Cow genome map
| Conread name: | Ss1.1-rova003_g18.5 |
| Conread position: | 78-253 |
| Cow position: | chr18:36445438-36445263 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 108, 32 |
| Conread position: | 124-253 |
| Cow position: | chr18:6609901-6610035 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 129-253 |
| Cow position: | chr18:28101586-28101456 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 130-249 |
| Cow position: | chr18:12023683-12023806 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 130-249 |
| Cow position: | chr18:39875305-39875430 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 131-258 |
| Cow position: | chr18:31672559-31672694 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 132-253 |
| Cow position: | chr18:43555575-43555700 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 133-248 |
| Cow position: | chr18:35582149-35582271 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 133-249 |
| Cow position: | chr18:2592217-2592340 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 133-249 |
| Cow position: | chr18:9066646-9066527 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 133-249 |
| Cow position: | chr18:19849805-19849927 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 133-249 |
| Cow position: | chr18:26286860-26286740 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 133-253 |
| Cow position: | chr18:10861481-10861613 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 133-253 |
| Cow position: | chr18:13507788-13507914 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 133-253 |
| Cow position: | chr18:16847643-16847516 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 133-253 |
| Cow position: | chr18:18369411-18369538 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 133-253 |
| Cow position: | chr18:18815719-18815852 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 133-253 |
| Cow position: | chr18:21195393-21195513 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 133-253 |
| Cow position: | chr18:21205312-21205187 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 133-253 |
| Cow position: | chr18:30586273-30586395 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 133-253 |
| Cow position: | chr18:30794377-30794259 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 133-253 |
| Cow position: | chr18:37382140-37382269 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 133-253 |
| Cow position: | chr18:45104493-45104616 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 22, 98 |
| Conread position: | 133-253 |
| Cow position: | chr18:51392691-51392817 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 133-253 |
| Cow position: | chr18:56159410-56159285 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 133-258 |
| Cow position: | chr18:11867285-11867161 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 133-258 |
| Cow position: | chr18:14815394-14815518 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 91, 12 |
| Conread position: | 133-262 |
| Cow position: | chr18:4368829-4368957 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 50, 114 |
| Conread position: | 133-265 |
| Cow position: | chr18:4182239-4182372 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 99 |
| Conread position: | 134-252 |
| Cow position: | chr18:50382204-50382084 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 134-253 |
| Cow position: | chr18:8299966-8299838 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 134-253 |
| Cow position: | chr18:10576052-10575933 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-253 |
| Cow position: | chr18:11691461-11691583 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 134-253 |
| Cow position: | chr18:16686388-16686512 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 134-253 |
| Cow position: | chr18:19887633-19887750 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 134-253 |
| Cow position: | chr18:33008010-33007885 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 134-253 |
| Cow position: | chr18:33606582-33606453 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 134-273 |
| Cow position: | chr18:36201677-36201822 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 135-246 |
| Cow position: | chr18:3018129-3018244 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 135-248 |
| Cow position: | chr18:42431665-42431777 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 135-253 |
| Cow position: | chr18:25282607-25282728 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 137-253 |
| Cow position: | chr18:219281-219157 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 137-253 |
| Cow position: | chr18:10977266-10977382 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 138-249 |
| Cow position: | chr18:33896483-33896599 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 138-253 |
| Cow position: | chr18:267872-267991 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 139-249 |
| Cow position: | chr18:50082307-50082421 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 140-249 |
| Cow position: | chr18:11618415-11618307 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 140-253 |
| Cow position: | chr18:7487196-7487083 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 140-262 |
| Cow position: | chr18:3209658-3209532 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 81 |
| Conread position: | 141-253 |
| Cow position: | chr18:15340503-15340622 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 142-249 |
| Cow position: | chr18:56183879-56183770 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 142-253 |
| Cow position: | chr18:41271031-41270920 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 142-258 |
| Cow position: | chr18:18868690-18868567 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 143-248 |
| Cow position: | chr18:2042556-2042665 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 146-253 |
| Cow position: | chr18:29356689-29356802 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 147-258 |
| Cow position: | chr18:25984633-25984752 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 148-253 |
| Cow position: | chr18:13360000-13359889 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 75 |
| Conread position: | 148-253 |
| Cow position: | chr18:48453625-48453519 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 148-260 |
| Cow position: | chr18:19193430-19193548 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 151-253 |
| Cow position: | chr18:42747525-42747418 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 153-258 |
| Cow position: | chr18:24636431-24636329 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.