Cow genome map
| Conread name: | Ss1.1-rova002_o20.5 |
| Conread position: | 1-473 |
| Cow position: | chr7:8243625-8244097 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 55 |
| Conread position: | 1-520 |
| Cow position: | chr7:8277919-8278441 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 322 |
| Conread position: | 2-471 |
| Cow position: | chr7:8277333-8277804 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 0 |
| Conread position: | 2-584 |
| Cow position: | chr7:8242956-8243542 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 137 |
| Conread position: | 3-534 |
| Cow position: | chr7:1439627-1440161 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 332 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 5-218 |
| Cow position: | chr7:1440050-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 5-221 |
| Cow position: | chr7:8244198-8244416 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 5-277 |
| Cow position: | chr7:11434495-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 95 |
| Conread position: | 5-308 |
| Cow position: | chr7:18390490-18390793 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 242, 248 |
| Conread position: | 5-364 |
| Cow position: | chr7:8278092-8278451 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 239 |
| Conread position: | 5-387 |
| Cow position: | chr7:18390406-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 5-389 |
| Cow position: | chr7:18390238-18390622 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 5-426 |
| Cow position: | chr7:11434656-11434242 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 5-463 |
| Cow position: | chr7:11600943-11600483 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 296 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 5-514 |
| Cow position: | chr7:8325649-8326163 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 5-517 |
| Cow position: | chr7:11434740-11434231 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 5-520 |
| Cow position: | chr7:3180361-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 5-532 |
| Cow position: | chr7:42879284-42878755 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 5-533 |
| Cow position: | chr7:1014763-1015293 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 333 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 62, 67 |
| Conread position: | 5-534 |
| Cow position: | chr7:8243211-8243741 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 155 |
| Conread position: | 5-534 |
| Cow position: | chr7:8325397-8325928 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 72 |
| Conread position: | 5-535 |
| Cow position: | chr7:3180277-3180806 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 5-537 |
| Cow position: | chr7:8325565-8326099 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 5-538 |
| Cow position: | chr7:11434894-11434380 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 344 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 127, 49 |
| Conread position: | 5-557 |
| Cow position: | chr7:8277588-8278145 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 238 |
| Conread position: | 5-557 |
| Cow position: | chr7:8277840-8278397 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 5-572 |
| Cow position: | chr7:8243546-8244116 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 128 |
| Conread position: | 5-587 |
| Cow position: | chr7:8242875-8243461 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 5-587 |
| Cow position: | chr7:8324893-8325480 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 168 |
| Conread position: | 5-587 |
| Cow position: | chr7:8325313-8325900 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 250 |
| Conread position: | 7-227 |
| Cow position: | chr7:11600689-11600470 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 54, 49 |
| Conread position: | 7-308 |
| Cow position: | chr7:42878610-42878309 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 69, 54 |
| Conread position: | 7-386 |
| Cow position: | chr7:1439885-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 56, 68 |
| Conread position: | 7-388 |
| Cow position: | chr7:42878694-42878313 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 7-465 |
| Cow position: | chr7:18390324-18390784 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 7-533 |
| Cow position: | chr7:1014933-1015460 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 337 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 7-533 |
| Cow position: | chr7:18390156-18390684 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 7-533 |
| Cow position: | chr7:42879030-42878502 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 336 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 7-534 |
| Cow position: | chr7:3179859-3180388 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 57 |
| Conread position: | 7-534 |
| Cow position: | chr7:3180027-3180556 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 7-535 |
| Cow position: | chr7:1014519-1015043 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 316 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 215, 127 |
| Conread position: | 7-561 |
| Cow position: | chr7:1014351-1014905 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 353 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 7-567 |
| Cow position: | chr7:8278178-8278734 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 275 |
| Conread position: | 7-576 |
| Cow position: | chr7:8277758-8278332 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 68 |
| Conread position: | 7-579 |
| Cow position: | chr7:8325147-8325726 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 7-587 |
| Cow position: | chr7:11601109-11600524 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 7-588 |
| Cow position: | chr7:8278010-8278594 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 533, 0 |
| Conread position: | 9-587 |
| Cow position: | chr7:11434974-11434412 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 124 |
| Conread position: | 12-388 |
| Cow position: | chr7:11600852-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 12-567 |
| Cow position: | chr7:8243383-8243946 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 13-300 |
| Cow position: | chr7:1014273-1014560 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 13-306 |
| Cow position: | chr7:11600767-11600474 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 13-576 |
| Cow position: | chr7:8277260-8277828 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 13-587 |
| Cow position: | chr7:8324817-8325396 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 14-532 |
| Cow position: | chr7:1014688-1015208 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 43 |
| Conread position: | 14-587 |
| Cow position: | chr7:18389995-18390573 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 364 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 15-473 |
| Cow position: | chr7:8324735-8325195 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 425, 0 |
| Conread position: | 15-537 |
| Cow position: | chr7:11601185-11600661 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 18-584 |
| Cow position: | chr7:8242804-8243375 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 22-534 |
| Cow position: | chr7:8277521-8278035 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 150 |
| Conread position: | 75-534 |
| Cow position: | chr7:3179759-3180220 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 157 |
| Conread position: | 75-537 |
| Cow position: | chr7:18390140-18390604 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 170, 164 |
| Conread position: | 91-386 |
| Cow position: | chr7:1014267-1014562 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 69 |
| Conread position: | 93-579 |
| Cow position: | chr7:8324729-8325222 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 149 |
| Conread position: | 93-587 |
| Cow position: | chr7:8277256-8277755 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 140 |
| Conread position: | 175-550 |
| Cow position: | chr7:1014267-1014646 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 245-537 |
| Cow position: | chr7:11601209-11600913 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 16, 95 |
Show alignments to all cow chromosomes.