Cow genome map
| Conread name: | Ss1.1-rova003_g18.5 |
| Conread position: | 126-253 |
| Cow position: | chr21:9990565-9990437 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 132-249 |
| Cow position: | chr21:28989656-28989539 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-249 |
| Cow position: | chr21:3236571-3236449 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 133-249 |
| Cow position: | chr21:8985597-8985471 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 133-249 |
| Cow position: | chr21:20925458-20925582 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 133-252 |
| Cow position: | chr21:22718738-22718857 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 133-252 |
| Cow position: | chr21:27863468-27863594 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 133-253 |
| Cow position: | chr21:957718-957593 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 133-253 |
| Cow position: | chr21:3585323-3585442 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 133-253 |
| Cow position: | chr21:3813438-3813562 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 133-253 |
| Cow position: | chr21:10001120-10000995 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 133-253 |
| Cow position: | chr21:12461922-12462049 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 133-253 |
| Cow position: | chr21:15911448-15911320 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 133-253 |
| Cow position: | chr21:18495016-18494890 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 133-253 |
| Cow position: | chr21:24642566-24642439 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 133-253 |
| Cow position: | chr21:26647963-26648086 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 133-253 |
| Cow position: | chr21:28733867-28733991 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 133-253 |
| Cow position: | chr21:33997182-33997305 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 133-253 |
| Cow position: | chr21:34390930-34391054 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 133-253 |
| Cow position: | chr21:38664684-38664559 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 133-253 |
| Cow position: | chr21:43357209-43357340 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 133-254 |
| Cow position: | chr21:20418637-20418765 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 133-254 |
| Cow position: | chr21:44515309-44515183 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 133-256 |
| Cow position: | chr21:45866979-45866849 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 113 |
| Conread position: | 133-258 |
| Cow position: | chr21:13365388-13365252 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 133-258 |
| Cow position: | chr21:27743794-27743659 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 133-259 |
| Cow position: | chr21:14760619-14760489 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 52, 125 |
| Conread position: | 133-262 |
| Cow position: | chr21:47802214-47802345 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 134-249 |
| Cow position: | chr21:643369-643253 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 134-249 |
| Cow position: | chr21:29485026-29484904 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 134-249 |
| Cow position: | chr21:34654122-34654002 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 134-252 |
| Cow position: | chr21:37479999-37479881 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-253 |
| Cow position: | chr21:12801705-12801826 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 134-253 |
| Cow position: | chr21:12960854-12960978 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 134-253 |
| Cow position: | chr21:17856588-17856468 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 86 |
| Conread position: | 134-253 |
| Cow position: | chr21:18041803-18041927 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 134-253 |
| Cow position: | chr21:23586926-23586801 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 134-253 |
| Cow position: | chr21:24598702-24598582 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 134-253 |
| Cow position: | chr21:35569336-35569458 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 134-258 |
| Cow position: | chr21:11360080-11359955 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 134-258 |
| Cow position: | chr21:28626286-28626155 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 134-264 |
| Cow position: | chr21:45262766-45262902 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 135-241 |
| Cow position: | chr21:2810122-2810229 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 135-249 |
| Cow position: | chr21:33263887-33263774 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 135-249 |
| Cow position: | chr21:37361430-37361552 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 135-253 |
| Cow position: | chr21:13488567-13488443 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 135-253 |
| Cow position: | chr21:31090383-31090499 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 135-259 |
| Cow position: | chr21:1059123-1058991 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 135-262 |
| Cow position: | chr21:9416293-9416161 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 123 |
| Conread position: | 136-253 |
| Cow position: | chr21:394062-393946 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 136-253 |
| Cow position: | chr21:30990235-30990349 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 137-249 |
| Cow position: | chr21:16187765-16187883 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 137-253 |
| Cow position: | chr21:4568328-4568206 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 80 |
| Conread position: | 138-253 |
| Cow position: | chr21:30250153-30250269 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 138-254 |
| Cow position: | chr21:7132424-7132539 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 12, 102 |
| Conread position: | 139-248 |
| Cow position: | chr21:41590526-41590634 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 139-252 |
| Cow position: | chr21:42384551-42384431 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 139-253 |
| Cow position: | chr21:395911-395791 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 139-253 |
| Cow position: | chr21:13738603-13738489 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-253 |
| Cow position: | chr21:18790518-18790639 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 139-253 |
| Cow position: | chr21:33563051-33562934 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 139-253 |
| Cow position: | chr21:44825850-44825964 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-262 |
| Cow position: | chr21:32339693-32339823 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 139-298 |
| Cow position: | chr21:33359991-33360153 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 12, 133 |
| Conread position: | 140-253 |
| Cow position: | chr21:29978718-29978835 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 141-253 |
| Cow position: | chr21:2785738-2785855 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 142-249 |
| Cow position: | chr21:26244956-26244845 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 143-253 |
| Cow position: | chr21:18800498-18800608 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 144-253 |
| Cow position: | chr21:911931-912046 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 146-253 |
| Cow position: | chr21:6051540-6051428 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 147-253 |
| Cow position: | chr21:10561552-10561663 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 148-253 |
| Cow position: | chr21:15584387-15584498 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 81 |
| Conread position: | 149-253 |
| Cow position: | chr21:27624739-27624630 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 151-253 |
| Cow position: | chr21:39401623-39401515 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.