Cow genome map
| Conread name: | Ss1.1-rnmm34c_b15.5 |
| Conread position: | 4-389 |
| Cow position: | chrX:33003591-33003994 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 7-419 |
| Cow position: | chrX:25176157-25176571 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 7-445 |
| Cow position: | chrX:16775714-16776147 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 382, 71 |
| Conread position: | 8-281 |
| Cow position: | chrX:35820921-35820638 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 8-315 |
| Cow position: | chrX:17902150-17901841 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 88 |
| Conread position: | 8-355 |
| Cow position: | chrX:18769255-18769605 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 94 |
| Conread position: | 8-359 |
| Cow position: | chrX:1048241-1048611 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 118 |
| Conread position: | 8-382 |
| Cow position: | chrX:28820082-28820474 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 70, 331 |
| Conread position: | 8-383 |
| Cow position: | chrX:3628121-3628503 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 87, 140 |
| Conread position: | 8-386 |
| Cow position: | chrX:41114547-41114939 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 51 |
| Conread position: | 8-387 |
| Cow position: | chrX:23382837-23382435 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 8-389 |
| Cow position: | chrX:10457047-10457440 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 43, 95 |
| Conread position: | 8-389 |
| Cow position: | chrX:17663573-17663174 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 72, 122 |
| Conread position: | 8-448 |
| Cow position: | chrX:12852324-12851887 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 158, 39 |
| Conread position: | 8-448 |
| Cow position: | chrX:37943386-37942946 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 99, 45 |
| Conread position: | 8-454 |
| Cow position: | chrX:24951202-24950733 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 11-316 |
| Cow position: | chrX:25144439-25144744 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 104 |
| Conread position: | 11-356 |
| Cow position: | chrX:39410107-39409765 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 67 |
| Conread position: | 11-383 |
| Cow position: | chrX:19556364-19556742 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 75, 118 |
| Conread position: | 13-360 |
| Cow position: | chrX:20869880-20869531 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 13-360 |
| Cow position: | chrX:35832771-35833119 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 13-419 |
| Cow position: | chrX:24163104-24162697 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 14-445 |
| Cow position: | chrX:12750343-12750762 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 283 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 28-356 |
| Cow position: | chrX:30756542-30756879 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 193 |
| Conread position: | 54-479 |
| Cow position: | chrX:23832045-23831614 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 151 |
| Conread position: | 79-305 |
| Cow position: | chrX:7418685-7418913 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 80, 32 |
| Conread position: | 79-340 |
| Cow position: | chrX:14267773-14267510 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 79-380 |
| Cow position: | chrX:27342901-27343203 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 79-383 |
| Cow position: | chrX:5934608-5934915 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 79-423 |
| Cow position: | chrX:31982197-31981843 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 21 |
| Conread position: | 82-389 |
| Cow position: | chrX:31728897-31729196 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 237, 30 |
| Conread position: | 82-391 |
| Cow position: | chrX:39546546-39546233 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 83-389 |
| Cow position: | chrX:15574451-15574148 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 75, 27 |
| Conread position: | 83-448 |
| Cow position: | chrX:20687429-20687793 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 87-356 |
| Cow position: | chrX:965928-966199 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 89-391 |
| Cow position: | chrX:35229069-35228761 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 91-367 |
| Cow position: | chrX:38999346-38999619 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 188, 21 |
| Conread position: | 104-392 |
| Cow position: | chrX:14853707-14853418 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 8, 42 |
| Conread position: | 113-310 |
| Cow position: | chrX:44428136-44427934 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 120-356 |
| Cow position: | chrX:9156785-9157025 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 121-348 |
| Cow position: | chrX:18597679-18597453 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 114 |
| Conread position: | 121-356 |
| Cow position: | chrX:11509538-11509777 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 9 |
| Conread position: | 121-389 |
| Cow position: | chrX:17064715-17064445 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 47, 142 |
| Conread position: | 121-389 |
| Cow position: | chrX:18152786-18152516 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 121-389 |
| Cow position: | chrX:23325868-23325594 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 165 |
| Conread position: | 122-453 |
| Cow position: | chrX:37233044-37233387 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 123-389 |
| Cow position: | chrX:25039055-25039322 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 123-389 |
| Cow position: | chrX:34169098-34168838 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 124-448 |
| Cow position: | chrX:24529118-24529436 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 126-389 |
| Cow position: | chrX:13049964-13049704 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 163, 39 |
| Conread position: | 137-442 |
| Cow position: | chrX:38832426-38832125 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 139-355 |
| Cow position: | chrX:27116210-27116000 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 142-321 |
| Cow position: | chrX:19599523-19599706 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 144-388 |
| Cow position: | chrX:9235152-9235395 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 150-448 |
| Cow position: | chrX:15379874-15380185 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 229 |
| Conread position: | 162-325 |
| Cow position: | chrX:19170795-19170635 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 162-392 |
| Cow position: | chrX:15500440-15500207 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 164-389 |
| Cow position: | chrX:37960126-37960348 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 105, 21 |
| Conread position: | 167-422 |
| Cow position: | chrX:15308481-15308231 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 123, 113 |
| Conread position: | 171-356 |
| Cow position: | chrX:11588132-11587948 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 171-389 |
| Cow position: | chrX:1964236-1964461 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 171-389 |
| Cow position: | chrX:8943244-8943028 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 171-393 |
| Cow position: | chrX:7704756-7704970 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 48, 97 |
| Conread position: | 171-455 |
| Cow position: | chrX:10409561-10409271 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 198, 127 |
| Conread position: | 172-417 |
| Cow position: | chrX:40517113-40517360 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 173-453 |
| Cow position: | chrX:5545587-5545317 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 117, 44 |
| Conread position: | 180-360 |
| Cow position: | chrX:1430938-1431118 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-384 |
| Cow position: | chrX:19464827-19464626 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 180-424 |
| Cow position: | chrX:18840684-18840441 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 197-356 |
| Cow position: | chrX:20981359-20981518 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 223-360 |
| Cow position: | chrX:26618890-26618753 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 223-387 |
| Cow position: | chrX:15339953-15339789 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.