Cow genome map
| Conread name: | Ss1.1-rova003_g18.5 |
| Conread position: | 120-248 |
| Cow position: | chr17:12946322-12946461 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 127-266 |
| Cow position: | chr17:20083492-20083630 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 97, 24 |
| Conread position: | 129-249 |
| Cow position: | chr17:34207789-34207916 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 132-249 |
| Cow position: | chr17:11215865-11215989 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 133-237 |
| Cow position: | chr17:20857822-20857933 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 133-241 |
| Cow position: | chr17:23798303-23798189 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 133-241 |
| Cow position: | chr17:27765295-27765180 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 133-243 |
| Cow position: | chr17:18860699-18860815 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 133-249 |
| Cow position: | chr17:3782069-3781947 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 133-249 |
| Cow position: | chr17:21293020-21293142 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 133-249 |
| Cow position: | chr17:29472489-29472371 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 133-249 |
| Cow position: | chr17:42347202-42347322 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 133-250 |
| Cow position: | chr17:32950298-32950174 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 133-252 |
| Cow position: | chr17:11215208-11215330 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 133-252 |
| Cow position: | chr17:13922503-13922378 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 133-253 |
| Cow position: | chr17:5246916-5246793 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:10458914-10459039 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 133-253 |
| Cow position: | chr17:12536443-12536570 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:13143666-13143792 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 20, 7 |
| Conread position: | 133-253 |
| Cow position: | chr17:17410315-17410187 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:20993015-20993142 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:21335670-21335796 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:24077429-24077300 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:24587646-24587520 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:25502135-25502008 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:27429601-27429480 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 133-253 |
| Cow position: | chr17:28540052-28539927 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 133-253 |
| Cow position: | chr17:32027431-32027560 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:32349093-32348972 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 133-253 |
| Cow position: | chr17:32989499-32989380 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:32993601-32993720 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 133-253 |
| Cow position: | chr17:39857412-39857291 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 133-253 |
| Cow position: | chr17:41290000-41290122 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 133-256 |
| Cow position: | chr17:38362963-38363091 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 133-258 |
| Cow position: | chr17:7654430-7654561 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 16, 100 |
| Conread position: | 133-258 |
| Cow position: | chr17:9911782-9911656 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 133-273 |
| Cow position: | chr17:14003845-14003695 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 134-246 |
| Cow position: | chr17:265693-265581 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-249 |
| Cow position: | chr17:5423048-5423167 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 113 |
| Conread position: | 134-253 |
| Cow position: | chr17:11056347-11056473 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 134-253 |
| Cow position: | chr17:12591190-12591065 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 134-253 |
| Cow position: | chr17:20990171-20990296 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 134-253 |
| Cow position: | chr17:21243766-21243885 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-253 |
| Cow position: | chr17:38647082-38646958 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 134-254 |
| Cow position: | chr17:25514101-25514225 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 134-258 |
| Cow position: | chr17:23246229-23246105 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 134-258 |
| Cow position: | chr17:32138403-32138523 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 135-249 |
| Cow position: | chr17:18146205-18146085 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 135-253 |
| Cow position: | chr17:11832099-11832221 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 135-253 |
| Cow position: | chr17:26818437-26818551 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 135-253 |
| Cow position: | chr17:32366303-32366186 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 135-253 |
| Cow position: | chr17:39736196-39736079 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 136-253 |
| Cow position: | chr17:12059073-12059196 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 136-253 |
| Cow position: | chr17:21114935-21115052 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 137-249 |
| Cow position: | chr17:5745232-5745348 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 137-252 |
| Cow position: | chr17:28468148-28468035 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 40 |
| Conread position: | 137-253 |
| Cow position: | chr17:9936018-9936139 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 137-253 |
| Cow position: | chr17:12216051-12216175 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 139-249 |
| Cow position: | chr17:30665292-30665172 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 139-253 |
| Cow position: | chr17:7142881-7142762 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 140-258 |
| Cow position: | chr17:4601529-4601653 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 141-244 |
| Cow position: | chr17:24883551-24883659 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 141-252 |
| Cow position: | chr17:20780528-20780410 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 141-253 |
| Cow position: | chr17:31231098-31231213 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 146-249 |
| Cow position: | chr17:17682890-17683001 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 146-252 |
| Cow position: | chr17:1634484-1634590 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 147-249 |
| Cow position: | chr17:9746525-9746417 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 147-259 |
| Cow position: | chr17:4299917-4300030 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 148-253 |
| Cow position: | chr17:22564191-22564079 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 150-252 |
| Cow position: | chr17:8690434-8690543 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 150-253 |
| Cow position: | chr17:9117654-9117545 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 151-249 |
| Cow position: | chr17:11101794-11101898 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.