Cow genome map
| Conread name: | Ss1.1-rova003_g18.5 |
| Conread position: | 18-253 |
| Cow position: | chr12:9229423-9229663 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 133-247 |
| Cow position: | chr12:30210426-30210307 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 133-249 |
| Cow position: | chr12:33851304-33851182 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 133-249 |
| Cow position: | chr12:40910346-40910466 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 133-252 |
| Cow position: | chr12:24211356-24211240 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 133-253 |
| Cow position: | chr12:3906417-3906291 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 133-253 |
| Cow position: | chr12:5639090-5638962 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 133-253 |
| Cow position: | chr12:5714573-5714447 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 133-253 |
| Cow position: | chr12:7000660-7000786 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 133-253 |
| Cow position: | chr12:7977983-7977861 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 133-253 |
| Cow position: | chr12:8868932-8869058 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 133-253 |
| Cow position: | chr12:17702283-17702410 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 53, 89 |
| Conread position: | 133-253 |
| Cow position: | chr12:17881804-17881681 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 133-253 |
| Cow position: | chr12:31429625-31429751 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 133-253 |
| Cow position: | chr12:38511893-38512023 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 133-258 |
| Cow position: | chr12:41214378-41214508 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 133-262 |
| Cow position: | chr12:22881999-22881862 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 110 |
| Conread position: | 133-262 |
| Cow position: | chr12:32391791-32391658 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 134-253 |
| Cow position: | chr12:44767018-44766902 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 134-254 |
| Cow position: | chr12:5905998-5905875 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 134-254 |
| Cow position: | chr12:6489046-6489166 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 134-259 |
| Cow position: | chr12:6485268-6485396 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 135-253 |
| Cow position: | chr12:5800978-5800853 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 135-253 |
| Cow position: | chr12:33129206-33129087 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 135-253 |
| Cow position: | chr12:39465520-39465401 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 135-253 |
| Cow position: | chr12:42685004-42685128 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 135-266 |
| Cow position: | chr12:26782825-26782691 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 136-249 |
| Cow position: | chr12:18577779-18577669 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 136-262 |
| Cow position: | chr12:26223047-26223173 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 113 |
| Conread position: | 138-249 |
| Cow position: | chr12:41091469-41091356 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 138-253 |
| Cow position: | chr12:3950407-3950528 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 138-253 |
| Cow position: | chr12:18518607-18518485 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 63 |
| Conread position: | 139-253 |
| Cow position: | chr12:19691294-19691415 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 139-253 |
| Cow position: | chr12:20326713-20326593 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 139-258 |
| Cow position: | chr12:8943282-8943405 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 140-325 |
| Cow position: | chr12:2805110-2805295 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 47, 137 |
| Conread position: | 141-239 |
| Cow position: | chr12:20479392-20479492 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 141-253 |
| Cow position: | chr12:3510500-3510386 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 143-248 |
| Cow position: | chr12:46333285-46333177 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 146-241 |
| Cow position: | chr12:31959819-31959724 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-253 |
| Cow position: | chr12:5635517-5635628 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 147-253 |
| Cow position: | chr12:27803122-27803227 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 147-253 |
| Cow position: | chr12:30805785-30805673 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 147-258 |
| Cow position: | chr12:18388357-18388468 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 148-249 |
| Cow position: | chr12:40110313-40110208 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 148-254 |
| Cow position: | chr12:6410804-6410914 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.