Cow genome map
| Conread name: | Ss1.1-rova002_o20.5 |
| Conread position: | 1-288 |
| Cow position: | chr23:24626464-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 3-389 |
| Cow position: | chr23:24626299-24626685 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 5-222 |
| Cow position: | chr23:24654110-24654327 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 5-224 |
| Cow position: | chr23:24535716-24535497 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 5-294 |
| Cow position: | chr23:25626692-25626981 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 55, 67 |
| Conread position: | 5-300 |
| Cow position: | chr23:25724050-25723755 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 5-331 |
| Cow position: | chr23:24522491-24522165 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 5-350 |
| Cow position: | chr23:24560477-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 5-377 |
| Cow position: | chr23:25626608-25626980 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 5-396 |
| Cow position: | chr23:25660312-25660703 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 5-437 |
| Cow position: | chr23:24535968-24535536 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 220, 231 |
| Conread position: | 5-470 |
| Cow position: | chr23:24547085-24546620 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 5-472 |
| Cow position: | chr23:24522656-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 141, 51 |
| Conread position: | 5-472 |
| Cow position: | chr23:25660228-25660697 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 310 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 53, 70 |
| Conread position: | 5-524 |
| Cow position: | chr23:24639545-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 5-531 |
| Cow position: | chr23:24639461-24639989 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 340 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 5-532 |
| Cow position: | chr23:24547253-24546724 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 5-532 |
| Cow position: | chr23:25626191-25626717 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 326 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 62, 67 |
| Conread position: | 5-538 |
| Cow position: | chr23:24560813-24560278 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 243 |
| Conread position: | 6-534 |
| Cow position: | chr23:24560896-24560366 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 7-381 |
| Cow position: | chr23:24639715-24640089 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 7-471 |
| Cow position: | chr23:25626445-25626908 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 72, 90 |
| Conread position: | 7-520 |
| Cow position: | chr23:24560643-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 7-532 |
| Cow position: | chr23:25626109-25626633 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 333 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 11-534 |
| Cow position: | chr23:25626027-25626554 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 334 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 13-391 |
| Cow position: | chr23:25698571-25698193 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 13-426 |
| Cow position: | chr23:25626535-25626945 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 16-388 |
| Cow position: | chr23:24535873-24535501 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 16-532 |
| Cow position: | chr23:24639388-24639906 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 341 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 26, 61 |
| Conread position: | 18-300 |
| Cow position: | chr23:24521972-24521690 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 21-302 |
| Cow position: | chr23:24654042-24654322 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 28-532 |
| Cow position: | chr23:24536029-24535523 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 70-532 |
| Cow position: | chr23:25660208-25660673 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 302 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 7, 91 |
| Conread position: | 75-532 |
| Cow position: | chr23:24547267-24546808 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 147, 170 |
| Conread position: | 75-534 |
| Cow position: | chr23:24639279-24639740 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 85 |
| Conread position: | 76-389 |
| Cow position: | chr23:25724063-25723750 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 151, 158 |
| Conread position: | 83-532 |
| Cow position: | chr23:24560903-24560452 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 91-538 |
| Cow position: | chr23:24626303-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 75 |
| Conread position: | 112-389 |
| Cow position: | chr23:25724111-25723834 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 174-534 |
| Cow position: | chr23:24536051-24535689 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 65 |
| Conread position: | 189-389 |
| Cow position: | chr23:24654042-24654242 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 264-534 |
| Cow position: | chr23:24547330-24547058 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 31 |
Show alignments to all cow chromosomes.