Cow genome map

Conread name: Ss1.1-rova003_g18.5

Conread position: 33-253
Cow position: chr16:17745913-17745692 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 18, 7

Conread position: 33-253
Cow position: chr16:17982066-17982285 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 35, 8

Conread position: 80-253
Cow position: chr16:10650855-10651033 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 74, 10

Conread position: 124-252
Cow position: chr16:7549959-7549826 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 55, 83

Conread position: 128-253
Cow position: chr16:37452627-37452761 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 128-253
Cow position: chr16:53627441-53627570 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 17

Conread position: 131-248
Cow position: chr16:31978202-31978325 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 52, 15

Conread position: 131-252
Cow position: chr16:35623258-35623383 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 50, 20

Conread position: 131-253
Cow position: chr16:43105529-43105656 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 132-253
Cow position: chr16:4145049-4144921 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 133-227
Cow position: chr16:54226615-54226715 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 133-245
Cow position: chr16:25839602-25839484 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 133-247
Cow position: chr16:3634094-3633976 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 133-247
Cow position: chr16:21905145-21905029 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 51, 17

Conread position: 133-248
Cow position: chr16:42340178-42340058 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 18

Conread position: 133-249
Cow position: chr16:11008327-11008206 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 98

Conread position: 133-249
Cow position: chr16:18205942-18205822 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 11

Conread position: 133-250
Cow position: chr16:50289134-50289010 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 105
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 133-252
Cow position: chr16:238250-238124 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 133-252
Cow position: chr16:22868196-22868317 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 44, 16

Conread position: 133-252
Cow position: chr16:35297051-35296931 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 133-252
Cow position: chr16:43276004-43275880 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 13

Conread position: 133-252
Cow position: chr16:54084018-54083893 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 13

Conread position: 133-253
Cow position: chr16:820232-820105 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 133-253
Cow position: chr16:3614729-3614604 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 46, 98

Conread position: 133-253
Cow position: chr16:14758720-14758589 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 133-253
Cow position: chr16:18353974-18354095 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 91, 12

Conread position: 133-253
Cow position: chr16:23681349-23681227 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 38, 79

Conread position: 133-253
Cow position: chr16:24672375-24672500 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 42, 17

Conread position: 133-253
Cow position: chr16:27249386-27249267 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 97, 18

Conread position: 133-253
Cow position: chr16:31348782-31348910 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 133-253
Cow position: chr16:35195627-35195748 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 91, 51

Conread position: 133-253
Cow position: chr16:37117057-37116928 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 133-253
Cow position: chr16:38243679-38243805 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 48, 13

Conread position: 133-253
Cow position: chr16:43308578-43308708 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 133-253
Cow position: chr16:43804475-43804354 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 92, 0

Conread position: 133-253
Cow position: chr16:49169399-49169528 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 133-253
Cow position: chr16:50521459-50521335 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 12

Conread position: 133-258
Cow position: chr16:8323000-8323132 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 46, 13

Conread position: 133-258
Cow position: chr16:48385417-48385548 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 133-261
Cow position: chr16:9790649-9790782 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 17

Conread position: 133-261
Cow position: chr16:45047647-45047779 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 48, 13

Conread position: 133-262
Cow position: chr16:9933143-9933010 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 23, 80

Conread position: 133-264
Cow position: chr16:4192443-4192570 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 58, 13

Conread position: 133-268
Cow position: chr16:4910543-4910689 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 134-242
Cow position: chr16:36203643-36203749 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 134-248
Cow position: chr16:5363881-5363758 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 134-248
Cow position: chr16:41578208-41578088 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 27

Conread position: 134-248
Cow position: chr16:48398273-48398389 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 19, 72

Conread position: 134-249
Cow position: chr16:23810895-23810774 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 134-249
Cow position: chr16:25386958-25386842 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 134-253
Cow position: chr16:3246224-3246349 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 134-253
Cow position: chr16:14242352-14242229 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 17

Conread position: 134-253
Cow position: chr16:18402668-18402542 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 134-253
Cow position: chr16:33704789-33704664 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 134-253
Cow position: chr16:47620364-47620238 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 134-253
Cow position: chr16:47820549-47820431 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 135-249
Cow position: chr16:35168710-35168590 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 135-249
Cow position: chr16:48369969-48370086 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 135-253
Cow position: chr16:13973306-13973424 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 91

Conread position: 135-253
Cow position: chr16:45139651-45139529 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 48, 17

Conread position: 135-258
Cow position: chr16:8279810-8279935 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 135-258
Cow position: chr16:11568138-11568264 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 18, 119

Conread position: 135-258
Cow position: chr16:11806651-11806526 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 45

Conread position: 135-261
Cow position: chr16:54579147-54579022 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 117

Conread position: 135-263
Cow position: chr16:15808956-15808822 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 135-292
Cow position: chr16:4857119-4857276 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 15, 111

Conread position: 136-253
Cow position: chr16:9136159-9136033 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 136-253
Cow position: chr16:13791496-13791374 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 136-253
Cow position: chr16:28192049-28191927 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 24

Conread position: 136-253
Cow position: chr16:33198458-33198577 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 136-253
Cow position: chr16:41752595-41752715 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 136-253
Cow position: chr16:42734037-42734156 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 14

Conread position: 136-254
Cow position: chr16:42345629-42345747 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 47, 15

Conread position: 137-252
Cow position: chr16:10592412-10592293 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 16

Conread position: 137-253
Cow position: chr16:11105532-11105410 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 137-253
Cow position: chr16:15189160-15189042 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 44, 14

Conread position: 138-258
Cow position: chr16:52790030-52789909 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 139-247
Cow position: chr16:39417140-39417254 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 99
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 139-253
Cow position: chr16:24826050-24825929 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 104
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 139-253
Cow position: chr16:39165220-39165101 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 139-253
Cow position: chr16:39616714-39616600 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 85

Conread position: 139-253
Cow position: chr16:53086359-53086472 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 24

Conread position: 139-253
Cow position: chr16:56565575-56565453 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 139-262
Cow position: chr16:16096715-16096587 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 15, 119

Conread position: 140-253
Cow position: chr16:20025423-20025304 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 140-253
Cow position: chr16:38663732-38663851 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 141-253
Cow position: chr16:13306892-13307006 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 101
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 142-253
Cow position: chr16:14754348-14754465 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 143-253
Cow position: chr16:14685416-14685532 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 143-254
Cow position: chr16:8448674-8448788 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 99
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 41, 86

Conread position: 148-253
Cow position: chr16:39514109-39514218 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 149-249
Cow position: chr16:47017281-47017383 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 149-252
Cow position: chr16:33508028-33507925 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 151-258
Cow position: chr16:4699019-4699128 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 151-260
Cow position: chr16:49125563-49125675 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 105

Show alignments to all cow chromosomes.