Cow genome map


           Conread name:
           Ss1.1-rova002_o20.5
        

               Conread position:
               1-532
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 70
               

               Conread position:
               1-537
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 69
               

               Conread position:
               3-441
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 77
               

               Conread position:
               5-281
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               61, 72
               

               Conread position:
               5-297
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               72, 65
               

               Conread position:
               5-300
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               142, 161
               

               Conread position:
               5-303
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               240, 221
               

               Conread position:
               5-358
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               58, 72
               

               Conread position:
               5-358
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               72, 65
               

               Conread position:
               5-358
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               309, 219
               

               Conread position:
               5-386
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               250
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               52, 62
               

               Conread position:
               5-386
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               143, 128
               

               Conread position:
               5-387
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               44, 64
               

               Conread position:
               5-389
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               259
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               58, 75
               

               Conread position:
               5-389
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               54, 64
               

               Conread position:
               5-391
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               259
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               69, 52
               

               Conread position:
               5-437
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               277
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               58, 71
               

               Conread position:
               5-448
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               275
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               225, 236
               

               Conread position:
               5-466
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 219
               

               Conread position:
               5-472
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 72
               

               Conread position:
               5-519
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 72
               

               Conread position:
               5-520
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 239
               

               Conread position:
               5-520
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               330
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               395, 402
               

               Conread position:
               5-523
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               317
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               230, 236
               

               Conread position:
               5-526
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 231
               

               Conread position:
               5-531
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 237
               

               Conread position:
               5-533
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 65
               

               Conread position:
               5-533
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 58
               

               Conread position:
               5-533
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 58
               

               Conread position:
               5-534
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               328
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               51, 62
               

               Conread position:
               5-535
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 71
               

               Conread position:
               5-537
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               331
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               61, 71
               

               Conread position:
               5-538
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 72
               

               Conread position:
               5-551
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 237
               

               Conread position:
               5-555
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 142
               

               Conread position:
               5-580
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 155
               

               Conread position:
               5-585
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 238
               

               Conread position:
               6-535
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               323
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               13, 66
               

               Conread position:
               7-320
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               59, 69
               

               Conread position:
               7-387
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               51, 61
               

               Conread position:
               7-437
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 56
               

               Conread position:
               7-532
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 69
               

               Conread position:
               7-534
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 66
               

               Conread position:
               7-534
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               333
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               70, 58
               

               Conread position:
               7-534
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               338
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               70, 58
               

               Conread position:
               7-549
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               347
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               50, 60
               

               Conread position:
               11-417
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 62
               

               Conread position:
               11-533
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               343
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               49, 66
               

               Conread position:
               12-555
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 65
               

               Conread position:
               12-579
               

               Cow position:
               
               

               Alignm length:
               587
               

               Alignm identity:
               361
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               22, 71
               

               Conread position:
               12-585
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 54
               

               Conread position:
               13-448
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               276
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               133, 148
               

               Conread position:
               13-533
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 63
               

               Conread position:
               13-534
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               326
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               53, 64
               

               Conread position:
               13-535
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               13-584
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               400, 383
               

               Conread position:
               14-524
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               318
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               52, 63
               

               Conread position:
               14-549
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               341
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               43, 53
               

               Conread position:
               14-576
               

               Cow position:
               
               

               Alignm length:
               574
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 63
               

               Conread position:
               15-520
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               434, 376
               

               Conread position:
               16-532
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               330
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               38, 51
               

               Conread position:
               18-303
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               59, 52
               

               Conread position:
               18-388
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               59, 53
               

               Conread position:
               18-534
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               328
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               45, 58
               

               Conread position:
               21-534
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               315
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               224, 217
               

               Conread position:
               25-538
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               307
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               120, 130
               

               Conread position:
               65-389
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               68, 12
               

               Conread position:
               67-538
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               300
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               78, 88
               

               Conread position:
               76-534
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               57, 91
               

               Conread position:
               87-520
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               45, 68
               

               Conread position:
               118-534
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               271
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               28, 48
               

               Conread position:
               150-539
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               86, 10
               

               Conread position:
               164-534
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               59, 80
               

               Conread position:
               165-388
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               69, 80
               
Show alignments to all cow chromosomes.