Cow position: | chr7:26317676-26317911 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 201, 136 |
| Conread position: | 210-367 |
| Cow position: | chr7:36687561-36687406 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 213-465 |
| Cow position: | chr7:269826-270078 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 213 |
| Conread position: | 216-352 |
| Cow position: | chr7:12709052-12709188 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.