Cow genome map
| Conread name: | Ss1.1-rova002_o20.5 |
| Conread position: | 1-532 |
| Cow position: | chr22:12385512-12384976 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 70 |
| Conread position: | 1-537 |
| Cow position: | chr22:14429802-14430341 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 69 |
| Conread position: | 3-441 |
| Cow position: | chr22:12385339-12384900 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 5-281 |
| Cow position: | chr22:12418782-12418506 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 5-297 |
| Cow position: | chr22:12399095-12398803 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 5-300 |
| Cow position: | chr22:12458111-12457816 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 142, 161 |
| Conread position: | 5-303 |
| Cow position: | chr22:11701346-11701644 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 240, 221 |
| Conread position: | 5-358 |
| Cow position: | chr22:12475640-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 5-358 |
| Cow position: | chr22:12499619-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 5-358 |
| Cow position: | chr22:14442373-14442723 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 309, 219 |
| Conread position: | 5-386 |
| Cow position: | chr22:14430647-14431021 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 5-386 |
| Cow position: | chr22:14442289-14442667 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 143, 128 |
| Conread position: | 5-387 |
| Cow position: | chr22:12430991-12430609 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 5-389 |
| Cow position: | chr22:11640683-11641067 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 5-389 |
| Cow position: | chr22:12458279-12457895 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 5-391 |
| Cow position: | chr22:11641019-11641405 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 5-437 |
| Cow position: | chr22:12432251-12431819 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 277 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 5-448 |
| Cow position: | chr22:14442037-14442480 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 225, 236 |
| Conread position: | 5-466 |
| Cow position: | chr22:14468218-14468682 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 219 |
| Conread position: | 5-472 |
| Cow position: | chr22:12499451-12499920 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 72 |
| Conread position: | 5-519 |
| Cow position: | chr22:12475808-12475292 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 72 |
| Conread position: | 5-520 |
| Cow position: | chr22:14468136-14468653 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 239 |
| Conread position: | 5-520 |
| Cow position: | chr22:46654174-46654691 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 330 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 395, 402 |
| Conread position: | 5-523 |
| Cow position: | chr22:46654342-46654863 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 230, 236 |
| Conread position: | 5-526 |
| Cow position: | chr22:14430479-14430995 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 231 |
| Conread position: | 5-531 |
| Cow position: | chr22:14429891-14430419 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 237 |
| Conread position: | 5-533 |
| Cow position: | chr22:12399431-12398901 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 5-533 |
| Cow position: | chr22:12475892-12475362 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 5-533 |
| Cow position: | chr22:12499367-12499897 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 5-534 |
| Cow position: | chr22:12458531-12458000 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 328 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 5-535 |
| Cow position: | chr22:12431327-12430795 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 5-537 |
| Cow position: | chr22:46654006-46654540 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 331 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 5-538 |
| Cow position: | chr22:12432419-12431884 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 5-551 |
| Cow position: | chr22:14429975-14430526 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 237 |
| Conread position: | 5-555 |
| Cow position: | chr22:12431663-12431108 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 142 |
| Conread position: | 5-580 |
| Cow position: | chr22:14468052-14468634 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 155 |
| Conread position: | 5-585 |
| Cow position: | chr22:14430143-14430728 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 238 |
| Conread position: | 6-535 |
| Cow position: | chr22:12432084-12431551 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 7-320 |
| Cow position: | chr22:12430905-12430591 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 7-387 |
| Cow position: | chr22:12418948-12418568 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 7-437 |
| Cow position: | chr22:12475722-12475292 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 7-532 |
| Cow position: | chr22:12399345-12398818 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 7-534 |
| Cow position: | chr22:12399765-12399236 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 7-534 |
| Cow position: | chr22:12476226-12475697 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 333 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 7-534 |
| Cow position: | chr22:12499033-12499562 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 338 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 7-549 |
| Cow position: | chr22:12499201-12499747 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 347 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 11-417 |
| Cow position: | chr22:12399175-12398764 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 62 |
| Conread position: | 11-533 |
| Cow position: | chr22:12385669-12385143 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 343 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 12-555 |
| Cow position: | chr22:12476053-12475505 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 12-579 |
| Cow position: | chr22:14429478-14430052 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 361 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 12-585 |
| Cow position: | chr22:14429728-14430308 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 54 |
| Conread position: | 13-448 |
| Cow position: | chr22:12431907-12431472 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 133, 148 |
| Conread position: | 13-533 |
| Cow position: | chr22:12431403-12430881 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 13-534 |
| Cow position: | chr22:12431739-12431216 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 64 |
| Conread position: | 13-535 |
| Cow position: | chr22:11640859-11641383 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 13-584 |
| Cow position: | chr22:14430319-14430895 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 383 |
| Conread position: | 14-524 |
| Cow position: | chr22:14441962-14442474 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 14-549 |
| Cow position: | chr22:12498872-12499411 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 341 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 14-576 |
| Cow position: | chr22:14467977-14468544 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 15-520 |
| Cow position: | chr22:14442215-14442719 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 434, 376 |
| Conread position: | 16-532 |
| Cow position: | chr22:12419023-12418505 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 18-303 |
| Cow position: | chr22:11666621-11666906 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 18-388 |
| Cow position: | chr22:11701275-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 18-534 |
| Cow position: | chr22:12399838-12399320 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 21-534 |
| Cow position: | chr22:11701110-11701625 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 315 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 224, 217 |
| Conread position: | 25-538 |
| Cow position: | chr22:14441889-14442404 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 307 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 120, 130 |
| Conread position: | 65-389 |
| Cow position: | chr22:12458638-12458315 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 67-538 |
| Cow position: | chr22:14467946-14468419 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 300 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 76-534 |
| Cow position: | chr22:12458376-12457916 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 87-520 |
| Cow position: | chr22:46654004-46654439 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 118-534 |
| Cow position: | chr22:11640628-11641046 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 150-539 |
| Cow position: | chr22:12432441-12432052 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 10 |
| Conread position: | 164-534 |
| Cow position: | chr22:11666431-11666803 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 165-388 |
| Cow position: | chr22:12476320-12476097 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 80 |
Show alignments to all cow chromosomes.