Cow genome map
| Conread name: | Ss1.1-rova002_o20.5 |
| Conread position: | 1-308 |
| Cow position: | chr19:23650132-23650440 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 67 |
| Conread position: | 1-519 |
| Cow position: | chr19:20678194-20678714 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 74 |
| Conread position: | 1-534 |
| Cow position: | chr19:23597103-23597639 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 247 |
| Conread position: | 1-534 |
| Cow position: | chr19:23614094-23614630 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 344 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 5, 76 |
| Conread position: | 4-534 |
| Cow position: | chr19:23649296-23649828 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 222, 253 |
| Conread position: | 5-200 |
| Cow position: | chr19:20635218-20635023 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 5-369 |
| Cow position: | chr19:14960062-14959703 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 5-386 |
| Cow position: | chr19:14959574-14959202 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 5-389 |
| Cow position: | chr19:23614435-23614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 50 |
| Conread position: | 5-448 |
| Cow position: | chr19:20635470-20635027 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 5-465 |
| Cow position: | chr19:20635554-20635092 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 5-465 |
| Cow position: | chr19:23649633-23650095 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 308 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 5-520 |
| Cow position: | chr19:14959812-14959309 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 216, 100 |
| Conread position: | 5-524 |
| Cow position: | chr19:23597192-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 5-531 |
| Cow position: | chr19:14940235-14940763 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 5-531 |
| Cow position: | chr19:23649885-23650413 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 336 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 5-534 |
| Cow position: | chr19:20677442-20677973 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 344 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 5-534 |
| Cow position: | chr19:23613427-23613958 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 53 |
| Conread position: | 5-534 |
| Cow position: | chr19:23613763-23614294 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 5-534 |
| Cow position: | chr19:23649801-23650332 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 5-545 |
| Cow position: | chr19:43570229-43569688 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 5-552 |
| Cow position: | chr19:20677694-20678246 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 150 |
| Conread position: | 5-582 |
| Cow position: | chr19:20678030-20678612 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 238 |
| Conread position: | 6-436 |
| Cow position: | chr19:14948470-14948040 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 294 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 57, 73 |
| Conread position: | 6-531 |
| Cow position: | chr19:20677527-20678054 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 154 |
| Conread position: | 7-365 |
| Cow position: | chr19:20635384-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 56, 65 |
| Conread position: | 7-388 |
| Cow position: | chr19:23650055-23650436 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 7-389 |
| Cow position: | chr19:14940657-14941039 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 56, 64 |
| Conread position: | 7-390 |
| Cow position: | chr19:23613933-23614316 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 7-463 |
| Cow position: | chr19:23614689-23615143 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 7-533 |
| Cow position: | chr19:20635636-20635108 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 154 |
| Conread position: | 7-535 |
| Cow position: | chr19:20677360-20677890 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 248 |
| Conread position: | 7-538 |
| Cow position: | chr19:14940489-14941022 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 347 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 7-549 |
| Cow position: | chr19:20635720-20635174 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 153 |
| Conread position: | 7-551 |
| Cow position: | chr19:20677864-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 69 |
| Conread position: | 7-585 |
| Cow position: | chr19:23614269-23614852 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 8-386 |
| Cow position: | chr19:14940154-14940532 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 10-435 |
| Cow position: | chr19:14959242-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 278 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 12-534 |
| Cow position: | chr19:14939988-14940514 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 13-353 |
| Cow position: | chr19:14959155-14958821 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 133, 36 |
| Conread position: | 13-451 |
| Cow position: | chr19:14960138-14959699 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 41, 54 |
| Conread position: | 13-526 |
| Cow position: | chr19:43570379-43569874 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 13-534 |
| Cow position: | chr19:14940075-14940598 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 13-534 |
| Cow position: | chr19:20678122-20678645 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 209 |
| Conread position: | 13-534 |
| Cow position: | chr19:23613351-23613874 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 345 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 13-549 |
| Cow position: | chr19:23649389-23649929 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 343 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 62, 57 |
| Conread position: | 14-531 |
| Cow position: | chr19:23596868-23597384 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 23-534 |
| Cow position: | chr19:20677295-20677805 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 30-517 |
| Cow position: | chr19:14959306-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 63-537 |
| Cow position: | chr19:20635747-20635272 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 75-389 |
| Cow position: | chr19:23649283-23649597 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 93 |
| Conread position: | 75-532 |
| Cow position: | chr19:14960410-14959953 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 292 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 62, 78 |
| Conread position: | 82-526 |
| Cow position: | chr19:43570236-43569790 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 279 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 144, 160 |
| Conread position: | 84-355 |
| Cow position: | chr19:14959579-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 158-389 |
| Cow position: | chr19:23649282-23649513 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 99 |
| Conread position: | 180-577 |
| Cow position: | chr19:23613350-23613752 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 26 |
Show alignments to all cow chromosomes.