Cow genome map
| Conread name: | Ss1.1-rova002_o20.5 |
| Conread position: | 1-364 |
| Cow position: | chr25:33305332-33304971 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 1-552 |
| Cow position: | chr25:34770053-34769496 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 71 |
| Conread position: | 5-322 |
| Cow position: | chr25:18642179-18641859 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 5-358 |
| Cow position: | chr25:33127878-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 5-366 |
| Cow position: | chr25:36801619-36801976 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 127, 140 |
| Conread position: | 5-386 |
| Cow position: | chr25:34447350-34447729 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 5-387 |
| Cow position: | chr25:33298975-33299357 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 131, 125 |
| Conread position: | 5-388 |
| Cow position: | chr25:33127794-33128177 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 5-388 |
| Cow position: | chr25:34447266-34447649 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 5-389 |
| Cow position: | chr25:22235905-22236289 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 126, 130 |
| Conread position: | 5-389 |
| Cow position: | chr25:23420459-23420843 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 5-389 |
| Cow position: | chr25:34447182-34447566 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 5-392 |
| Cow position: | chr25:34447518-34447894 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 5-448 |
| Cow position: | chr25:34769628-34769186 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 5-517 |
| Cow position: | chr25:33144925-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 5-533 |
| Cow position: | chr25:33157397-33156867 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 66 |
| Conread position: | 5-533 |
| Cow position: | chr25:33299227-33299757 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 71 |
| Conread position: | 5-534 |
| Cow position: | chr25:33157313-33156783 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 5-534 |
| Cow position: | chr25:33298723-33299254 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 339 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 5-549 |
| Cow position: | chr25:34769964-34769416 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 6-387 |
| Cow position: | chr25:36801452-36801833 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 6-413 |
| Cow position: | chr25:36800958-36801367 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 6-462 |
| Cow position: | chr25:33298806-33299266 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 6-471 |
| Cow position: | chr25:23420376-23420843 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 52 |
| Conread position: | 7-309 |
| Cow position: | chr25:23420545-23420847 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 7-449 |
| Cow position: | chr25:34769710-34769268 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 7-533 |
| Cow position: | chr25:34770132-34769602 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 161 |
| Conread position: | 7-534 |
| Cow position: | chr25:34769878-34769349 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 7-538 |
| Cow position: | chr25:34447100-34447633 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 342 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 55, 63 |
| Conread position: | 10-377 |
| Cow position: | chr25:36800796-36801163 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 10-377 |
| Cow position: | chr25:36801540-36801907 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 126, 120 |
| Conread position: | 10-466 |
| Cow position: | chr25:33298476-33298934 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 301 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 11-399 |
| Cow position: | chr25:22235827-22236215 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 120, 150 |
| Conread position: | 12-533 |
| Cow position: | chr25:33157474-33156951 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 337 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 13-387 |
| Cow position: | chr25:33299487-33299856 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 118, 140 |
| Conread position: | 13-387 |
| Cow position: | chr25:36801375-36801749 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 150, 160 |
| Conread position: | 13-549 |
| Cow position: | chr25:33299151-33299691 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 342 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 121, 112 |
| Conread position: | 15-387 |
| Cow position: | chr25:33305878-33305512 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 130, 41 |
| Conread position: | 15-387 |
| Cow position: | chr25:36800633-36801005 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 15-534 |
| Cow position: | chr25:33298565-33299086 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 329 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 41, 54 |
| Conread position: | 27-388 |
| Cow position: | chr25:33127732-33128093 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 66-389 |
| Cow position: | chr25:18642201-18641876 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 85, 9 |
| Conread position: | 75-355 |
| Cow position: | chr25:326985-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 76-534 |
| Cow position: | chr25:34447001-34447461 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 91 |
| Conread position: | 84-534 |
| Cow position: | chr25:36801362-36801814 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 171, 152 |
| Conread position: | 88-469 |
| Cow position: | chr25:33298470-33298853 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 94-534 |
| Cow position: | chr25:33157476-33157034 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 95-533 |
| Cow position: | chr25:23420228-23420653 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 136, 37 |
| Conread position: | 98-377 |
| Cow position: | chr25:326924-327203 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 147-533 |
| Cow position: | chr25:33127685-33128072 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 78, 27 |
Show alignments to all cow chromosomes.