Cow genome map
| Conread name: | Ss1.1-rova003_g18.5 |
| Conread position: | 21-240 |
| Cow position: | chr24:16267850-16267624 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 11 |
| Conread position: | 124-239 |
| Cow position: | chr24:38841441-38841557 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 126-262 |
| Cow position: | chr24:3493852-3493719 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 128-253 |
| Cow position: | chr24:27202561-27202430 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 128-258 |
| Cow position: | chr24:17104608-17104744 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 129-253 |
| Cow position: | chr24:44041044-44041180 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 132-255 |
| Cow position: | chr24:18485036-18485166 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 133-249 |
| Cow position: | chr24:6340971-6340850 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 133-249 |
| Cow position: | chr24:31324242-31324118 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 133-249 |
| Cow position: | chr24:42007697-42007576 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 133-252 |
| Cow position: | chr24:16509927-16509804 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 133-252 |
| Cow position: | chr24:27052537-27052661 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 133-253 |
| Cow position: | chr24:35794778-35794903 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 133-253 |
| Cow position: | chr24:43635394-43635271 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 133-262 |
| Cow position: | chr24:43364318-43364186 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 134-253 |
| Cow position: | chr24:6487875-6487756 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-253 |
| Cow position: | chr24:11887116-11886994 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 134-253 |
| Cow position: | chr24:18357096-18357220 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 134-253 |
| Cow position: | chr24:28062908-28062785 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 134-254 |
| Cow position: | chr24:3430690-3430566 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 134-262 |
| Cow position: | chr24:29673478-29673346 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 123 |
| Conread position: | 134-313 |
| Cow position: | chr24:35576575-35576758 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 128 |
| Conread position: | 135-249 |
| Cow position: | chr24:30897581-30897701 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 135-252 |
| Cow position: | chr24:5754795-5754672 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 135-253 |
| Cow position: | chr24:30235825-30235706 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 135-258 |
| Cow position: | chr24:6102782-6102652 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 135-265 |
| Cow position: | chr24:29586948-29586817 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 136-249 |
| Cow position: | chr24:211941-211822 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 136-249 |
| Cow position: | chr24:36404188-36404307 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 136-252 |
| Cow position: | chr24:17860304-17860421 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 136-260 |
| Cow position: | chr24:6450453-6450322 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 137-253 |
| Cow position: | chr24:32204840-32204961 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 138-250 |
| Cow position: | chr24:5152186-5152070 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 139-253 |
| Cow position: | chr24:15373360-15373242 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 139-253 |
| Cow position: | chr24:24457296-24457413 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 139-253 |
| Cow position: | chr24:43432746-43432625 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 139-268 |
| Cow position: | chr24:29679356-29679489 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 141-249 |
| Cow position: | chr24:17938711-17938599 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 141-253 |
| Cow position: | chr24:28553601-28553714 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 142-253 |
| Cow position: | chr24:1269740-1269631 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 142-253 |
| Cow position: | chr24:18390338-18390456 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 142-253 |
| Cow position: | chr24:32070917-32070799 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 142-258 |
| Cow position: | chr24:29539957-29540081 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 143-253 |
| Cow position: | chr24:27719805-27719922 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 147-253 |
| Cow position: | chr24:18970562-18970675 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 149-253 |
| Cow position: | chr24:17492249-17492148 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 152-253 |
| Cow position: | chr24:28327146-28327251 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 153-249 |
| Cow position: | chr24:27941070-27941172 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.