Cow genome map
| Conread name: | Ss1.1-rova002_o20.5 |
| Conread position: | 1-526 |
| Cow position: | chr17:22590114-22589585 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 347 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 19, 78 |
| Conread position: | 5-304 |
| Cow position: | chr17:22589520-22589221 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 5-376 |
| Cow position: | chr17:22473580-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 5-383 |
| Cow position: | chr17:22452051-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 240, 234 |
| Conread position: | 5-520 |
| Cow position: | chr17:22589772-22589255 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 321 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 5-531 |
| Cow position: | chr17:22552354-22551826 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 5-537 |
| Cow position: | chr17:22452219-22451685 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 60 |
| Conread position: | 5-538 |
| Cow position: | chr17:22473412-22473948 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 7-526 |
| Cow position: | chr17:22552520-22551999 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 340 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 7-532 |
| Cow position: | chr17:22452385-22451858 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 335 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 7-534 |
| Cow position: | chr17:22473249-22473775 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 7-585 |
| Cow position: | chr17:22499147-22498564 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 377 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 8-389 |
| Cow position: | chr17:22499398-22499017 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 152 |
| Conread position: | 12-533 |
| Cow position: | chr17:22553103-22552580 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 336 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 13-222 |
| Cow position: | chr17:22589428-22589219 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 13-365 |
| Cow position: | chr17:22551842-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 13-387 |
| Cow position: | chr17:22551926-22551552 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 13-465 |
| Cow position: | chr17:22590184-22589730 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 13-534 |
| Cow position: | chr17:22552262-22551739 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 336 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 13-553 |
| Cow position: | chr17:22553018-22552473 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 346 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 133, 160 |
| Conread position: | 15-549 |
| Cow position: | chr17:22589930-22589392 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 335 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 127, 118 |
| Conread position: | 19-369 |
| Cow position: | chr17:22498883-22498533 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 76-473 |
| Cow position: | chr17:22590289-22589890 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 78-519 |
| Cow position: | chr17:22452397-22451955 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 166-552 |
| Cow position: | chr17:22452393-22452003 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 6 |
| Conread position: | 176-520 |
| Cow position: | chr17:22499398-22499052 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 71, 76 |
Show alignments to all cow chromosomes.