Cow genome map

Conread name: Ss1.1-rova002_o20.5

Conread position: 1-473
Cow position:
Alignm length: 478
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 55

Conread position: 1-520
Cow position:
Alignm length: 525
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 322

Conread position: 2-471
Cow position:
Alignm length: 472
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 447, 0

Conread position: 2-584
Cow position:
Alignm length: 594
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 137

Conread position: 3-534
Cow position:
Alignm length: 544
Alignm identity: 332
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 57, 9

Conread position: 5-218
Cow position:
Alignm length: 217
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 47

Conread position: 5-221
Cow position:
Alignm length: 219
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 194, 0

Conread position: 5-277
Cow position:
Alignm length: 274
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 95

Conread position: 5-308
Cow position:
Alignm length: 305
Alignm identity: 195
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 242, 248

Conread position: 5-364
Cow position:
Alignm length: 363
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 239

Conread position: 5-387
Cow position:
Alignm length: 386
Alignm identity: 248
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 61, 72

Conread position: 5-389
Cow position:
Alignm length: 389
Alignm identity: 255
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 72, 65

Conread position: 5-426
Cow position:
Alignm length: 422
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 5-463
Cow position:
Alignm length: 467
Alignm identity: 296
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 61, 51

Conread position: 5-514
Cow position:
Alignm length: 518
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 47

Conread position: 5-517
Cow position:
Alignm length: 519
Alignm identity: 325
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 60

Conread position: 5-520
Cow position:
Alignm length: 523
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 71

Conread position: 5-532
Cow position:
Alignm length: 533
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 5-533
Cow position:
Alignm length: 536
Alignm identity: 333
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 62, 67

Conread position: 5-534
Cow position:
Alignm length: 537
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 155

Conread position: 5-534
Cow position:
Alignm length: 536
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 72

Conread position: 5-535
Cow position:
Alignm length: 539
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 71

Conread position: 5-537
Cow position:
Alignm length: 540
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 52

Conread position: 5-538
Cow position:
Alignm length: 539
Alignm identity: 344
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 127, 49

Conread position: 5-557
Cow position:
Alignm length: 562
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 238

Conread position: 5-557
Cow position:
Alignm length: 561
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 52

Conread position: 5-572
Cow position:
Alignm length: 575
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 128

Conread position: 5-587
Cow position:
Alignm length: 595
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 43

Conread position: 5-587
Cow position:
Alignm length: 592
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 168

Conread position: 5-587
Cow position:
Alignm length: 589
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 250

Conread position: 7-227
Cow position:
Alignm length: 223
Alignm identity: 164
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 54, 49

Conread position: 7-308
Cow position:
Alignm length: 305
Alignm identity: 199
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 69, 54

Conread position: 7-386
Cow position:
Alignm length: 383
Alignm identity: 253
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 56, 68

Conread position: 7-388
Cow position:
Alignm length: 388
Alignm identity: 255
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 64, 46

Conread position: 7-465
Cow position:
Alignm length: 464
Alignm identity: 287
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 69

Conread position: 7-533
Cow position:
Alignm length: 536
Alignm identity: 337
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 70, 63

Conread position: 7-533
Cow position:
Alignm length: 533
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 63

Conread position: 7-533
Cow position:
Alignm length: 536
Alignm identity: 336
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 69, 63

Conread position: 7-534
Cow position:
Alignm length: 535
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 57

Conread position: 7-534
Cow position:
Alignm length: 540
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 64

Conread position: 7-535
Cow position:
Alignm length: 534
Alignm identity: 316
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 215, 127

Conread position: 7-561
Cow position:
Alignm length: 568
Alignm identity: 353
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 60, 47

Conread position: 7-567
Cow position:
Alignm length: 567
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 275

Conread position: 7-576
Cow position:
Alignm length: 578
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 68

Conread position: 7-579
Cow position:
Alignm length: 583
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 64

Conread position: 7-587
Cow position:
Alignm length: 593
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 49

Conread position: 7-588
Cow position:
Alignm length: 585
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 533, 0

Conread position: 9-587
Cow position:
Alignm length: 584
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 124

Conread position: 12-388
Cow position:
Alignm length: 384
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 44

Conread position: 12-567
Cow position:
Alignm length: 569
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 45

Conread position: 13-300
Cow position:
Alignm length: 290
Alignm identity: 191
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 66, 76

Conread position: 13-306
Cow position:
Alignm length: 298
Alignm identity: 201
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 64

Conread position: 13-576
Cow position:
Alignm length: 575
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 54

Conread position: 13-587
Cow position:
Alignm length: 584
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 63

Conread position: 14-532
Cow position:
Alignm length: 525
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 43

Conread position: 14-587
Cow position:
Alignm length: 585
Alignm identity: 364
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 52, 61

Conread position: 15-473
Cow position:
Alignm length: 461
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 425, 0

Conread position: 15-537
Cow position:
Alignm length: 532
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 41

Conread position: 18-584
Cow position:
Alignm length: 575
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 47

Conread position: 22-534
Cow position:
Alignm length: 517
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 150

Conread position: 75-534
Cow position:
Alignm length: 467
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 157

Conread position: 75-537
Cow position:
Alignm length: 467
Alignm identity: 287
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 170, 164

Conread position: 91-386
Cow position:
Alignm length: 299
Alignm identity: 192
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 69

Conread position: 93-579
Cow position:
Alignm length: 496
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 149

Conread position: 93-587
Cow position:
Alignm length: 504
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 140

Conread position: 175-550
Cow position:
Alignm length: 384
Alignm identity: 245
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 56, 69

Conread position: 245-537
Cow position:
Alignm length: 302
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 16, 95

Show alignments to all cow chromosomes.