Cow genome map
| Conread name: | Ss1.1-rova002_o20.5 |
| Conread position: | 5-350 |
| Cow position: | chr14:25860438-25860783 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 5-377 |
| Cow position: | chr14:3101258-3100889 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 5-387 |
| Cow position: | chr14:3100843-3100461 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 5-388 |
| Cow position: | chr14:680889-681272 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 67, 48 |
| Conread position: | 5-388 |
| Cow position: | chr14:3080348-3079965 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 220, 240 |
| Conread position: | 5-388 |
| Cow position: | chr14:25910909-25911292 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 64, 53 |
| Conread position: | 5-389 |
| Cow position: | chr14:447667-448051 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 53, 68 |
| Conread position: | 5-389 |
| Cow position: | chr14:3080096-3079712 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 5-389 |
| Cow position: | chr14:3080264-3079880 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 68, 50 |
| Conread position: | 5-389 |
| Cow position: | chr14:3127944-3127560 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 5-389 |
| Cow position: | chr14:3156060-3156444 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 5-389 |
| Cow position: | chr14:25860270-25860654 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 5-389 |
| Cow position: | chr14:25895108-25895492 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 150, 137 |
| Conread position: | 5-394 |
| Cow position: | chr14:25877489-25877878 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 5-437 |
| Cow position: | chr14:25895864-25896297 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 138, 128 |
| Conread position: | 5-442 |
| Cow position: | chr14:25794600-25794162 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 5-447 |
| Cow position: | chr14:25877405-25877847 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 5-516 |
| Cow position: | chr14:25836713-25837226 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 5-525 |
| Cow position: | chr14:680637-681159 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 325 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 5-525 |
| Cow position: | chr14:3080432-3079910 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 307 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 5-525 |
| Cow position: | chr14:25877153-25877675 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 326 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 5-530 |
| Cow position: | chr14:25910745-25911268 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 5-531 |
| Cow position: | chr14:3080936-3080408 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 5-531 |
| Cow position: | chr14:25859598-25860126 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 328 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 55, 83 |
| Conread position: | 5-532 |
| Cow position: | chr14:25836377-25836906 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 64 |
| Conread position: | 5-532 |
| Cow position: | chr14:25859178-25859707 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 326 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 5-532 |
| Cow position: | chr14:25860018-25860547 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 340 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 58, 84 |
| Conread position: | 5-532 |
| Cow position: | chr14:25877069-25877598 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 343 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 53, 81 |
| Conread position: | 5-532 |
| Cow position: | chr14:25895612-25896141 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 5-534 |
| Cow position: | chr14:3128112-3127581 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 332 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 62, 75 |
| Conread position: | 5-534 |
| Cow position: | chr14:25876649-25877180 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 5-535 |
| Cow position: | chr14:25876565-25877097 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 345 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 5-549 |
| Cow position: | chr14:25795272-25794724 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 347 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 5-549 |
| Cow position: | chr14:25795356-25794808 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 351 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 5-549 |
| Cow position: | chr14:25795440-25794892 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 346 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 5-582 |
| Cow position: | chr14:25836209-25836791 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 363 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 6-532 |
| Cow position: | chr14:25859261-25859791 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 318 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 149 |
| Conread position: | 7-389 |
| Cow position: | chr14:25895446-25895828 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 7-478 |
| Cow position: | chr14:25784264-25784737 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 131, 118 |
| Conread position: | 7-532 |
| Cow position: | chr14:25877239-25877766 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 7-534 |
| Cow position: | chr14:25783592-25784121 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 7-534 |
| Cow position: | chr14:25784096-25784625 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 7-534 |
| Cow position: | chr14:25794850-25794320 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 331 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 56, 64 |
| Conread position: | 7-549 |
| Cow position: | chr14:25783508-25784054 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 7-549 |
| Cow position: | chr14:25783928-25784474 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 153 |
| Conread position: | 8-389 |
| Cow position: | chr14:3155406-3155787 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 8-532 |
| Cow position: | chr14:3101422-3100900 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 334 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 69, 48 |
| Conread position: | 8-549 |
| Cow position: | chr14:25794933-25794388 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 12-532 |
| Cow position: | chr14:25836048-25836570 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 61, 65 |
| Conread position: | 13-437 |
| Cow position: | chr14:25895200-25895624 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 13-532 |
| Cow position: | chr14:25860110-25860631 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 13-549 |
| Cow position: | chr14:25783766-25784306 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 13-588 |
| Cow position: | chr14:25859354-25859933 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 362 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 14-532 |
| Cow position: | chr14:25876490-25877010 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 328 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 15-537 |
| Cow position: | chr14:25795094-25794570 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 337 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 63, 57 |
| Conread position: | 16-534 |
| Cow position: | chr14:25783433-25783953 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 61-549 |
| Cow position: | chr14:25783311-25783802 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 76-526 |
| Cow position: | chr14:447570-448022 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 277 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 77, 66 |
| Conread position: | 82-549 |
| Cow position: | chr14:25795447-25794976 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 48, 78 |
| Conread position: | 87-551 |
| Cow position: | chr14:25910743-25911208 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 136, 51 |
| Conread position: | 95-387 |
| Cow position: | chr14:447925-448217 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 97-531 |
| Cow position: | chr14:3155900-3156336 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 49, 76 |
Show alignments to all cow chromosomes.